Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008758

Physical Location & Seq

Genomic Coordinates Reverse (-)

4520279 .. 4529562

Gene Structure 9284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGGCGGAATCGGTGGAGCTTCCCACTCGCCTCGGCATCCTTCCTTTCCGAAACAAGGTCCTCTTACCCGGCGCCATCATTCGAATTCGCTGCACTTCCCCCAGCAGTGTCAAATTGGTGGAGCAAGAGTTATGGCAGCGCGAAGAGAAGGGGTTAATTGGTATTCTTCCCGTTCGAGATGCTGCCGAGGCTGCAACAGTGGCCCCTGTGTTGTCTCAAGGTGTGGGAAGTGATTCTGGTGAACGAAGCTCTAGAGTTCAAGTTGGTACTTCCGATTCTCACAGGCCAGACGGAAAAAATCAGCAGGAAGTTATTCACTGGCATACAAGGGGAGTTGCTGCACGGGCTTTACATCTCTCAAGAGGAGTTGAGAAGCCAAGTGGGAGGGTTACATATGTAGTTGTCCTTGAAGGCTTGTGTAGATTCAACGTCCAGGAACTTAGCACACGGGGAACATATTATACTGCACGAATATCTCCACTTGAAATGACAAAGTCTGAAATGGAGCAAGTGGAGCAAGATCCAGAGTTCATATCATTATCTCGCCAATTCAAAGCAACTGCTACGGAGCTGATTTCTGTTCTTGAGCAGAAACAAAAGACCGGAGGAAGAACAAAAGTTCTTCTGGAGACAGTTCCGGTTCACAAGTTGGCAGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAGGAGCAACTGTGTATGTTGGATTCAGTTGATCTGAAAGTAAGACTTTCCAAAGCTACTGAGCTAGTTGACAGGCATTTGCAGTCTATTCATGTAGCAGAGAAGATTACGCAAAAAGTTGAGGGTCAATTATCAAAATCGCAGAAAGAGTTTCTTTTGCGCCAGCAGATGAGAGCTATAAAAGAGGAGCTTGGCGACAATGATGACGATGAAGACGATGTTGTTGCTCTGGAAAGAAAGATGCAAAGTTCAGGAATGCCTTCAAACATCTGGAAGCACGCACAGAGAGAGCTGAGGAGACTGAAAAAGATGCAACCCCAACAACCTGGATATAATAGTTCACGTGTTTACCTAGAGCTTCTCGCTGATCTTCCCTGGCAGAAGGCCAGTGAAGAATATGAATTGGATTTAAGGGCTGCAAAAGAACGTCTTGACAGTGATCACTATGGTTTAACTAAGGTCAAACAGCGGATTATTGAATATCTGGCTGTTCGCAAGCTCAAACCAGATGCCAGAGGCCCAGTGTTGTGTTTTGTTGGCCCGCCTGGTGTTGGAAAAACATCTTTGGCGTCATCTATTGCTGCTGCTTTGGGCAGAAAATTTATACGCATATCCCTTGGTGGTGTAAAGGATGAAGCTGATATCCGAGGACACAGGAGGACATACATTGGAAGCATGCCGGGTAGGCTCATTGATGGACTAAAGAAAGTAGCTGTTTCCAACCCGGTCATGCTGCTAGATGAAATTGACAAGACAGGTTCTGATGTGCGTGGTGATCCAGCTTCAGCTCTACTGGAGGTTCTTGATCCTGAGCAAAATAAAACATTCAATGATCACTATTTGAATGTTCCCTTCGACCTTTCAAAGGTGATTTTTGTGGCAACTGCAAATAGGGTGCAGCCGATTCCCCCACCACTCTTGGACAGGATGGAAGTTATTGAGCTGCCTGGATATACACCCGAAGAAAAGCTGAAGATAGCCATGCACCATTTAATTCCCCGAGTTCTTGATCAGCATGGGTTGAATTCTGAGTTTCTTAGAATCCCAGAGGCCATGGTGAAACTTATCATTCAAGGGTACACTAGGGAGGCTGGTGTTCGGAATCTGGAGAGAAACTTAGCTGCCTTGGCTCGTGCAGCTGCAGTAAAAGTTGCAGAGCAAGAACAAGCTGTCCCTCTGAGGAAAGATGTGCACTCGCTTGCTTCACCACTACTCGAAAACAGACTTGCTGATGGAGCTGAAGTGGAAATGGAGGTTATTCCGATGGGTGTGAATAAGCATGAGATATCAAGCGCTTTCAAGATTGATTCGCCATTGGTTGTGGATGAGGATATGCTGGAGAAAGTATTAGGGCCTCCAAGGTTTGATGACAAAGAAGCTGCAGAACGAGTTGCAACACCAGGTGTTTCTGTTGGGCTTGTTTGGACTGCTTTTGGTGGAGAGGTTCAATTTGTGGAGGCCACAGCAATGGGGGGAAAGGGTGAACTGCATCTCACTGGTCAACTTGGAGATGTTATCAAAGAATCAGCACAAATAGCATTGACATGGGTGAGAGGCAGGGCAAAAGATCTTAAGTTCGCAACAGCTGAGGCAGCCAATCTTTTGGAGGGTCGGGATGTTCATATACACTTTCCTGCTGGGGCTGTACCGAAGGATGGACCCTCAGCAGGTGTGACTCTGGTAACAGCACTGGTTTCATTGTTCTGTCAGAGAAGAGTAAGAGCAGATACAGCAATGACTGGAGAAATGACATTGAGGGGTCTCGTACTACCTGTTGGTGGTGTCAAGGACAAGGTATTGGCAGCCCACCGTTGTGGTATTACAAGAGTCATTCTTCCAGAGAGGAATCTGAAGGATTTAACTGATGTACCGTCGGCTGTTCTTTCTGGTCTTGAGATAATACTAGCAAAGCGAATGGAAGATGTATTAGAGCAGGCTTTTGAAGGCGGATGTCCCTGGAGACAGCACTCAAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006139 GO:0006259 GO:0006508 GO:0006605 GO:0006625 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015919 GO:0016043 GO:0016485 GO:0016558 GO:0016560 GO:0017038 GO:0019538 GO:0022622 GO:0031907 GO:0031974 GO:0032042 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0040007 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043574 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0090304 GO:0090696 GO:0099402 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

889

Amino Acids

98.05

Weight (kDa)

6.76

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47040
fragaria_vesca	FvH4_5g20910 FvH4_5g20910
malus_domestica	MD06G1043200.v1.1 MD16G1267600.v1.1
prunus_persica	Prupe.5G050100_v2.0.a1 Prupe.5G050100_v2.0.a1
pyrus_communis	pycom06g03620 pycom16g23700 pycom16g23710
rosa_chinensis	RchiOBHm_Chr7g0207901
rosa_laevigata	RLG00000003277
rosa_multiflora	Rmu_co8377115.1_g000001 Rmu_sc0006577.1_g000003
rosa_roxburghii	Rroxscaffold_3G00251060
rosa_rugosa	Rorug07G0100200 Rorug07G0100200
rosa_samantha	Rh7AG233500 Rh7BG229100 Rh7CG248800 Rh7DG239500
rosa_wichuraiana	Rw0G001300 Rw7G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2345
Acc36I	ACCTGC	1 cut(s)	2345
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	141
AciI	CCGC	4 cut(s)	5, 1156, 1229, 2634
AclWI	GGATC	3 cut(s)	515, 1457, 1487
AcsI	RAATTY	3 cut(s)	84, 1286, 1711
AcuI	CTGAAG	4 cut(s)	1455, 1679, 1947, 2558
AcvI	CACGTG	1 cut(s)	1031
AcyI	GRCGYC	2 cut(s)	72, 1256
AdeI	CACNNNGTG	1 cut(s)	2090
AfaI	GTAC	5 cut(s)	268, 1766, 2334, 2454, 2556
AfeI	AGCGCT	1 cut(s)	1981
AfiI	CCNNNNNNNGG	6 cut(s)	55, 1238, 1552, 2342, 2354, 2465
AflII	CTTAAG	1 cut(s)	2258
AflIII	ACRYGT	1 cut(s)	1030
AjnI	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1633, 2086, 2642
AleI	CACNNNNGTG	1 cut(s)	2499
AloI	GAACNNNNNNTCC	2 cut(s)	1842, 1874
Alw21I	GWGCWC	1 cut(s)	1881
Alw26I	GTCTC	5 cut(s)	219, 623, 979, 2453, 2641
Alw44I	GTGCAC	1 cut(s)	1877
AlwI	GGATC	3 cut(s)	515, 1457, 1487
AlwNI	CAGNNNCTG	1 cut(s)	1448
Ama87I	CYCGRG	1 cut(s)	1686
Aor51HI	AGCGCT	1 cut(s)	1981
AoxI	GGCC	8 cut(s)	201, 284, 1071, 1204, 1225, 1737, 2039, 2145
