Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008758

Physical Location & Seq

Genomic Coordinates Forward (+)

24909540 .. 24912089

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g23710.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAAGTTATTGAGTTGCCTGGATATACACCTGAAGAAAAACTGAAGATAGCCATGCACCATTTAATTCCCCGAGTTCTTGATCAGCATGGTTTGAATTCTGAATTTCTTAGAATCCCAGAGGCCATGGTGAAACTTGTCATTCAAGGGTACACTAGAGAGGCTGGTGTTCGGAATCTGGAGAGAAACTTGGCTGCCCTGTCTCGCGCAGCTGCAGTAAGAGTTGCAGAGCAAGAACAAGCTGTCTCTCTGAGCAAAGATGTGCAATCGCTTGCTTCACCACTACTCGAAAACAGACTTGCTGATGGAGCTGAAGTGGAAATGGAGGTTATTCCGATGGGTGTGAATAATCATGAGATATCAAGCACTTTCAAGATTGCTTCGCCATTGACTGTGGATGAGGATATGCTGGAGAAAGTATTAGGGCCTCCAAAGTTTGATGACAAAGAAGCTGCAGAACGAGTTGCAACACCTGGTGTGTCTGTTGGGCTTGTTTGGACTGCTTTTGGTGGAGAGGTCCAATTTGTGGAGGCTACAGCAATGGGGGGAAAGGGTGAATTACATCTCACTGGTCAACTTGGAGATGTTATCAAAGAATCAGCACAAATAGCATTGACATGGGTGAGAGCCAGGGCAAGGGATCTTAACTTGTCAACAGCTGCGGCAGCAAATCTTTTGGAAGGTCGTGATGTTCACATACACTTTCCTGCTGGGGCTGTACCCAAGGATGGACCCTCAGCGGGTGTTACTCTGGTAACTGCACTGGTTTCCTTGTTCAGTCAGAGAAGAGTAAGAGCAGATACAGCAATGACGGGAGAAATGACATTGAGGGGTCTTGTACTACCTGTTGGTGGTGTCAAGGATAAGGTATTGGCAGCCCACCGTTGTGGTATTAAAAGAGTCATTCTTCCGGAGAGGAATCTGAAGGACTTAACTGAAGTACCATCAGCGGTTCTTTCCGGTCTTGAGATAATACTGGCAAAGCGAATGGAAGATGTGTTAGAGCAGGCTTTTGAAGGCGGATGCCCCTGGAGACAGCACTCAAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006139 GO:0006259 GO:0006508 GO:0006605 GO:0006625 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015919 GO:0016043 GO:0016485 GO:0016558 GO:0016560 GO:0017038 GO:0019538 GO:0022622 GO:0031907 GO:0031974 GO:0032042 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0040007 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043574 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0090304 GO:0090696 GO:0099402 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

351

Amino Acids

37.84

Weight (kDa)

