Rorug07G0100200

ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
7928838 .. 7932596
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0100200.1

Sequence Viewer

Length: 1230 bp
ATGGACTGGAACTTGAAAGCACCATCTTCGTGGGATTTAAGTGAACTTGAGCAAGAAACCTTTTCCAACTTAGATACAGTTAATGGGTCTAGTAACCTTGGAGATCAACATAGGGCCATCAAAGGGGACTTTTCTGTTGATTTGAAGCTTGGTCAGTTGAGTGATTCAGGTAATAATCAGTTGGTGGACATGTTGAAGCAACATGGAGGTCCCAAACCTTCATCGTCATCGCCTTCCGGGGCTTCAAAGAGGTCAAGGGCAGCTTATAATGGATCCCAGACAGTTTCTTGCCTTGTTGACGGGTGTAGATCAGACCTTAGTACTTGTAGGGATTACCATAGGCGCCATAAGGTCTGTGAGCTGCATTCTAAGACTCCAATGGTCACAATTAATGGTCAGAAGCAACGATTCTGCCAGCAATGCAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAGAGAAGCTGCAGGAAACGTCTTGATGGACACAACCGTAGGAGAAGGAAGCCTCAACCCGAACCCTTGTCGCGTTCAGGAAGCTTCTTGTCCAACTACCAAGGTACCCAATTGTTGCCATTCTCTAGCTCACTTGTATATCCCTCCACCACTGTTGTGAACCCAACCTGGGCTGGAGTTGTCAAAGCTGAAGCCGATACGGGGCTTCATAACCAGCATCTACAACACCAGAACATGTTTATCGGGTCCTCAACCAGCAGCAGCAGCTACAATAAAGGAGCAGGGAACAAGCAGCAATTCACACTTTTCCAAAGTAGTAACAACAACCAAACTCATGGAGCTTCTGTCTGCCAGCCCCTTCTGAATAGCATTTCAATGTCAGAAACTGCTACTTCTGGGGCTGCTGCGTCTGAAAAGAGCAAAATGTTTTGTGACAGGTTAACAACAACTCGAATCCACCCCGATTCGGATTGTGCTCTCTCTCTTCTGTCATCACCGCAGACGCAGCAGCAGACATCTGAGATGGGTTTGAGACACATGATGCAGCAGCCTAATTCGATATCTCTCATGCACCACCACCGCCTCGGCCTTCATGGGAACAACAACAGCAACAGTATAGAGCCAATGGATTCAGTTCTGGTCTCCCATGGATCAAGTGACCATGCACATAATGTTCATCAGTCCTCAGGAATGTTCCACATGGGATCTGATGAGTCACAGGGACATCATCATCATCAGAGCCCTCAAACACTTCCCTTTCATTGGGAGTAG

Protein Analysis

409

Amino Acids

45.22

Weight (kDa)

8.32

Isoelectric Point (pI)

