Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008758

Physical Location & Seq

Genomic Coordinates Forward (+)

23438607 .. 23447909

Gene Structure 9303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG248800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGGCGGAATCGGTCGAGCTTCCCAGTCGCCTCGGAATCCTCCCCTTCAAGAACAAGGTTCTCTTGCCGGGAGCTATCATCCGAATTCGATGCACTTCACCCAGCAGTGTGAAGCTGGTGGAGCAGGAGTTATGGCAGAGGGAAGAGAAGGGATTGATCGGCATTCTTCCCGTTCGAGACGCTGCTGAGGCAGCAACCGTGGGTCCTATGTTGTCTCAAGGCGTCGGAAGTGATTCTGGTGAGCGGAGCTCAAAAGTTCAAGTTGGCACATCTGATTCTCAAAAAGTGGATGGCAAGAATCAGCAGGATATTCATTGGCATACCAGGGGAGTTGCTGCGCGTGCTCTGCATCTCTCAAGAGGAGTTGAGAAGCCAAGTGGGAGGGTTACATATGTAGTTGTCCTTGAAGGTTTATGTAGATTCAGCGTCCAGGAACTTAGCACAAGAGGAACATATTATACTGCACGGATATCTCCTCTTGAAATGACAAAGTCTGAAATGGAGCATGTGGAGCAAGACCCTGAATTCATCACATTGTCTCGGCAGTTCAAAGCAACTGCTACTGAGCTTATTTCTGTTCTTGAGCAGAAGCAAAAAACTGGGGGAAGAACAAAAGTTCTTTTAGAGACTGTCCCGGTTCATAAGTTGGCAGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAGGAGCAACTGTCTATGTTAGATTCAGTTGATCTAAAAGTAAGACTTTCAAAAGCTACTGAGTTAGTCGACAGGCATTTGCAGTCTATACATGTAGCAGAGAAGATTACACAGAAAGTTGAGGGTCAATTATCAAAATCACAAAAAGAATTCCTTTTACGCCAGCAGATGAGAGCTATAAAGGAAGAGCTCGGTGACAATGATGATGATGAAGATGATGTAGCCGCCCTAGAAAGAAAGATGCAAAGTGCAGGAATGCCTTCAAATATCTGGAAGCATGCACAGAGGGAGTTAAGGAGGCTTAAAAAGATGCAACCCCAGCAACCTGGATATAATAGTTCACGTGTTTACCTGGAGCTACTTGCTGATCTTCCCTGGGAGAAGGCTACTGAAGAATTTGAGTTAGATTTAAGGGTTGCAAAAGAACGTCTTGACAGTGATCACTATGGTTTAGTCAAGGTCAAGCAGCGGATTATTGAATATTTGGCCGTTCGTAAGCTCAAACCAGATGCCAGAGGCCCTGTGTTGTGCTTCGTTGGCCCACCAGGTGTTGGGAAAACATCTTTGGCATCATCTATTGCTGCTGCCCTGGGCAGAAAGTTTATACGCATATCCCTTGGTGGTGTCAAGGATGAGGCTGATATTCGAGGGCATAGGAGGACATACATTGGAAGCATGCCAGGGAGACTCATTGATGGATTGAAGAGAGTATCTGTTTGCAACCCTGTCATGCTGCTAGATGAAATTGACAAGACCGGTTCTGATGTGCGTGGTGATCCAGCTTCGGCTCTATTGGAGGTTCTTGACCCTGAGCAAAACAAAACTTTCAATGATCACTATTTGAATGTTCCATTTGACCTTTCAAAGGTGATTTTTGTGGCAACTGCAAATAGGATGCAGCCTATTCCACCTCCACTCTTGGACAGGATGGAAGTTATTGAGTTGCCTGGGTATACACCTGAAGAAAAGCTGAAGATAGCTATGCACCATTTAATTCCGCGAGTTCTTGATCAACACGGGTTAAGCACCGAGTTTCTTCAAATCCCAGAGGCGATGGTGAAACTTGTCATTCAGGGGTACACCAGAGAGGCTGGTGTTCGGAATCTGGAGAGGAATTTGGCTGCTTTGGCTCGTGCTGCAGCTGTGAGAGTTGCGGAGCATGAACAAGCTGTCTCAGTGAGCAAAGATGTGCACTCGCTTGCTTCACCGATAGTGGAAAGCAGACTAGCTGATGGAGGTGAAGTGGAAATGGAGGTTATTCCAATGGGTGCAACTAATCATGAGATATCAAGCACTTTCAAGATTTCTTCGCCACTGATTGTGGATGAGGATATGCTGGAAAAAGTATTAGGGCCTCCAAGGTTTGATGACAAGGAAGCTGCAGAACGGGTTGCAACACCTGGTGTATCTGTTGGGCTTGTTTGGACTTCTGTTGGTGGGGAGGTTCAGTTTGTGGAGGCTACAGCAATGGCGGGAAAGGGTGAATTACATCTCACTGGTCAGCTTGGAGATGTTATAAAAGAATCAGCACAGATAGCACTGACATGGGTAAGAGCTAGGGCAACAGATCTTATGTTGGCAGCATCGGATGAAACAAATCTTCTGGAGGGTCGGGATGTTCATATACATTTTCCCGCTGGCGCTGTACCTAAGGATGGGCCCTCCGCTGGTGTGACACTGGTAACTGCACTTGTTTCACTGTTCAGTCAGAAAAGAGTAAGGGCAGATACAGCAATGACTGGAGAAATGACATTGAGGGGTCTCGTACTACCGGTTGGTGGTATCAAGGATAAGGTATACTTACTCACCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006139 