5.79

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47040
fragaria_vesca	FvH4_5g20910 FvH4_5g20910
malus_domestica	MD06G1043200.v1.1 MD16G1267600.v1.1
prunus_persica	Prupe.5G050100_v2.0.a1 Prupe.5G050100_v2.0.a1
pyrus_communis	pycom06g03620 pycom16g23700 pycom16g23710
rosa_chinensis	RchiOBHm_Chr7g0207901
rosa_laevigata	RLG00000003277
rosa_multiflora	Rmu_co8377115.1_g000001 Rmu_sc0006577.1_g000003
rosa_roxburghii	Rroxscaffold_3G00251060
rosa_rugosa	Rorug07G0100200 Rorug07G0100200
rosa_samantha	Rh7AG233500 Rh7BG229100 Rh7CG248800 Rh7DG239500
rosa_wichuraiana	Rw0G001300 Rw7G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	526
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	910
AciI	CCGC	4 cut(s)	662, 740, 950, 1020
AclWI	GGATC	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	97, 104
AcuI	CTGAAG	5 cut(s)	54, 65, 333, 944, 957
AdeI	CACNNNGTG	1 cut(s)	476
AfaI	GTAC	4 cut(s)	152, 720, 840, 942
AfiI	CCNNNNNNNGG	5 cut(s)	526, 636, 728, 740, 851
AgsI	TTSAA	4 cut(s)	97, 146, 373, 1016
AjnI	CCWGG	4 cut(s)	19, 472, 629, 1028
AleI	CACNNNNGTG	1 cut(s)	885
AluBI	AGCT	5 cut(s)	212, 242, 311, 452, 659
AluI	AGCT	5 cut(s)	212, 242, 311, 452, 659
Alw26I	GTCTC	3 cut(s)	207, 250, 1027
AlwI	GGATC	1 cut(s)	648
Ama87I	CYCGRG	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	910
AoxI	GGCC	2 cut(s)	123, 425
ApeKI	GCWGC	7 cut(s)	194, 209, 212, 452, 659, 665, 875
ApoI	RAATTY	2 cut(s)	97, 104
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	3 cut(s)	425, 517, 731
AsuHPI	GGTGA	4 cut(s)	142, 270, 566, 634
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	517, 731
BaeI	ACNNNNGTAYC	2 cut(s)	924, 957
BbvCI	CCTCAGC	1 cut(s)	736
BbvI	GCAGC	7 cut(s)	181, 199, 221, 439, 646, 677, 887
BccI	CCATC	4 cut(s)	299, 331, 722, 952
BciT130I	CCWGG	4 cut(s)	21, 474, 631, 1030
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	3 cut(s)	207, 250, 1027
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	3 cut(s)	213, 453, 534
BisI	GCNGC	8 cut(s)	195, 210, 213, 453, 660, 663, 666, 876
BlsI	GCNGC	8 cut(s)	196, 211, 214, 454, 661, 664, 667, 877
Bme1390I	CCNGG	4 cut(s)	21, 474, 631, 1030
Bme18I	GGWCC	2 cut(s)	517, 731
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	3 cut(s)	425, 517, 731
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	4 cut(s)	21, 474, 631, 1030
BmsI	GCATC	1 cut(s)	1013
BpmI	CTGGAG	3 cut(s)	200, 431, 1051
Bpu10I	CCTNAGC	1 cut(s)	736
BpuEI	CTTGAG	1 cut(s)	986
BsaJI	CCNNGG	4 cut(s)	126, 630, 723, 1028
BsaWI	WCCGGW	2 cut(s)	910, 959
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	5 cut(s)	526, 636, 728, 740, 851
Bse1I	ACTGG	3 cut(s)	574, 768, 981
Bse3DI	GCAATG	2 cut(s)	546, 813
BseAI	TCCGGA	1 cut(s)	910
BseBI	CCWGG	4 cut(s)	21, 474, 631, 1030
BseDI	CCNNGG	4 cut(s)	126, 630, 723, 1028
BseGI	GGATG	3 cut(s)	403, 733, 1028
BseLI	CCNNNNNNNGG	5 cut(s)	526, 636, 728, 740, 851
BseMI	GCAATG	2 cut(s)	546, 813
BseMII	CTCAG	2 cut(s)	242, 750
BseNI	ACTGG	3 cut(s)	574, 768, 981
BseXI	GCAGC	7 cut(s)	181, 199, 221, 439, 646, 677, 887
BseYI	CCCAGC	1 cut(s)	710
BsgI	GTGCAG	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	125, 427
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	911, 960
BslI	CCNNNNNNNGG	5 cut(s)	526, 636, 728, 740, 851
