Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008758

Physical Location & Seq

Genomic Coordinates Reverse (-)

44904105 .. 44913513

Gene Structure 9409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2664 bp

ATGGCGGAATCGGTCGAGCTTCCCAGTCGCCTCGGAATCCTCCCCTTCAAGAACAAGGTTCTCTTGCCGGGAGCTATCATCCGAATTCGGTGCACTTCACCGAGCAGTGTGAAGCTGGTGGAGCAAGAGTTATGGCAGAGGGAAGAGAAGGGATTGATCGGCATTCTTCCCGTTCGAGACGCCGCTGAGGCAGCAACCGTGGGTCCTATGTTGTCTCAAGGCATAGGAAGCGATTCTGGTGAGCGAAGCTCAAAAGTTCAAGTTGGCACATCGGATTCTCAAAGAGTGGATGGCAAGAATCAGCAGGATATTCATTGGCATACCAGGGGAGTTGCTGCGCGTGCTCTGCATCTCTCAAGAGGAGTTGAGAAGCCAAGTGGGAGGGTTACATATGTAGTTGTCCTTGAAGGTTTATGTAGATTCAGCGTCCAGGAACTTAGCACAAGAGGAACATATTATACTGCACGGATATCCCCTCTCGAAATGACAAAGTCTGAAATGGAGCATGTGGAGCAAGACCCTGAATTCATCACATTGTCTCGGCAGTTCAAAGCAACTGCTACTGAGCTTATTTCTGTTCTTGAGCAGAAGCAAAAAACTGGTGGAAGAACAAAAGTTCTTTTAGAGACTGTCCCGGTTCATAAGTTGGCAGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAGGAGCAACTGTCTATGTTAGATTCGGTTGATCTAAAAGTAAGACTTTCAAAAGCTACCGAGTTAGTCGACAGGCATTTGCAGTCTATACATGTAGCAGAGAAGATTACACAGAAAGTTGAGGGTCAATTATCAAAATCACAAAAAGAATTCCTTTTACGCCAGCAGATGAGAGCTATCAAGGAGGAGCTCGGTGACAATGATGATGATGAAGATGATGTAGCTGCCCTAGAAAGAAAGATGCAAAGTGCAGGAATGCCTTCAAATATCTGGAAGCATGCACAGAGGGAGTTAAGGAGGCTTAAAAAGATGCAACCCCAGCAACCTGGATATAATAGTTCACGTGTTTACCTGGAGCTACTTGCTGATCTTCCCTGGGAGAAGGCTACTGAAGAATTTGAGTTAGATTTAAGGGTTGCAAAAGAACGTCTTGACAGTGATCACTATGGTTTAGTCAAGGTCAAGCAGCGGATTATTGAATATTTGGCCGTTCGTAAGCTCAAACCAGATGCCAGAGGCCCTGTGTTGTGCTTTGTTGGCCCACCAGGTGTTGGGAAAACATCTTTGGCATCATCTATTGCTGCTGCCCTGGGCAGAAAGTTTATACGCATATCCCTTGGTGGTGTCAAGGATGAGGCTGATATTCGAGGGCATAGGAGGACATACATTGGAAGCATGCCAGGGAGACTCATTGATGGATTGAAGAGAGTAGCTGTTTGCAACCCTGTCATGCTGCTAGATGAAATTGACAAGACCGGTTCTGATGTGCGTGGTGATCCAGCTTCGGCTCTATTGGAGGTTCTTGACCCTGAGCAAAACAAAACTTTCAATGATCACTATTTGAATGTTCCATTTGACCTTTCAAAGGTGATTTTTGTGGCCACTGCAAATAGGATGCAGCCTATTCCACCTCCACTCTTGGACAGGATGGAAGTTATTGAGCTGCCTGGGTATACACCTGAAGAAAAGCTGAAGATAGCTATGCACCATTTAATTCCGCGAGTTCTTGATCAACACGGGTTAAGCACCGAGTTTCTTCAAATCCCAGAGGCGATGGTGAAACTTGTCATTCAGGGGTACACCAGAGAGGCTGGTGTTCGGAATCTGGAGAGGAATTTGGCTGCTTTGGCTCGTGCGGCAGCTGTGAGAGTTGCGGAGCATGAACAAGCTGTCTCAGTGAGCAAAGATGTGCACTCGCTTGCTTCACCGATAGTGGAAAGCAGACTAGCTGATGGAGGTGAAGTGGAAATGGAGGTTATTCCAATGGGTGCAACTAATCATGAGATATCAAGCACTTTCAAGATTTCTTCGCCACTGATTGTGGATGAGGATATGCTGGAAAAAGTATTAGGGCCTCCAAGGTTTGATGACAAGGAAGCTGCAGAACGGGTTGCAACACCTGGTGTATCGGTTGGGCTTGTTTGGACTTCTGTTGGTGGGGAGGTTCAGTTTGTGGAGGCTACAGCAATGGCGGGAAAGGGTGAATTACATCTCACTGGTCAGCTTGGAGATGTTATAAAAGAATCAGCACAGATAGCACTGACATGGGTAAGAGCTAGGGCAACAGATCTTATGTTGGCAGCATCGGATGAAACAAATCTTCTGGAGGGTCGGGATGTTCATATACATTTTCCCGCTGGCGCTGTACCTAAGGATGGGCCCTCCGCTGGTGTGACACTGGTAACTGCACTTGTTTCACTGTTCAGTCAGAAAAGAGTAAGGGCAGATACGGCAATGACTGGAGAAATGACATTGAGGGGTCTCGTACTACCGGTTGGTGGTATCAAGGATAAGGTGTTGGCAGCACACCGTTGTGGTATTAAAAGAGTCATTCTTCCGGAGAGAAATCTGAAGGACTTAACTGAGGTACCATCAGCGGTGCTTGCCGGTCTTGAGATTATAGTTGCAAAGCGAATGGAAGACGTATTAGAGCAGGCTTTTGAAGGTGGATGCCCTTGGAGACAGCATTCAAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006139 GO:0006259 GO:0006508 GO:0006605 GO:0006625 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015919 GO:0016043 GO:0016485 GO:0016558 GO:0016560 GO:0017038 GO:0019538 GO:0022622 GO:0031907 GO:0031974 GO:0032042 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0040007 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043574 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0090304 GO:0090696 GO:0099402 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