58.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 97 - 170 1.4e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 417
Acc65I GGTACC 1 cut(s) 563
AccB1I GGYRCC 2 cut(s) 342, 563
AccB7I CCANNNNNTGG 1 cut(s) 439
AccII CGCG 1 cut(s) 532
AciI CCGC 2 cut(s) 956, 1039
AclWI GGATC 4 cut(s) 267, 280, 1117, 1171
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 343
AfaI GTAC 2 cut(s) 322, 565
AfiI CCNNNNNNNGG 6 cut(s) 123, 439, 628, 660, 925, 1221
AflIII ACRYGT 2 cut(s) 189, 693
AgsI TTSAA 5 cut(s) 16, 145, 196, 246, 834
AjnI CCWGG 1 cut(s) 626
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 9 cut(s) 148, 263, 361, 468, 543, 588, 647, 726, 800
AluI AGCT 9 cut(s) 148, 263, 361, 468, 543, 588, 647, 726, 800
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 2 cut(s) 985, 1105
AlwI GGATC 4 cut(s) 267, 280, 1117, 1171
AlwNI CAGNNNCTG 1 cut(s) 845
AoxI GGCC 2 cut(s) 114, 1045
ApoI RAATTY 1 cut(s) 446
AseI ATTAAT 1 cut(s) 390
Asp718I GGTACC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 3 cut(s) 114, 209, 705
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 945
AvaII GGWCC 2 cut(s) 209, 705
AxyI CCTNAGG 1 cut(s) 1144
BaeI ACNNNNGTAYC 2 cut(s) 547, 580
BamHI GGATCC 1 cut(s) 272
BanI GGYRCC 2 cut(s) 342, 563
BanII GRGCYC 1 cut(s) 1202
Bbv12I GWGCWC 1 cut(s) 937
BccI CCATC 4 cut(s) 31, 125, 479, 976
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BciT130I CCWGG 1 cut(s) 628
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 985, 1105
BfaI CTAG 2 cut(s) 90, 585
BfmI CTRYAG 1 cut(s) 469
BfoI RGCGCY 1 cut(s) 346
BfuAI ACCTGC 1 cut(s) 417
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 2 cut(s) 238, 628
Bme18I GGWCC 2 cut(s) 209, 705
BmgT120I GGNCC 3 cut(s) 114, 209, 705
BmiI GGNNCC 6 cut(s) 211, 274, 344, 431, 565, 706
BmrFI CCNGG 2 cut(s) 238, 628
BmsI GCATC 2 cut(s) 685, 990
BpmI CTGGAG 2 cut(s) 461, 654
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 343
BsaI GGTCTC 1 cut(s) 1105
BsaJI CCNNGG 6 cut(s) 97, 237, 559, 627, 1042, 1105
BsaXI ACNNNNNCTCC 2 cut(s) 789, 819
Bsc4I CCNNNNNNNGG 6 cut(s) 123, 439, 628, 660, 925, 1221
Bse1I ACTGG 2 cut(s) 11, 444
Bse21I CCTNAGG 1 cut(s) 1144
Bse3DI GCAATG 1 cut(s) 425
BseBI CCWGG 1 cut(s) 628
BseDI CCNNGG 6 cut(s) 97, 237, 559, 627, 1042, 1105
BseLI CCNNNNNNNGG 6 cut(s) 123, 439, 628, 660, 925, 1221
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 2 cut(s) 969, 1158
BseNI ACTGG 2 cut(s) 11, 444
Bsh1236I CGCG 1 cut(s) 532
BshFI GGCC 2 cut(s) 116, 1047
BshNI GGYRCC 2 cut(s) 342, 563
BsiHKAI GWGCWC 1 cut(s) 937
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 3 cut(s) 140, 195, 1194
BslI CCNNNNNNNGG 6 cut(s) 123, 439, 628, 660, 925, 1221
BsmAI GTCTC 2 cut(s) 985, 1105
BsmFI GGGAC 3 cut(s) 140, 195, 1194
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 2 cut(s) 116, 1047
Bso31I GGTCTC 1 cut(s) 1105
Bsp1286I GDGCHC 2 cut(s) 937, 1202
Bsp143I GATC 5 cut(s) 103, 272, 308, 1109, 1163
Bsp19I CCATGG 1 cut(s) 1105
BspACI CCGC 2 cut(s) 956, 1039
BspANI GGCC 2 cut(s) 116, 1047
BspCNI CTCAG 2 cut(s) 970, 1157
BspFNI CGCG 1 cut(s) 532
BspLI GGNNCC 6 cut(s) 211, 274, 344, 431, 565, 706
BspMAI CTGCAG 1 cut(s) 473
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 4 cut(s) 267, 280, 1117, 1171
BspT107I GGYRCC 2 cut(s) 342, 563
BspTNI GGTCTC 1 cut(s) 1105
BsrDI GCAATG 1 cut(s) 425
BsrI ACTGG 2 cut(s) 11, 444