BsmAI	GTCTC	3 cut(s)	207, 250, 1027
BsnI	GGCC	2 cut(s)	125, 427
BsoBI	CYCGRG	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	910
Bsp143I	GATC	2 cut(s)	82, 640
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	4 cut(s)	662, 740, 950, 1020
BspANI	GGCC	2 cut(s)	125, 427
BspCNI	CTCAG	2 cut(s)	243, 749
BspEI	TCCGGA	1 cut(s)	910
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	733
BspMAI	CTGCAG	2 cut(s)	217, 457
BspPI	GGATC	1 cut(s)	648
BsrDI	GCAATG	2 cut(s)	546, 813
BsrI	ACTGG	3 cut(s)	574, 768, 981
BssECI	CCNNGG	4 cut(s)	126, 630, 723, 1028
BssMI	GATC	2 cut(s)	82, 640
BssT1I	CCWWGG	2 cut(s)	126, 723
Bst2UI	CCWGG	4 cut(s)	21, 474, 631, 1030
Bst4CI	ACNGT	2 cut(s)	394, 884
Bst6I	CTCTTC	1 cut(s)	781
BstC8I	GCNNGC	2 cut(s)	273, 1008
BstDEI	CTNAG	3 cut(s)	110, 251, 736
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	403, 733, 1028
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	2 cut(s)	85, 643
BstMAI	GTCTC	3 cut(s)	207, 250, 1027
BstMBI	GATC	2 cut(s)	82, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 608, 665, 803
BstNI	CCWGG	4 cut(s)	21, 474, 631, 1030
BstSCI	CCNGG	4 cut(s)	19, 472, 629, 1028
BstSFI	CTRYAG	3 cut(s)	213, 453, 534
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	7 cut(s)	181, 199, 221, 439, 646, 677, 887
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	887
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	125, 427
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	403, 733, 1028
BtsIMutI	CAGTG	2 cut(s)	567, 761
Cac8I	GCNNGC	2 cut(s)	273, 1008
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	425, 517, 731
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	4 cut(s)	151, 719, 839, 941
CviAII	CATG	5 cut(s)	55, 89, 127, 353, 618
CviQI	GTAC	4 cut(s)	151, 719, 839, 941
DdeI	CTNAG	3 cut(s)	110, 251, 736
DpnI	GATC	2 cut(s)	84, 642
DpnII	GATC	2 cut(s)	82, 640
DraIII	CACNNNGTG	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
EciI	GGCGGA	1 cut(s)	1035
Eco130I	CCWWGG	2 cut(s)	126, 723
Eco32I	GATATC	1 cut(s)	360
Eco47I	GGWCC	2 cut(s)	517, 731
Eco57I	CTGAAG	5 cut(s)	54, 65, 333, 944, 957
Eco88I	CYCGRG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	4 cut(s)	19, 472, 629, 1028
EcoRV	GATATC	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	126, 723
ErhI	CCWWGG	2 cut(s)	126, 723
FaeI	CATG	5 cut(s)	58, 92, 130, 356, 621
FaiI	YATR	9 cut(s)	27, 56, 90, 128, 354, 407, 619, 698, 1051
FatI	CATG	5 cut(s)	54, 88, 126, 352, 617
FauI	CCCGC	1 cut(s)	733
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	8 cut(s)	195, 210, 213, 453, 660, 663, 666, 876
FokI	GGATG	3 cut(s)	410, 740, 1035
Fsp4HI	GCNGC	8 cut(s)	195, 210, 213, 453, 660, 663, 666, 876
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	8 cut(s)	195, 210, 213, 453, 660, 663, 666, 876
GsaI	CCCAGC	1 cut(s)	714
GsuI	CTGGAG	3 cut(s)	200, 431, 1051
HaeIII	GGCC	2 cut(s)	125, 427
HapII	CCGG	2 cut(s)	911, 960
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	5 cut(s)	58, 92, 130, 356, 621
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	2 cut(s)	575, 654
HindII	GTYRAC	2 cut(s)	575, 654
HinfI	GANTC	5 cut(s)	114, 175, 596, 900, 919
HpaII	CCGG	2 cut(s)	911, 960
HphI	GGTGA	4 cut(s)	142, 270, 566, 634