887

Amino Acids

97.7

Weight (kDa)

6.32

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	11 - 253	6.9e-29	ATP-dependent protease La (LON) substrate-binding domain
AAA	PF00004	404 - 541	2.1e-25	ATPase family associated with various cellular activities (AAA)
AAA_5	PF07728	404 - 538	6.6e-08	AAA domain (dynein-related subfamily)
Lon_lid	PF22667	566 - 617	2.7e-17	Lon protease AAA+ ATPase lid domain
Lon_C	PF05362	669 - 875	7e-78	Lon protease (S16) C-terminal proteolytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47040
fragaria_vesca	FvH4_5g20910 FvH4_5g20910
malus_domestica	MD06G1043200.v1.1 MD16G1267600.v1.1
prunus_persica	Prupe.5G050100_v2.0.a1 Prupe.5G050100_v2.0.a1
pyrus_communis	pycom06g03620 pycom16g23700 pycom16g23710
rosa_chinensis	RchiOBHm_Chr7g0207901
rosa_laevigata	RLG00000003277
rosa_multiflora	Rmu_co8377115.1_g000001 Rmu_sc0006577.1_g000003
rosa_roxburghii	Rroxscaffold_3G00251060
rosa_rugosa	Rorug07G0100200 Rorug07G0100200
rosa_samantha	Rh7AG233500 Rh7BG229100 Rh7CG248800 Rh7DG239500
rosa_wichuraiana	Rw0G001300 Rw7G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2201
Acc65I	GGTACC	1 cut(s)	2551
AccB1I	GGYRCC	1 cut(s)	2551
AccB7I	CCANNNNNTGG	1 cut(s)	1235
AccI	GTMKAC	2 cut(s)	753, 1637
AccII	CGCG	2 cut(s)	340, 1684
AccIII	TCCGGA	1 cut(s)	2521
AclWI	GGATC	1 cut(s)	1454
AcoI	YGGCCR	2 cut(s)	1170, 1563
AcsI	RAATTY	5 cut(s)	84, 524, 833, 1079, 1798
AcuI	CTGAAG	4 cut(s)	1095, 1665, 1676, 2555
AcvI	CACGTG	1 cut(s)	1028
AcyI	GRCGYC	1 cut(s)	180
AdeI	CACNNNGTG	2 cut(s)	1232, 2087
AfaI	GTAC	4 cut(s)	1763, 2331, 2451, 2553
AfiI	CCNNNNNNNGG	5 cut(s)	1235, 1549, 2339, 2351, 2462
AflIII	ACRYGT	2 cut(s)	775, 1027
AgeI	ACCGGT	2 cut(s)	1439, 2455
AjuI	GAANNNNNNNTTGG	2 cut(s)	1232, 1264
AleI	CACNNNNGTG	1 cut(s)	2496
Alw21I	GWGCWC	4 cut(s)	95, 346, 876, 1878
Alw26I	GTCTC	8 cut(s)	171, 219, 543, 620, 1363, 1861, 2450, 2638
Alw44I	GTGCAC	2 cut(s)	91, 1874
AlwI	GGATC	1 cut(s)	1454
Aor13HI	TCCGGA	1 cut(s)	2521
AoxI	GGCC	6 cut(s)	1170, 1201, 1222, 1563, 2036, 2342
ApaI	GGGCCC	1 cut(s)	2346
ApaLI	GTGCAC	2 cut(s)	91, 1874
ApoI	RAATTY	5 cut(s)	84, 524, 833, 1079, 1798
AsiGI	ACCGGT	2 cut(s)	1439, 2455
Asp700I	GAANNNNTTC	2 cut(s)	232, 943
Asp718I	GGTACC	1 cut(s)	2551
AspLEI	GCGC	2 cut(s)	340, 2327
AspS9I	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
AsuC2I	CCSGG	2 cut(s)	69, 635
AsuHPI	GGTGA	9 cut(s)	90, 251, 890, 1469, 1564, 1753, 1881, 1934, 2177
AsuNHI	GCTAGC	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	2334
BaeGI	GKGCMC	3 cut(s)	95, 1878, 2346
BaeI	ACNNNNGTAYC	2 cut(s)	2535, 2568
BalI	TGGCCA	1 cut(s)	1565
BanI	GGYRCC	1 cut(s)	2551
BanII	GRGCYC	2 cut(s)	876, 2346
BauI	CACGAG	1 cut(s)	1815
BbrPI	CACGTG	1 cut(s)	1028
BbsI	GAAGAC	1 cut(s)	2610
Bbv12I	GWGCWC	4 cut(s)	95, 346, 876, 1878
BbvCI	CCTCAGC	1 cut(s)	186
BccI	CCATC	7 cut(s)	284, 1373, 1606, 1732, 1910, 2333, 2563