BssECI CCNNGG 6 cut(s) 97, 237, 559, 627, 1042, 1105
BssMI GATC 5 cut(s) 103, 272, 308, 1109, 1163
BssNI GRCGYC 1 cut(s) 343
BssT1I CCWWGG 3 cut(s) 97, 559, 1105
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 5 cut(s) 79, 283, 497, 613, 1073
Bst6I CTCTTC 1 cut(s) 948
BstACI GRCGYC 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 416, 812
BstDEI CTNAG 5 cut(s) 70, 317, 369, 978, 1144
BstDSI CCRYGG 1 cut(s) 1105
BstFNI CGCG 1 cut(s) 532
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 5 cut(s) 106, 275, 311, 1112, 1166
BstMAI GTCTC 2 cut(s) 985, 1105
BstMBI GATC 5 cut(s) 103, 272, 308, 1109, 1163
BstMWI GCNNNNNNNGC 3 cut(s) 420, 723, 964
BstNI CCWGG 1 cut(s) 628
BstNSI RCATGY 2 cut(s) 193, 697
BstSCI CCNGG 2 cut(s) 236, 626
BstSFI CTRYAG 1 cut(s) 469
BstUI CGCG 1 cut(s) 532
BstX2I RGATCY 2 cut(s) 272, 1163
BstXI CCANNNNNNTGG 2 cut(s) 30, 794
BstYI RGATCY 2 cut(s) 272, 1163
Bsu36I CCTNAGG 1 cut(s) 1144
BsuRI GGCC 2 cut(s) 116, 1047
BtgI CCRYGG 1 cut(s) 1105
BtgZI GCGATG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 437, 609
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 416, 812
CaiI CAGNNNCTG 1 cut(s) 845
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 3 cut(s) 114, 209, 705
CseI GACGC 2 cut(s) 855, 970
Csp6I GTAC 2 cut(s) 321, 564
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviQI GTAC 2 cut(s) 321, 564
DdeI CTNAG 5 cut(s) 70, 317, 369, 978, 1144
DinI GGCGCC 1 cut(s) 344
DpnI GATC 5 cut(s) 105, 274, 310, 1111, 1165
DpnII GATC 5 cut(s) 103, 272, 308, 1109, 1163
Eam1104I CTCTTC 1 cut(s) 948
EarI CTCTTC 1 cut(s) 948
Eco130I CCWWGG 3 cut(s) 97, 559, 1105
Eco24I GRGCYC 1 cut(s) 1202
Eco31I GGTCTC 1 cut(s) 1105
Eco32I GATATC 1 cut(s) 1020
Eco47I GGWCC 2 cut(s) 209, 705
Eco57I CTGAAG 1 cut(s) 669
Eco81I CCTNAGG 1 cut(s) 1144
EcoO109I RGGNCCY 2 cut(s) 209, 705
EcoRII CCWGG 1 cut(s) 626
EcoRV GATATC 1 cut(s) 1020
EcoT14I CCWWGG 3 cut(s) 97, 559, 1105
EcoT38I GRGCYC 1 cut(s) 1202
EgeI GGCGCC 1 cut(s) 344
EheI GGCGCC 1 cut(s) 344
ErhI CCWWGG 3 cut(s) 97, 559, 1105
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 3 cut(s) 140, 195, 1194
FriOI GRGCYC 1 cut(s) 1202
FspBI CTAG 2 cut(s) 90, 585
GlaI GCGC 1 cut(s) 344
GsuI CTGGAG 2 cut(s) 461, 654
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 2 cut(s) 116, 1047
HapII CCGG 1 cut(s) 237
HgaI GACGC 2 cut(s) 855, 970
HhaI GCGC 1 cut(s) 345
Hin1I GRCGYC 1 cut(s) 343
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HincII GTYRAC 2 cut(s) 298, 900
HindII GTYRAC 2 cut(s) 298, 900
HindIII AAGCTT 2 cut(s) 146, 541
HinfI GANTC 7 cut(s) 164, 373, 408, 912, 923, 1088, 1172
HpaI GTTAAC 1 cut(s) 900
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 945
Hpy166II GTNNAC 5 cut(s) 44, 187, 298, 619, 900
Hpy188I TCNGA 9 cut(s) 313, 399, 822, 841, 871, 928, 979, 1168, 1197
Hpy188III TCNNGA 3 cut(s) 482, 537, 1146
Hpy8I GTNNAC 5 cut(s) 44, 187, 298, 619, 900
HpyAV CCTTC 6 cut(s) 228, 243, 449, 498, 827, 1058
HpyCH4III ACNGT 5 cut(s) 79, 283, 497, 613, 1073
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 6 cut(s) 364, 423, 471, 1003, 1030, 1124
HpyF10VI GCNNNNNNNGC 3 cut(s) 420, 723, 964
HpyF3I CTNAG 5 cut(s) 70, 317, 369, 978, 1144
HpySE526I ACGT 1 cut(s) 478
Hsp92I GRCGYC 1 cut(s) 343
HspAI GCGC 1 cut(s) 343
KasI GGCGCC 1 cut(s) 342
KpnI GGTACC 1 cut(s) 567
KspAI GTTAAC 1 cut(s) 900
Kzo9I GATC 5 cut(s) 103, 272, 308, 1109, 1163