ApaLI	GTGCAC	1 cut(s)	1877
ApoI	RAATTY	3 cut(s)	84, 1286, 1711
Asp700I	GAANNNNTTC	3 cut(s)	232, 312, 946
AspLEI	GCGC	4 cut(s)	74, 141, 849, 1982
AspS9I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
AsuC2I	CCSGG	3 cut(s)	69, 1368, 1412
AsuHPI	GGTGA	7 cut(s)	251, 1472, 1567, 1756, 1884, 2180, 2248
AsuII	TTCGAA	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	1686
AvaII	GGWCC	2 cut(s)	58, 2345
BaeGI	GKGCMC	1 cut(s)	1881
BaeI	ACNNNNGTAYC	2 cut(s)	2538, 2571
BanI	GGYRCC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	1818
BbrPI	CACGTG	1 cut(s)	1031
BbsI	GAAGAC	1 cut(s)	906
Bbv12I	GWGCWC	1 cut(s)	1881
BbvCI	CCTCAGC	3 cut(s)	980, 2274, 2350
BccI	CCATC	6 cut(s)	83, 1376, 1609, 1913, 1945, 2336
BcgI	CGANNNNNNTGC	4 cut(s)	72, 106, 893, 927
BciT130I	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
BclI	TGATCA	3 cut(s)	1126, 1519, 1696
BcnI	CCSGG	3 cut(s)	69, 1368, 1412
BcoDI	GTCTC	5 cut(s)	219, 623, 979, 2453, 2641
BfaI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591
BfmI	CTRYAG	2 cut(s)	1827, 2067
BfoI	RGCGCY	2 cut(s)	75, 1983
BfrI	CTTAAG	1 cut(s)	2258
BfuAI	ACCTGC	1 cut(s)	2345
BglI	GCCNNNNNGGC	1 cut(s)	1372
BglII	AGATCT	1 cut(s)	2254
Bme18I	GGWCC	2 cut(s)	58, 2345
BmeT110I	CYCGRG	1 cut(s)	1686
BmgT120I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
BmiI	GGNNCC	3 cut(s)	73, 204, 2347
BmrI	ACTGGG	1 cut(s)	1202
BmsI	GCATC	6 cut(s)	45, 169, 918, 987, 1186, 2185
BmtI	GCTAGC	1 cut(s)	672
BmuI	ACTGGG	1 cut(s)	1202
BpiI	GAAGAC	1 cut(s)	906
BpmI	CTGGAG	6 cut(s)	647, 1502, 1814, 2045, 2448, 2665
Bpu10I	CCTNAGC	4 cut(s)	980, 1497, 2274, 2350
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	4 cut(s)	201, 343, 605, 2600
BpuMI	CCSGG	3 cut(s)	69, 1368, 1412
BsaAI	YACGTR	1 cut(s)	1031
BsaHI	GRCGYC	2 cut(s)	72, 1256
BsaI	GGTCTC	1 cut(s)	2453
BsaJI	CCNNGG	9 cut(s)	31, 186, 1061, 1303, 1333, 1740, 1812, 2045, 2642
BsaWI	WCCGGW	2 cut(s)	602, 637
BsaXI	ACNNNNNCTCC	6 cut(s)	113, 143, 683, 713, 1914, 1944
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 1238, 1552, 2342, 2354, 2465
Bse1I	ACTGG	7 cut(s)	323, 1074, 1208, 1485, 2188, 2382, 2431
Bse3DI	GCAATG	2 cut(s)	2160, 2427
BseBI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
BseDI	CCNNGG	9 cut(s)	31, 186, 1061, 1303, 1333, 1740, 1812, 2045, 2642
BseGI	GGATG	7 cut(s)	36, 1324, 1620, 2017, 2308, 2347, 2642
BseLI	CCNNNNNNNGG	6 cut(s)	55, 1238, 1552, 2342, 2354, 2465
BseMI	GCAATG	2 cut(s)	2160, 2427
BseMII	CTCAG	7 cut(s)	738, 971, 1488, 1707, 1856, 2265, 2364