GO:0006259 GO:0006508 GO:0006605 GO:0006625 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015919 GO:0016043 GO:0016485 GO:0016558 GO:0016560 GO:0017038 GO:0019538 GO:0022622 GO:0031907 GO:0031974 GO:0032042 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0040007 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043574 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0090304 GO:0090696 GO:0099402 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

832

Amino Acids

91.58

Weight (kDa)

6.19

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	11 - 253	3.6e-29	ATP-dependent protease La (LON) substrate-binding domain
AAA	PF00004	404 - 541	1.2e-25	ATPase family associated with various cellular activities (AAA)
AAA_5	PF07728	404 - 538	1.3e-07	AAA domain (dynein-related subfamily)
Lon_lid	PF22667	566 - 617	2.5e-17	Lon protease AAA+ ATPase lid domain
Lon_C	PF05362	669 - 827	1.3e-58	Lon protease (S16) C-terminal proteolytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47040
fragaria_vesca	FvH4_5g20910 FvH4_5g20910
malus_domestica	MD06G1043200.v1.1 MD16G1267600.v1.1
prunus_persica	Prupe.5G050100_v2.0.a1 Prupe.5G050100_v2.0.a1
pyrus_communis	pycom06g03620 pycom16g23700 pycom16g23710
rosa_chinensis	RchiOBHm_Chr7g0207901
rosa_laevigata	RLG00000003277
rosa_multiflora	Rmu_co8377115.1_g000001 Rmu_sc0006577.1_g000003
rosa_roxburghii	Rroxscaffold_3G00251060
rosa_rugosa	Rorug07G0100200 Rorug07G0100200
rosa_samantha	Rh7AG233500 Rh7BG229100 Rh7CG248800 Rh7DG239500
rosa_wichuraiana	Rw0G001300 Rw7G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2201
AccB7I	CCANNNNNTGG	1 cut(s)	1235
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	3 cut(s)	753, 1637, 2481
AccII	CGCG	2 cut(s)	340, 1684
AciI	CCGC	9 cut(s)	5, 244, 909, 1153, 1682, 1838, 2156, 2319, 2349
AclWI	GGATC	1 cut(s)	1454
AcoI	YGGCCR	1 cut(s)	1170
AcsI	RAATTY	5 cut(s)	84, 524, 833, 1079, 1798
AcuI	CTGAAG	3 cut(s)	1095, 1665, 1676
AcvI	CACGTG	1 cut(s)	1028
AcyI	GRCGYC	1 cut(s)	222
AdeI	CACNNNGTG	2 cut(s)	1232, 2087
AfaI	GTAC	3 cut(s)	1763, 2331, 2451
AfiI	CCNNNNNNNGG	5 cut(s)	1235, 1549, 2339, 2351, 2462
AflIII	ACRYGT	2 cut(s)	775, 1027
AgeI	ACCGGT	2 cut(s)	1439, 2455
AjuI	GAANNNNNNNTTGG	2 cut(s)	1232, 1264
Alw21I	GWGCWC	4 cut(s)	251, 346, 876, 1878