BceAI	ACGGC	2 cut(s)	1157, 2430
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BclI	TGATCA	3 cut(s)	1123, 1516, 1693
BcnI	CCSGG	2 cut(s)	69, 635
BcoDI	GTCTC	8 cut(s)	171, 219, 543, 620, 1363, 1861, 2450, 2638
BfaI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241
BfmI	CTRYAG	2 cut(s)	2064, 2145
BfoI	RGCGCY	1 cut(s)	2328
BglI	GCCNNNNNGGC	1 cut(s)	188
BglII	AGATCT	1 cut(s)	2251
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
BmiI	GGNNCC	3 cut(s)	204, 2344, 2553
BmrI	ACTGGG	1 cut(s)	18
BmsI	GCATC	8 cut(s)	358, 915, 984, 1183, 1262, 1569, 2276, 2624
BmtI	GCTAGC	1 cut(s)	669
BmuI	ACTGGG	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	2610
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	4 cut(s)	1058, 1811, 2309, 2445
Bpu10I	CCTNAGC	2 cut(s)	186, 1494
BpuEI	CTTGAG	4 cut(s)	201, 340, 602, 2597
BpuMI	CCSGG	2 cut(s)	69, 635
BsaAI	YACGTR	1 cut(s)	1028
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	2450
BsaWI	WCCGGW	3 cut(s)	1439, 2455, 2521
BsaXI	ACNNNNNCTCC	8 cut(s)	113, 143, 680, 710, 1911, 1941, 2117, 2147
Bsc4I	CCNNNNNNNGG	5 cut(s)	1235, 1549, 2339, 2351, 2462
Bse118I	RCCGGY	3 cut(s)	1439, 2455, 2570
Bse1I	ACTGG	5 cut(s)	24, 604, 2185, 2367, 2428
Bse21I	CCTNAGG	1 cut(s)	2334
Bse3DI	GCAATG	2 cut(s)	2157, 2424
BseAI	TCCGGA	1 cut(s)	2521
BseLI	CCNNNNNNNGG	5 cut(s)	1235, 1549, 2339, 2351, 2462
BseMI	GCAATG	2 cut(s)	2157, 2424
BseMII	CTCAG	5 cut(s)	177, 555, 1485, 1872, 2538
BseNI	ACTGG	5 cut(s)	24, 604, 2185, 2367, 2428
BseRI	GAGGAG	3 cut(s)	375, 701, 884
BseSI	GKGCMC	3 cut(s)	95, 1878, 2346
BseYI	CCCAGC	1 cut(s)	1002
BsgI	GTGCAG	3 cut(s)	447, 954, 2355
Bsh1236I	CGCG	2 cut(s)	340, 1684
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	6 cut(s)	1172, 1203, 1224, 1565, 2038, 2344
BshNI	GGYRCC	1 cut(s)	2551
BshTI	ACCGGT	2 cut(s)	1439, 2455
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	4 cut(s)	95, 346, 876, 1878
BsiSI	CCGG	6 cut(s)	68, 635, 1440, 2456, 2522, 2571
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	5 cut(s)	1235, 1549, 2339, 2351, 2462
BsmAI	GTCTC	8 cut(s)	171, 219, 543, 620, 1363, 1861, 2450, 2638
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	3 cut(s)	162, 945, 2650
BsnI	GGCC	6 cut(s)	1172, 1203, 1224, 1565, 2038, 2344
Bso31I	GGTCTC	1 cut(s)	2450
Bsp120I	GGGCCC	1 cut(s)	2342
Bsp1286I	GDGCHC	5 cut(s)	95, 346, 876, 1878, 2346
Bsp13I	TCCGGA	1 cut(s)	2521
Bsp143I	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
BspANI	GGCC	6 cut(s)	1172, 1203, 1224, 1565, 2038, 2344
BspCNI	CTCAG	5 cut(s)	178, 556, 1486, 1871, 2539
BspEI	TCCGGA	1 cut(s)	2521
BspFNI	CGCG	2 cut(s)	340, 1684
BspHI	TCATGA	1 cut(s)	1963
BspLI	GGNNCC	3 cut(s)	204, 2344, 2553
BspMAI	CTGCAG	1 cut(s)	2068
BspOI	GCTAGC	1 cut(s)	669
BspPI	GGATC	1 cut(s)	1454
BspT107I	GGYRCC	1 cut(s)	2551
BspTNI	GGTCTC	1 cut(s)	2450