BseNI	ACTGG	7 cut(s)	323, 1074, 1208, 1485, 2188, 2382, 2431
BseRI	GAGGAG	4 cut(s)	378, 704, 887, 997
BseSI	GKGCMC	1 cut(s)	1881
BseYI	CCCAGC	2 cut(s)	101, 2324
BsgI	GTGCAG	5 cut(s)	76, 324, 450, 1604, 1842
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	1881
BsiHKCI	CYCGRG	1 cut(s)	1686
BsiSI	CCGG	5 cut(s)	69, 603, 638, 1367, 1412
BslFI	GGGAC	2 cut(s)	1844, 2625
BslI	CCNNNNNNNGG	6 cut(s)	55, 1238, 1552, 2342, 2354, 2465
BsmAI	GTCTC	5 cut(s)	219, 623, 979, 2453, 2641
BsmFI	GGGAC	2 cut(s)	1844, 2625
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
Bso31I	GGTCTC	1 cut(s)	2453
BsoBI	CYCGRG	1 cut(s)	1686
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	1881
Bsp143I	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
Bsp19I	CCATGG	1 cut(s)	1740
BspACI	CCGC	4 cut(s)	5, 1156, 1229, 2634
BspANI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
BspCNI	CTCAG	7 cut(s)	739, 972, 1489, 1708, 1857, 2266, 2363
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	73, 204, 2347
BspMAI	CTGCAG	2 cut(s)	1831, 2071
BspMI	ACCTGC	1 cut(s)	2345
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	3 cut(s)	515, 1457, 1487
BspT104I	TTCGAA	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	2258
BspTNI	GGTCTC	1 cut(s)	2453
BsrDI	GCAATG	2 cut(s)	2160, 2427
BsrI	ACTGG	7 cut(s)	323, 1074, 1208, 1485, 2188, 2382, 2431
BssECI	CCNNGG	9 cut(s)	31, 186, 1061, 1303, 1333, 1740, 1812, 2045, 2642
BssMI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
BssNI	GRCGYC	2 cut(s)	72, 1256
BssSI	CACGAG	1 cut(s)	1818
BssT1I	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
Bst2BI	CACGAG	1 cut(s)	1818
Bst2UI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
Bst4CI	ACNGT	6 cut(s)	199, 634, 699, 1124, 2498, 2559
Bst6I	CTCTTC	2 cut(s)	138, 2395
BstACI	GRCGYC	2 cut(s)	72, 1256
BstAFI	CTTAAG	1 cut(s)	2258
BstBAI	YACGTR	1 cut(s)	1031
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	8 cut(s)	670, 851, 966, 1184, 1229, 1364, 1887, 2622
BstDSI	CCRYGG	1 cut(s)	1740
BstENI	CCTNNNNNAGG	1 cut(s)	1550
BstF5I	GGATG	7 cut(s)	36, 1324, 1620, 2017, 2308, 2347, 2642
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	2 cut(s)	75, 1983
BstHHI	GCGC	4 cut(s)	74, 141, 849, 1982
BstKTI	GATC	9 cut(s)	523, 721, 1057, 1129, 1465, 1495, 1522, 1699, 2257
BstMAI	GTCTC	5 cut(s)	219, 623, 979, 2453, 2641
BstMBI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
BstNI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
BstNSI	RCATGY	1 cut(s)	1366
BstSFI	CTRYAG	2 cut(s)	1827, 2067
BstSLI	GKGCMC	1 cut(s)	1881