Alw26I	GTCTC	7 cut(s)	171, 219, 543, 620, 1363, 1861, 2450
Alw44I	GTGCAC	1 cut(s)	1874
AlwI	GGATC	1 cut(s)	1454
AoxI	GGCC	5 cut(s)	1170, 1201, 1222, 2036, 2342
ApaI	GGGCCC	1 cut(s)	2346
ApaLI	GTGCAC	1 cut(s)	1874
ApoI	RAATTY	5 cut(s)	84, 524, 833, 1079, 1798
AsiGI	ACCGGT	2 cut(s)	1439, 2455
Asp700I	GAANNNNTTC	2 cut(s)	232, 943
AspLEI	GCGC	2 cut(s)	340, 2327
AspS9I	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
AsuC2I	CCSGG	2 cut(s)	69, 635
AsuNHI	GCTAGC	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	2334
BaeGI	GKGCMC	2 cut(s)	1878, 2346
BanII	GRGCYC	3 cut(s)	251, 876, 2346
BauI	CACGAG	1 cut(s)	1815
BbrPI	CACGTG	1 cut(s)	1028
Bbv12I	GWGCWC	4 cut(s)	251, 346, 876, 1878
BbvCI	CCTCAGC	1 cut(s)	186
BccI	CCATC	6 cut(s)	284, 1373, 1606, 1732, 1910, 2333
BceAI	ACGGC	1 cut(s)	1157
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BclI	TGATCA	3 cut(s)	1123, 1516, 1693
BcnI	CCSGG	2 cut(s)	69, 635
BcoDI	GTCTC	7 cut(s)	171, 219, 543, 620, 1363, 1861, 2450
BfaI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241
BfmI	CTRYAG	3 cut(s)	1821, 2064, 2145
BfoI	RGCGCY	1 cut(s)	2328
BglII	AGATCT	1 cut(s)	2251
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
BmiI	GGNNCC	2 cut(s)	204, 2344
BmrI	ACTGGG	2 cut(s)	18, 609
BmsI	GCATC	8 cut(s)	80, 358, 915, 984, 1183, 1262, 1569, 2276
BmtI	GCTAGC	1 cut(s)	669
BmuI	ACTGGG	2 cut(s)	18, 609
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	4 cut(s)	1058, 1811, 2309, 2445
Bpu10I	CCTNAGC	2 cut(s)	186, 1494
BpuEI	CTTGAG	3 cut(s)	201, 340, 602
BpuMI	CCSGG	2 cut(s)	69, 635
BsaAI	YACGTR	1 cut(s)	1028
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	2450
BsaWI	WCCGGW	2 cut(s)	1439, 2455
BsaXI	ACNNNNNCTCC	8 cut(s)	113, 143, 680, 710, 1911, 1941, 2117, 2147
Bsc4I	CCNNNNNNNGG	5 cut(s)	1235, 1549, 2339, 2351, 2462
Bse118I	RCCGGY	2 cut(s)	1439, 2455
Bse1I	ACTGG	5 cut(s)	24, 604, 2185, 2367, 2428
Bse21I	CCTNAGG	1 cut(s)	2334
Bse3DI	GCAATG	2 cut(s)	2157, 2424
BseGI	GGATG	9 cut(s)	78, 295, 1321, 1584, 1617, 2014, 2278, 2305, 2344
BseLI	CCNNNNNNNGG	5 cut(s)	1235, 1549, 2339, 2351, 2462
BseMI	GCAATG	2 cut(s)	2157, 2424
BseMII	CTCAG	5 cut(s)	177, 555, 735, 1485, 1872
BseNI	ACTGG	5 cut(s)	24, 604, 2185, 2367, 2428
BseRI	GAGGAG	3 cut(s)	375, 465, 701
BseSI	GKGCMC	2 cut(s)	1878, 2346
BseYI	CCCAGC	2 cut(s)	101, 1002
BsgI	GTGCAG	3 cut(s)	447, 954, 2355
Bsh1236I	CGCG	2 cut(s)	340, 1684
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	5 cut(s)	1172, 1203, 1224, 2038, 2344
BshTI	ACCGGT	2 cut(s)	1439, 2455
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	4 cut(s)	251, 346, 876, 1878