BsrDI	GCAATG	2 cut(s)	2157, 2424
BsrFI	RCCGGY	3 cut(s)	1439, 2455, 2570
BsrI	ACTGG	5 cut(s)	24, 604, 2185, 2367, 2428
BssAI	RCCGGY	3 cut(s)	1439, 2455, 2570
BssMI	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
BssNAI	GTATAC	1 cut(s)	1638
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	1815
BssT1I	CCWWGG	3 cut(s)	1300, 2042, 2639
Bst1107I	GTATAC	1 cut(s)	1638
Bst2BI	CACGAG	1 cut(s)	1815
Bst4CI	ACNGT	6 cut(s)	199, 631, 696, 1121, 2385, 2495
Bst6I	CTCTTC	2 cut(s)	138, 1382
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	1028
BstC8I	GCNNGC	9 cut(s)	342, 667, 848, 963, 1361, 1884, 2323, 2568, 2619
BstDEI	CTNAG	7 cut(s)	186, 437, 564, 1494, 1858, 2334, 2547
BstDSI	CCRYGG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	1547
BstFNI	CGCG	2 cut(s)	340, 1684
BstH2I	RGCGCY	1 cut(s)	2328
BstHHI	GCGC	2 cut(s)	340, 2327
BstKTI	GATC	8 cut(s)	159, 718, 1054, 1126, 1462, 1519, 1696, 2254
BstMAI	GTCTC	8 cut(s)	171, 219, 543, 620, 1363, 1861, 2450, 2638
BstMBI	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
BstMCI	CGRYCG	1 cut(s)	15
BstNSI	RCATGY	4 cut(s)	509, 779, 965, 1363
BstSFI	CTRYAG	2 cut(s)	2064, 2145
BstSLI	GKGCMC	3 cut(s)	95, 1878, 2346
BstUI	CGCG	2 cut(s)	340, 1684
BstV2I	GAAGAC	1 cut(s)	2610
BstX2I	RGATCY	1 cut(s)	2251
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	2251
BstZ17I	GTATAC	1 cut(s)	1638
Bsu36I	CCTNAGG	1 cut(s)	2334
BsuRI	GGCC	6 cut(s)	1172, 1203, 1224, 1565, 2038, 2344
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	1751
BtsI	GCAGTG	2 cut(s)	112, 1566
BtsIMutI	CAGTG	9 cut(s)	112, 1126, 1566, 1866, 1997, 2178, 2222, 2360, 2381
Cac8I	GCNNGC	9 cut(s)	342, 667, 848, 963, 1361, 1884, 2323, 2568, 2619
CciI	TCATGA	1 cut(s)	1963
CfoI	GCGC	2 cut(s)	340, 2327
Cfr10I	RCCGGY	3 cut(s)	1439, 2455, 2570
Cfr13I	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
CseI	GACGC	2 cut(s)	188, 415
CsiI	ACCWGGT	2 cut(s)	1228, 2083
Csp6I	GTAC	4 cut(s)	1762, 2330, 2450, 2552
CspAI	ACCGGT	2 cut(s)	1439, 2455
CviAII	CATG	8 cut(s)	506, 776, 962, 1360, 1414, 1844, 1964, 2229
CviQI	GTAC	4 cut(s)	1762, 2330, 2450, 2552
DdeI	CTNAG	7 cut(s)	186, 437, 564, 1494, 1858, 2334, 2547
DpnI	GATC	8 cut(s)	158, 717, 1053, 1125, 1461, 1518, 1695, 2253
DpnII	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
DraIII	CACNNNGTG	2 cut(s)	1232, 2087
EaeI	YGGCCR	2 cut(s)	1170, 1563
Eam1104I	CTCTTC	2 cut(s)	138, 1382
EarI	CTCTTC	2 cut(s)	138, 1382
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	874
Eco130I	CCWWGG	3 cut(s)	1300, 2042, 2639
Eco24I	GRGCYC	2 cut(s)	876, 2346
Eco31I	GGTCTC	1 cut(s)	2450
Eco32I	GATATC	2 cut(s)	471, 1971
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	4 cut(s)	1095, 1665, 1676, 2555
Eco72I	CACGTG	1 cut(s)	1028
Eco81I	CCTNAGG	1 cut(s)	2334
EcoICRI	GAGCTC	1 cut(s)	874
EcoNI	CCTNNNNNAGG	1 cut(s)	1547
EcoO109I	RGGNCCY	4 cut(s)	203, 1202, 2036, 2343