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	906
BstX2I	RGATCY	2 cut(s)	520, 2254
BstXI	CCANNNNNNTGG	4 cut(s)	1013, 2155, 2290, 2501
BstYI	RGATCY	2 cut(s)	520, 2254
BsuRI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
BtgI	CCRYGG	1 cut(s)	1740
BtsCI	GGATG	7 cut(s)	36, 1324, 1620, 2017, 2308, 2347, 2642
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	8 cut(s)	112, 204, 316, 1081, 1129, 1215, 2181, 2375
BveI	ACCTGC	1 cut(s)	2345
Cac8I	GCNNGC	8 cut(s)	670, 851, 966, 1184, 1229, 1364, 1887, 2622
CaiI	CAGNNNCTG	1 cut(s)	1448
CfoI	GCGC	4 cut(s)	74, 141, 849, 1982
Cfr13I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
CseI	GACGC	1 cut(s)	1245
CsiI	ACCWGGT	1 cut(s)	2086
Csp6I	GTAC	5 cut(s)	267, 1765, 2333, 2453, 2555
CspCI	CAANNNNNGTGG	2 cut(s)	1587, 1622
CviAII	CATG	8 cut(s)	779, 1363, 1417, 1669, 1703, 1741, 1967, 2232
CviQI	GTAC	5 cut(s)	267, 1765, 2333, 2453, 2555
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	9 cut(s)	522, 720, 1056, 1128, 1464, 1494, 1521, 1698, 2256
DpnII	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
DraIII	CACNNNGTG	1 cut(s)	2090
Eam1104I	CTCTTC	2 cut(s)	138, 2395
EarI	CTCTTC	2 cut(s)	138, 2395
EciI	GGCGGA	2 cut(s)	20, 2649
Eco130I	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
Eco31I	GGTCTC	1 cut(s)	2453
Eco32I	GATATC	2 cut(s)	1330, 1974
Eco47I	GGWCC	2 cut(s)	58, 2345
Eco47III	AGCGCT	1 cut(s)	1981
Eco57I	CTGAAG	4 cut(s)	1455, 1679, 1947, 2558
Eco72I	CACGTG	1 cut(s)	1031
Eco88I	CYCGRG	1 cut(s)	1686
EcoNI	CCTNNNNNAGG	1 cut(s)	1550
EcoO109I	RGGNCCY	2 cut(s)	58, 2039
EcoRI	GAATTC	2 cut(s)	84, 1711
EcoRII	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1633, 2086, 2642
EcoRV	GATATC	2 cut(s)	1330, 1974
EcoT14I	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
FaeI	CATG	8 cut(s)	782, 1366, 1420, 1672, 1706, 1744, 1970, 2235
FaqI	GGGAC	2 cut(s)	1844, 2625
FatI	CATG	8 cut(s)	778, 1362, 1416, 1668, 1702, 1740, 1966, 2231
FauI	CCCGC	1 cut(s)	1236
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	3 cut(s)	1126, 1519, 1696
FokI	GGATG	7 cut(s)	23, 1331, 1627, 2024, 2315, 2354, 2649
FspBI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591
GlaI	GCGC	4 cut(s)	73, 140, 848, 1981
GsaI	CCCAGC	2 cut(s)	105, 2328
GsuI	CTGGAG	6 cut(s)	647, 1502, 1814, 2045, 2448, 2665
HaeII	RGCGCY	2 cut(s)	75, 1983
HaeIII	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1739, 2041, 2147
HapII	CCGG	5 cut(s)	69, 603, 638, 1367, 1412
HgaI	GACGC	1 cut(s)	1245
HhaI	GCGC	4 cut(s)	74, 141, 849, 1982
Hin1I	GRCGYC	2 cut(s)	72, 1256