BsiSI	CCGG	4 cut(s)	68, 635, 1440, 2456
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	5 cut(s)	1235, 1549, 2339, 2351, 2462
BsmAI	GTCTC	7 cut(s)	171, 219, 543, 620, 1363, 1861, 2450
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	2 cut(s)	162, 945
BsnI	GGCC	5 cut(s)	1172, 1203, 1224, 2038, 2344
Bso31I	GGTCTC	1 cut(s)	2450
Bsp120I	GGGCCC	1 cut(s)	2342
Bsp1286I	GDGCHC	5 cut(s)	251, 346, 876, 1878, 2346
Bsp143I	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
BspACI	CCGC	9 cut(s)	5, 244, 909, 1153, 1682, 1838, 2156, 2319, 2349
BspANI	GGCC	5 cut(s)	1172, 1203, 1224, 2038, 2344
BspCNI	CTCAG	5 cut(s)	178, 556, 736, 1486, 1871
BspFNI	CGCG	2 cut(s)	340, 1684
BspHI	TCATGA	1 cut(s)	1963
BspLI	GGNNCC	2 cut(s)	204, 2344
BspMAI	CTGCAG	2 cut(s)	1825, 2068
BspOI	GCTAGC	1 cut(s)	669
BspPI	GGATC	1 cut(s)	1454
BspQI	GCTCTTC	1 cut(s)	864
BspTNI	GGTCTC	1 cut(s)	2450
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	2 cut(s)	2157, 2424
BsrFI	RCCGGY	2 cut(s)	1439, 2455
BsrI	ACTGG	5 cut(s)	24, 604, 2185, 2367, 2428
BssAI	RCCGGY	2 cut(s)	1439, 2455
BssMI	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
BssNAI	GTATAC	2 cut(s)	1638, 2482
BssNI	GRCGYC	1 cut(s)	222
BssSI	CACGAG	1 cut(s)	1815
BssT1I	CCWWGG	2 cut(s)	1300, 2042
Bst1107I	GTATAC	2 cut(s)	1638, 2482
Bst2BI	CACGAG	1 cut(s)	1815
Bst4CI	ACNGT	5 cut(s)	199, 631, 696, 1121, 2385
Bst6I	CTCTTC	3 cut(s)	138, 864, 1382
BstACI	GRCGYC	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	1028
BstC8I	GCNNGC	7 cut(s)	342, 667, 848, 963, 1361, 1884, 2323
BstDEI	CTNAG	7 cut(s)	186, 437, 564, 744, 1494, 1858, 2334
BstDSI	CCRYGG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	1547
BstF5I	GGATG	9 cut(s)	78, 295, 1321, 1584, 1617, 2014, 2278, 2305, 2344
BstFNI	CGCG	2 cut(s)	340, 1684
BstH2I	RGCGCY	1 cut(s)	2328
BstHHI	GCGC	2 cut(s)	340, 2327
BstKTI	GATC	8 cut(s)	159, 718, 1054, 1126, 1462, 1519, 1696, 2254
BstMAI	GTCTC	7 cut(s)	171, 219, 543, 620, 1363, 1861, 2450
BstMBI	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
BstMCI	CGRYCG	1 cut(s)	15
BstNSI	RCATGY	4 cut(s)	509, 779, 965, 1363
BstSFI	CTRYAG	3 cut(s)	1821, 2064, 2145
BstSLI	GKGCMC	2 cut(s)	1878, 2346
BstUI	CGCG	2 cut(s)	340, 1684
BstX2I	RGATCY	1 cut(s)	2251
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	2251
BstZ17I	GTATAC	2 cut(s)	1638, 2482
Bsu36I	CCTNAGG	1 cut(s)	2334
BsuRI	GGCC	5 cut(s)	1172, 1203, 1224, 2038, 2344
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	1751
BtsCI	GGATG	9 cut(s)	78, 295, 1321, 1584, 1617, 2014, 2278, 2305, 2344