Hpy166II	GTNNAC	4 cut(s)	153, 575, 654, 694
Hpy188I	TCNGA	6 cut(s)	103, 174, 252, 336, 783, 924
Hpy188III	TCNNGA	7 cut(s)	80, 179, 353, 373, 686, 911, 965
Hpy8I	GTNNAC	4 cut(s)	153, 575, 654, 694
HpyAV	CCTTC	3 cut(s)	674, 919, 1010
HpyCH4III	ACNGT	2 cut(s)	394, 884
HpyCH4V	TGCA	7 cut(s)	58, 215, 227, 265, 455, 467, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 608, 665, 803
HpyF3I	CTNAG	3 cut(s)	110, 251, 736
Hsp92II	CATG	5 cut(s)	58, 92, 130, 356, 621
HspAI	GCGC	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	910
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 640
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	7 cut(s)	181, 199, 221, 439, 646, 677, 887
LweI	GCATC	1 cut(s)	1013
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	745, 754
MalI	GATC	2 cut(s)	84, 642
MboI	GATC	2 cut(s)	82, 640
MboII	GAAGA	5 cut(s)	47, 58, 798, 899, 1004
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	5 cut(s)	66, 97, 104, 521, 557
MlyI	GAGTC	1 cut(s)	909
MroI	TCCGGA	1 cut(s)	910
MseI	TTAA	4 cut(s)	65, 645, 894, 932
MslI	CAYNNNNRTG	2 cut(s)	616, 885
MspA1I	CMGCKG	4 cut(s)	212, 659, 740, 950
MspI	CCGG	2 cut(s)	911, 960
MspR9I	CCNGG	4 cut(s)	21, 474, 631, 1030
MvaI	CCWGG	4 cut(s)	21, 474, 631, 1030
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	308, 608, 665, 803
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	82, 640
NlaIII	CATG	5 cut(s)	58, 92, 130, 356, 621
NlaIV	GGNNCC	1 cut(s)	733
OliI	CACNNNNGTG	1 cut(s)	885
PagI	TCATGA	1 cut(s)	352
PfeI	GAWTC	4 cut(s)	114, 175, 596, 919
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	8 cut(s)	196, 211, 214, 454, 661, 664, 667, 877
PleI	GAGTC	1 cut(s)	908
PpsI	GAGTC	1 cut(s)	908
Psp6I	CCWGG	4 cut(s)	19, 472, 629, 1028
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	4 cut(s)	19, 472, 629, 1028
PspN4I	GGNNCC	1 cut(s)	733
PspPI	GGNCC	3 cut(s)	425, 517, 731
PstI	CTGCAG	2 cut(s)	217, 457
PsuI	RGATCY	1 cut(s)	640
PvuII	CAGCTG	2 cut(s)	212, 659
RsaI	GTAC	4 cut(s)	152, 720, 840, 942
RsaNI	GTAC	4 cut(s)	151, 719, 839, 941
RseI	CAYNNNNRTG	2 cut(s)	616, 885
SaqAI	TTAA	4 cut(s)	65, 645, 894, 932
SatI	GCNGC	8 cut(s)	195, 210, 213, 453, 660, 663, 666, 876
Sau3AI	GATC	2 cut(s)	82, 640
Sau96I	GGNCC	3 cut(s)	425, 517, 731
SchI	GAGTC	1 cut(s)	909
ScrFI	CCNGG	4 cut(s)	21, 474, 631, 1030
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	1 cut(s)	1013
SfcI	CTRYAG	3 cut(s)	213, 453, 534
SinI	GGWCC	2 cut(s)	517, 731
SmiMI	CAYNNNNRTG	2 cut(s)	616, 885
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
Sse9I	AATT	5 cut(s)	66, 97, 104, 521, 557
SsiI	CCGC	4 cut(s)	662, 740, 950, 1020
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	4 cut(s)	19, 472, 629, 1028
StyI	CCWWGG	2 cut(s)	126, 723
TaaI	ACNGT	2 cut(s)	394, 884
TaqI	TCGA	1 cut(s)	288
TasI	AATT	5 cut(s)	66, 97, 104, 521, 557
TatI	WGTACW	1 cut(s)	838
TauI	GCSGC	1 cut(s)	665
TfiI	GAWTC	4 cut(s)	114, 175, 596, 919
Tru1I	TTAA	4 cut(s)	65, 645, 894, 932
Tru9I	TTAA	4 cut(s)	65, 645, 894, 932
TscAI	CASTG	2 cut(s)	574, 768
TseI	GCWGC	7 cut(s)	194, 209, 212, 452, 659, 665, 875
TspRI	CASTG	2 cut(s)	574, 768
Van91I	CCANNNNNTGG	1 cut(s)	526
VpaK11BI	GGWCC	2 cut(s)	517, 731
XapI	RAATTY	2 cut(s)	97, 104
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.