Hin1II	CATG	8 cut(s)	782, 1366, 1420, 1672, 1706, 1744, 1970, 2235
Hin6I	GCGC	4 cut(s)	72, 139, 847, 1980
HinP1I	GCGC	4 cut(s)	72, 139, 847, 1980
HincII	GTYRAC	2 cut(s)	757, 2189
HindII	GTYRAC	2 cut(s)	757, 2189
HpaII	CCGG	5 cut(s)	69, 603, 638, 1367, 1412
HphI	GGTGA	7 cut(s)	251, 1472, 1567, 1756, 1884, 2180, 2248
Hpy166II	GTNNAC	9 cut(s)	242, 643, 757, 1028, 1036, 1767, 1879, 2171, 2189
Hpy8I	GTNNAC	9 cut(s)	242, 643, 757, 1028, 1036, 1767, 1879, 2171, 2189
Hpy99I	CGWCG	1 cut(s)	2563
HpyAV	CCTTC	9 cut(s)	50, 142, 404, 957, 1063, 1549, 2332, 2533, 2624
HpyCH4III	ACNGT	6 cut(s)	199, 634, 699, 1124, 2498, 2559
HpyCH4IV	ACGT	3 cut(s)	429, 1030, 1114
HpySE526I	ACGT	3 cut(s)	429, 1030, 1114
Hsp92I	GRCGYC	2 cut(s)	72, 1256
Hsp92II	CATG	8 cut(s)	782, 1366, 1420, 1672, 1706, 1744, 1970, 2235
HspAI	GCGC	4 cut(s)	72, 139, 847, 1980
KasI	GGCGCC	1 cut(s)	71
Ksp22I	TGATCA	3 cut(s)	1126, 1519, 1696
Kzo9I	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
LmnI	GCTCC	8 cut(s)	16, 121, 505, 514, 568, 691, 874, 1922
LweI	GCATC	6 cut(s)	45, 169, 918, 987, 1186, 2185
MabI	ACCWGGT	1 cut(s)	2086
MaeI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591
MaeII	ACGT	3 cut(s)	429, 1030, 1114
MaeIII	GTNAC	3 cut(s)	388, 2359, 2368
MalI	GATC	9 cut(s)	522, 720, 1056, 1128, 1464, 1494, 1521, 1698, 2256
MboI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
MflI	RGATCY	2 cut(s)	520, 2254
MhlI	GDGCHC	1 cut(s)	1881
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	2356, 2523
MmeI	TCCRAC	3 cut(s)	687, 1219, 1431
MroXI	GAANNNNTTC	3 cut(s)	232, 312, 946
MseI	TTAA	6 cut(s)	155, 1097, 1139, 1679, 2259, 2546
MslI	CAYNNNNRTG	3 cut(s)	2153, 2230, 2499
MspA1I	CMGCKG	3 cut(s)	1156, 1826, 2273
MspCI	CTTAAG	1 cut(s)	2258
MspI	CCGG	5 cut(s)	69, 603, 638, 1367, 1412
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1635, 2088, 2644
MvnI	CGCG	1 cut(s)	141
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	3 cut(s)	69, 1368, 1412
NcoI	CCATGG	1 cut(s)	1740
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
NheI	GCTAGC	1 cut(s)	668
NlaIII	CATG	8 cut(s)	782, 1366, 1420, 1672, 1706, 1744, 1970, 2235
NlaIV	GGNNCC	3 cut(s)	73, 204, 2347
NmeAIII	GCCGAG	2 cut(s)	12, 211
NmuCI	GTSAC	1 cut(s)	2359
NspI	RCATGY	1 cut(s)	1366
NspV	TTCGAA	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	2499
PaeI	GCATGC	1 cut(s)	1366
PaqCI	CACCTGC	1 cut(s)	2345
PcsI	WCGNNNNNNNCGW	1 cut(s)	900
PctI	GAATGC	1 cut(s)	948
PdmI	GAANNNNTTC	3 cut(s)	232, 312, 946
PflFI	GACNNNGTC	1 cut(s)	493
PfoI	TCCNGGA	1 cut(s)	432