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	8 cut(s)	112, 1126, 1866, 1997, 2178, 2222, 2360, 2381
Cac8I	GCNNGC	7 cut(s)	342, 667, 848, 963, 1361, 1884, 2323
CciI	TCATGA	1 cut(s)	1963
CfoI	GCGC	2 cut(s)	340, 2327
Cfr10I	RCCGGY	2 cut(s)	1439, 2455
Cfr13I	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
CseI	GACGC	3 cut(s)	188, 211, 415
CsiI	ACCWGGT	2 cut(s)	1228, 2083
Csp6I	GTAC	3 cut(s)	1762, 2330, 2450
CspAI	ACCGGT	2 cut(s)	1439, 2455
CviAII	CATG	9 cut(s)	506, 776, 962, 1360, 1414, 1844, 1964, 2229, 2496
CviQI	GTAC	3 cut(s)	1762, 2330, 2450
DdeI	CTNAG	7 cut(s)	186, 437, 564, 744, 1494, 1858, 2334
DpnI	GATC	8 cut(s)	158, 717, 1053, 1125, 1461, 1518, 1695, 2253
DpnII	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
DraIII	CACNNNGTG	2 cut(s)	1232, 2087
EaeI	YGGCCR	1 cut(s)	1170
Eam1104I	CTCTTC	3 cut(s)	138, 864, 1382
EarI	CTCTTC	3 cut(s)	138, 864, 1382
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	249, 874
Eco130I	CCWWGG	2 cut(s)	1300, 2042
Eco24I	GRGCYC	3 cut(s)	251, 876, 2346
Eco31I	GGTCTC	1 cut(s)	2450
Eco32I	GATATC	2 cut(s)	471, 1971
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	2 cut(s)	249, 874
Eco57I	CTGAAG	3 cut(s)	1095, 1665, 1676
Eco72I	CACGTG	1 cut(s)	1028
Eco81I	CCTNAGG	1 cut(s)	2334
EcoICRI	GAGCTC	2 cut(s)	249, 874
EcoNI	CCTNNNNNAGG	1 cut(s)	1547
EcoO109I	RGGNCCY	4 cut(s)	203, 1202, 2036, 2343
EcoRI	GAATTC	3 cut(s)	84, 524, 833
EcoRV	GATATC	2 cut(s)	471, 1971
EcoT14I	CCWWGG	2 cut(s)	1300, 2042
EcoT38I	GRGCYC	3 cut(s)	251, 876, 2346
ErhI	CCWWGG	2 cut(s)	1300, 2042
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	9 cut(s)	509, 779, 965, 1363, 1417, 1847, 1967, 2232, 2499
FalI	AAGNNNNNCTT	9 cut(s)	47, 79, 714, 746, 822, 854, 1098, 1130, 2468
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	9 cut(s)	505, 775, 961, 1359, 1413, 1843, 1963, 2228, 2495
FauI	CCCGC	2 cut(s)	2149, 2326
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	3 cut(s)	1123, 1516, 1693
FblI	GTMKAC	3 cut(s)	753, 1637, 2481
FokI	GGATG	9 cut(s)	65, 302, 1328, 1591, 1624, 2021, 2285, 2312, 2351
FriOI	GRGCYC	3 cut(s)	251, 876, 2346
FspBI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241
GlaI	GCGC	2 cut(s)	339, 2326
GsaI	CCCAGC	2 cut(s)	105, 1006
GsuI	CTGGAG	4 cut(s)	1058, 1811, 2309, 2445
HaeII	RGCGCY	1 cut(s)	2328
HaeIII	GGCC	5 cut(s)	1172, 1203, 1224, 2038, 2344
HapII	CCGG	4 cut(s)	68, 635, 1440, 2456
HgaI	GACGC	3 cut(s)	188, 211, 415
HhaI	GCGC	2 cut(s)	340, 2327
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	9 cut(s)	509, 779, 965, 1363, 1417, 1847, 1967, 2232, 2499
Hin6I	GCGC	2 cut(s)	338, 2325