LmnI GCTCC 2 cut(s) 737, 797
LweI GCATC 2 cut(s) 685, 990
MaeI CTAG 2 cut(s) 90, 585
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 6 cut(s) 92, 382, 776, 890, 1115, 1173
MalI GATC 5 cut(s) 105, 274, 310, 1111, 1165
MboI GATC 5 cut(s) 103, 272, 308, 1109, 1163
MboII GAAGA 2 cut(s) 18, 935
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 2 cut(s) 272, 1163
MhlI GDGCHC 2 cut(s) 937, 1202
MluCI AATT 5 cut(s) 387, 446, 569, 755, 1012
Mly113I GGCGCC 1 cut(s) 343
MlyI GAGTC 2 cut(s) 367, 1181
MmeI TCCRAC 2 cut(s) 90, 576
MnlI CCTC 9 cut(s) 200, 243, 436, 522, 613, 718, 1052, 1153, 1212
MseI TTAA 4 cut(s) 38, 81, 390, 899
MslI CAYNNNNRTG 3 cut(s) 28, 614, 833
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 2 cut(s) 238, 628
MunI CAATTG 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 1 cut(s) 628
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 3 cut(s) 420, 723, 964
NarI GGCGCC 1 cut(s) 343
NciI CCSGG 1 cut(s) 238
NcoI CCATGG 1 cut(s) 1105
NdeII GATC 5 cut(s) 103, 272, 308, 1109, 1163
NlaIV GGNNCC 6 cut(s) 211, 274, 344, 431, 565, 706
NmeAIII GCCGAG 1 cut(s) 1023
NmuCI GTSAC 4 cut(s) 382, 890, 1115, 1173
NspI RCATGY 2 cut(s) 193, 697
OliI CACNNNNGTG 1 cut(s) 614
PciI ACATGT 2 cut(s) 189, 693
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 5 cut(s) 164, 408, 912, 923, 1088
PflMI CCANNNNNTGG 1 cut(s) 439
PleI GAGTC 2 cut(s) 367, 1180
PluTI GGCGCC 1 cut(s) 346
PpsI GAGTC 2 cut(s) 367, 1180
PpuMI RGGWCCY 2 cut(s) 209, 705
PscI ACATGT 2 cut(s) 189, 693
PshBI ATTAAT 1 cut(s) 390
PsiI TTATAA 1 cut(s) 267
Psp5II RGGWCCY 2 cut(s) 209, 705
Psp6I CCWGG 1 cut(s) 626
PspGI CCWGG 1 cut(s) 626
PspN4I GGNNCC 6 cut(s) 211, 274, 344, 431, 565, 706
PspPI GGNCC 3 cut(s) 114, 209, 705
PspPPI RGGWCCY 2 cut(s) 209, 705
PstI CTGCAG 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 2 cut(s) 272, 1163
RsaI GTAC 2 cut(s) 322, 565
RsaNI GTAC 2 cut(s) 321, 564
RseI CAYNNNNRTG 3 cut(s) 28, 614, 833
SaqAI TTAA 4 cut(s) 38, 81, 390, 899
Sau3AI GATC 5 cut(s) 103, 272, 308, 1109, 1163
Sau96I GGNCC 3 cut(s) 114, 209, 705
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 2 cut(s) 367, 1181
ScrFI CCNGG 2 cut(s) 238, 628
SduI GDGCHC 2 cut(s) 937, 1202
SfaNI GCATC 2 cut(s) 685, 990
SfcI CTRYAG 1 cut(s) 469
SfoI GGCGCC 1 cut(s) 344
SinI GGWCC 2 cut(s) 209, 705
SmiMI CAYNNNNRTG 3 cut(s) 28, 614, 833
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 5 cut(s) 387, 446, 569, 755, 1012
SsiI CCGC 2 cut(s) 956, 1039
SspDI GGCGCC 1 cut(s) 342
SspMI CTAG 2 cut(s) 90, 585
StyD4I CCNGG 2 cut(s) 236, 626
StyI CCWWGG 3 cut(s) 97, 559, 1105
TaaI ACNGT 5 cut(s) 79, 283, 497, 613, 1073
TaiI ACGT 1 cut(s) 481
TaqI TCGA 2 cut(s) 910, 1016
TasI AATT 5 cut(s) 387, 446, 569, 755, 1012
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 5 cut(s) 164, 408, 912, 923, 1088
Tru1I TTAA 4 cut(s) 38, 81, 390, 899
Tru9I TTAA 4 cut(s) 38, 81, 390, 899
TscAI CASTG 2 cut(s) 444, 616
TseFI GTSAC 4 cut(s) 382, 890, 1115, 1173
Tsp45I GTSAC 4 cut(s) 382, 890, 1115, 1173
TspDTI ATGAA 6 cut(s) 210, 468, 656, 1040, 1124, 1208
TspRI CASTG 2 cut(s) 444, 616
Van91I CCANNNNNTGG 1 cut(s) 439
VpaK11BI GGWCC 2 cut(s) 209, 705
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 1 cut(s) 446
XceI RCATGY 2 cut(s) 193, 697
XspI CTAG 2 cut(s) 90, 585
ZrmI AGTACT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.