PleI	GAGTC	2 cut(s)	2356, 2522
PluTI	GGCGCC	1 cut(s)	75
PmaCI	CACGTG	1 cut(s)	1031
PmlI	CACGTG	1 cut(s)	1031
PpsI	GAGTC	2 cut(s)	2356, 2522
Ppu21I	YACGTR	1 cut(s)	1031
PpuMI	RGGWCCY	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1633, 2086, 2642
PspCI	CACGTG	1 cut(s)	1031
PspFI	CCCAGC	2 cut(s)	101, 2324
PspGI	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1633, 2086, 2642
PspN4I	GGNNCC	3 cut(s)	73, 204, 2347
PspPI	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
PspPPI	RGGWCCY	1 cut(s)	58
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PstI	CTGCAG	2 cut(s)	1831, 2071
PstNI	CAGNNNCTG	1 cut(s)	1448
PsuI	RGATCY	2 cut(s)	520, 2254
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	2 cut(s)	1826, 2273
RsaI	GTAC	5 cut(s)	268, 1766, 2334, 2454, 2556
RsaNI	GTAC	5 cut(s)	267, 1765, 2333, 2453, 2555
RseI	CAYNNNNRTG	3 cut(s)	2153, 2230, 2499
SaqAI	TTAA	6 cut(s)	155, 1097, 1139, 1679, 2259, 2546
Sau3AI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1696, 2254
Sau96I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2039, 2345
SchI	GAGTC	2 cut(s)	2356, 2523
SduI	GDGCHC	1 cut(s)	1881
SexAI	ACCWGGT	1 cut(s)	2086
SfaNI	GCATC	6 cut(s)	45, 169, 918, 987, 1186, 2185
SfcI	CTRYAG	2 cut(s)	1827, 2067
SfoI	GGCGCC	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	2 cut(s)	58, 2345
SmiMI	CAYNNNNRTG	3 cut(s)	2153, 2230, 2499
SmlI	CTYRAG	5 cut(s)	216, 358, 584, 2258, 2579
SmoI	CTYRAG	5 cut(s)	216, 358, 584, 2258, 2579
SphI	GCATGC	1 cut(s)	1366
SsiI	CCGC	4 cut(s)	5, 1156, 1229, 2634
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591
StyI	CCWWGG	4 cut(s)	1303, 1740, 1812, 2045
TaaI	ACNGT	6 cut(s)	199, 634, 699, 1124, 2498, 2559
TaiI	ACGT	3 cut(s)	432, 1033, 1117
TaqI	TCGA	4 cut(s)	82, 175, 1542, 1902
Tru1I	TTAA	6 cut(s)	155, 1097, 1139, 1679, 2259, 2546
Tru9I	TTAA	6 cut(s)	155, 1097, 1139, 1679, 2259, 2546
TscAI	CASTG	8 cut(s)	112, 204, 323, 1081, 1129, 1215, 2188, 2382
TseFI	GTSAC	1 cut(s)	2359
Tsp45I	GTSAC	1 cut(s)	2359
TspDTI	ATGAA	8 cut(s)	520, 767, 912, 1101, 1335, 1443, 2297, 2373
TspGWI	ACGGA	2 cut(s)	306, 581
TspRI	CASTG	8 cut(s)	112, 204, 323, 1081, 1129, 1215, 2188, 2382
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	2258
VneI	GTGCAC	1 cut(s)	1877
VpaK11BI	GGWCC	2 cut(s)	58, 2345
XagI	CCTNNNNNAGG	1 cut(s)	1550
XapI	RAATTY	3 cut(s)	84, 1286, 1711
XbaI	TCTAGA	1 cut(s)	251
XceI	RCATGY	1 cut(s)	1366
XmnI	GAANNNNTTC	3 cut(s)	232, 312, 946
XspI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1770, 2591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.