HinP1I	GCGC	2 cut(s)	338, 2325
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HpaII	CCGG	4 cut(s)	68, 635, 1440, 2456
Hpy166II	GTNNAC	7 cut(s)	754, 1025, 1033, 1638, 1764, 1876, 2482
Hpy188I	TCNGA	9 cut(s)	35, 83, 227, 274, 496, 1447, 1785, 2272, 2394
Hpy8I	GTNNAC	7 cut(s)	754, 1025, 1033, 1638, 1764, 1876, 2482
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	55, 142, 401, 954, 1060
HpyCH4III	ACNGT	5 cut(s)	199, 631, 696, 1121, 2385
HpyCH4IV	ACGT	2 cut(s)	1027, 1111
HpyF3I	CTNAG	7 cut(s)	186, 437, 564, 744, 1494, 1858, 2334
HpySE526I	ACGT	2 cut(s)	1027, 1111
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	9 cut(s)	509, 779, 965, 1363, 1417, 1847, 1967, 2232, 2499
HspAI	GCGC	2 cut(s)	338, 2325
Ksp22I	TGATCA	3 cut(s)	1123, 1516, 1693
Kzo9I	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	8 cut(s)	71, 121, 246, 502, 511, 688, 1039, 1840
LweI	GCATC	8 cut(s)	80, 358, 915, 984, 1183, 1262, 1569, 2276
MabI	ACCWGGT	2 cut(s)	1228, 2083
MaeI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241
MaeII	ACGT	2 cut(s)	1027, 1111
MaeIII	GTNAC	4 cut(s)	385, 878, 2356, 2365
MalI	GATC	8 cut(s)	158, 717, 1053, 1125, 1461, 1518, 1695, 2253
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
MflI	RGATCY	1 cut(s)	2251
MhlI	GDGCHC	5 cut(s)	251, 346, 876, 1878, 2346
MluCI	AATT	9 cut(s)	84, 524, 812, 833, 1079, 1428, 1677, 1798, 2168
MlyI	GAGTC	1 cut(s)	1365
MmeI	TCCRAC	1 cut(s)	205
MroXI	GAANNNNTTC	2 cut(s)	232, 943
MseI	TTAA	5 cut(s)	977, 987, 1094, 1676, 1706
MslI	CAYNNNNRTG	1 cut(s)	2227
MspA1I	CMGCKG	4 cut(s)	1153, 1826, 2321, 2351
MspI	CCGG	4 cut(s)	68, 635, 1440, 2456
Mva1269I	GAATGC	2 cut(s)	162, 945
MvnI	CGCG	2 cut(s)	340, 1684
NciI	CCSGG	2 cut(s)	69, 635
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
NheI	GCTAGC	1 cut(s)	665
NlaIII	CATG	9 cut(s)	509, 779, 965, 1363, 1417, 1847, 1967, 2232, 2499
NlaIV	GGNNCC	2 cut(s)	204, 2344
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	878, 2356
NspI	RCATGY	4 cut(s)	509, 779, 965, 1363
PaeI	GCATGC	2 cut(s)	965, 1363
PagI	TCATGA	1 cut(s)	1963
PasI	CCCWGGG	2 cut(s)	1059, 1273
PciI	ACATGT	1 cut(s)	775
PciSI	GCTCTTC	1 cut(s)	864
PctI	GAATGC	2 cut(s)	162, 945
PdmI	GAANNNNTTC	2 cut(s)	232, 943
PfeI	GAWTC	9 cut(s)	8, 36, 233, 275, 298, 420, 707, 1786, 2207
PflFI	GACNNNGTC	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	1235
PfoI	TCCNGGA	1 cut(s)	429
PinAI	ACCGGT	2 cut(s)	1439, 2455
PleI	GAGTC	1 cut(s)	1365
PmaCI	CACGTG	1 cut(s)	1028
PmlI	CACGTG	1 cut(s)	1028
PpsI	GAGTC	1 cut(s)	1365
Ppu21I	YACGTR	1 cut(s)	1028
PpuMI	RGGWCCY	1 cut(s)	203
PscI	ACATGT	1 cut(s)	775
PsiI	TTATAA	1 cut(s)	2201
Psp124BI	GAGCTC	2 cut(s)	251, 876
Psp5II	RGGWCCY	1 cut(s)	203
PspCI	CACGTG	1 cut(s)	1028
PspFI	CCCAGC	2 cut(s)	101, 1002
PspN4I	GGNNCC	2 cut(s)	204, 2344
PspOMI	GGGCCC	1 cut(s)	2342
PspPI	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
PspPPI	RGGWCCY	1 cut(s)	203
PsrI	GAACNNNNNNTAC	2 cut(s)	442, 474
PstI	CTGCAG	2 cut(s)	1825, 2068
PsuI	RGATCY	1 cut(s)	2251
PsyI	GACNNNGTC	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	1826
RsaI	GTAC	3 cut(s)	1763, 2331, 2451
RsaNI	GTAC	3 cut(s)	1762, 2330, 2450
RseI	CAYNNNNRTG	1 cut(s)	2227
SacI	GAGCTC	2 cut(s)	251, 876
SalI	GTCGAC	1 cut(s)	752
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	5 cut(s)	977, 987, 1094, 1676, 1706
Sau3AI	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
Sau96I	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
SchI	GAGTC	1 cut(s)	1365
SduI	GDGCHC	5 cut(s)	251, 346, 876, 1878, 2346
SexAI	ACCWGGT	2 cut(s)	1228, 2083
SfaNI	GCATC	8 cut(s)	80, 358, 915, 984, 1183, 1262, 1569, 2276
SfcI	CTRYAG	3 cut(s)	1821, 2064, 2145
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	2227
SmlI	CTYRAG	3 cut(s)	216, 355, 581
SmoI	CTYRAG	3 cut(s)	216, 355, 581
SphI	GCATGC	2 cut(s)	965, 1363
Sse9I	AATT	9 cut(s)	84, 524, 812, 833, 1079, 1428, 1677, 1798, 2168
SsiI	CCGC	9 cut(s)	5, 244, 909, 1153, 1682, 1838, 2156, 2319, 2349
SspI	AATATT	1 cut(s)	1166
SspMI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241
SstI	GAGCTC	2 cut(s)	251, 876
StyI	CCWWGG	2 cut(s)	1300, 2042
TaaI	ACNGT	5 cut(s)	199, 631, 696, 1121, 2385
TaiI	ACGT	2 cut(s)	1030, 1114
TaqI	TCGA	5 cut(s)	15, 88, 175, 753, 1330
TasI	AATT	9 cut(s)	84, 524, 812, 833, 1079, 1428, 1677, 1798, 2168
TauI	GCSGC	1 cut(s)	911
TfiI	GAWTC	9 cut(s)	8, 36, 233, 275, 298, 420, 707, 1786, 2207
Tru1I	TTAA	5 cut(s)	977, 987, 1094, 1676, 1706
Tru9I	TTAA	5 cut(s)	977, 987, 1094, 1676, 1706
TscAI	CASTG	8 cut(s)	112, 1126, 1866, 2004, 2185, 2229, 2367, 2388
TseFI	GTSAC	2 cut(s)	878, 2356
Tsp45I	GTSAC	2 cut(s)	878, 2356
TspDTI	ATGAA	8 cut(s)	302, 517, 629, 909, 1440, 1860, 2289, 2294
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	8 cut(s)	112, 1126, 1866, 2004, 2185, 2229, 2367, 2388
Tth111I	GACNNNGTC	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	1235
VneI	GTGCAC	1 cut(s)	1874
VpaK11BI	GGWCC	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	1547
XapI	RAATTY	5 cut(s)	84, 524, 833, 1079, 1798
XceI	RCATGY	4 cut(s)	509, 779, 965, 1363
XmiI	GTMKAC	3 cut(s)	753, 1637, 2481
XmnI	GAANNNNTTC	2 cut(s)	232, 943
XspI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.