EcoRI	GAATTC	3 cut(s)	84, 524, 833
EcoRV	GATATC	2 cut(s)	471, 1971
EcoT14I	CCWWGG	3 cut(s)	1300, 2042, 2639
EcoT38I	GRGCYC	2 cut(s)	876, 2346
ErhI	CCWWGG	3 cut(s)	1300, 2042, 2639
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	8 cut(s)	509, 779, 965, 1363, 1417, 1847, 1967, 2232
FalI	AAGNNNNNCTT	8 cut(s)	47, 79, 714, 746, 822, 854, 1098, 1130
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	8 cut(s)	505, 775, 961, 1359, 1413, 1843, 1963, 2228
FauI	CCCGC	2 cut(s)	2149, 2326
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	3 cut(s)	1123, 1516, 1693
FblI	GTMKAC	2 cut(s)	753, 1637
FriOI	GRGCYC	2 cut(s)	876, 2346
FspBI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241
GlaI	GCGC	2 cut(s)	339, 2326
GsaI	CCCAGC	1 cut(s)	1006
GsuI	CTGGAG	4 cut(s)	1058, 1811, 2309, 2445
HaeII	RGCGCY	1 cut(s)	2328
HaeIII	GGCC	6 cut(s)	1172, 1203, 1224, 1565, 2038, 2344
HapII	CCGG	6 cut(s)	68, 635, 1440, 2456, 2522, 2571
HgaI	GACGC	2 cut(s)	188, 415
HhaI	GCGC	2 cut(s)	340, 2327
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	8 cut(s)	509, 779, 965, 1363, 1417, 1847, 1967, 2232
Hin6I	GCGC	2 cut(s)	338, 2325
HinP1I	GCGC	2 cut(s)	338, 2325
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HpaII	CCGG	6 cut(s)	68, 635, 1440, 2456, 2522, 2571
HphI	GGTGA	9 cut(s)	90, 251, 890, 1469, 1564, 1753, 1881, 1934, 2177
Hpy166II	GTNNAC	7 cut(s)	93, 754, 1025, 1033, 1638, 1764, 1876
Hpy188I	TCNGA	9 cut(s)	35, 83, 274, 496, 1447, 1785, 2272, 2394, 2535
Hpy8I	GTNNAC	7 cut(s)	93, 754, 1025, 1033, 1638, 1764, 1876
HpyAV	CCTTC	7 cut(s)	55, 142, 401, 954, 1060, 2530, 2621
HpyCH4III	ACNGT	6 cut(s)	199, 631, 696, 1121, 2385, 2495
HpyCH4IV	ACGT	3 cut(s)	1027, 1111, 2607
HpyF3I	CTNAG	7 cut(s)	186, 437, 564, 1494, 1858, 2334, 2547
HpySE526I	ACGT	3 cut(s)	1027, 1111, 2607
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	8 cut(s)	509, 779, 965, 1363, 1417, 1847, 1967, 2232
HspAI	GCGC	2 cut(s)	338, 2325
Kpn2I	TCCGGA	1 cut(s)	2521
KpnI	GGTACC	1 cut(s)	2555
Ksp22I	TGATCA	3 cut(s)	1123, 1516, 1693
Kzo9I	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
LmnI	GCTCC	8 cut(s)	71, 121, 502, 511, 688, 871, 1039, 1840
LweI	GCATC	8 cut(s)	358, 915, 984, 1183, 1262, 1569, 2276, 2624
MabI	ACCWGGT	2 cut(s)	1228, 2083
MaeI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241
MaeII	ACGT	3 cut(s)	1027, 1111, 2607
MaeIII	GTNAC	4 cut(s)	385, 878, 2356, 2365
MalI	GATC	8 cut(s)	158, 717, 1053, 1125, 1461, 1518, 1695, 2253
MboI	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
MflI	RGATCY	1 cut(s)	2251
MhlI	GDGCHC	5 cut(s)	95, 346, 876, 1878, 2346
MlsI	TGGCCA	1 cut(s)	1565
MluCI	AATT	9 cut(s)	84, 524, 812, 833, 1079, 1428, 1677, 1798, 2168
MluNI	TGGCCA	1 cut(s)	1565
MlyI	GAGTC	2 cut(s)	1365, 2520
Mox20I	TGGCCA	1 cut(s)	1565
MroI	TCCGGA	1 cut(s)	2521
MroXI	GAANNNNTTC	2 cut(s)	232, 943
MscI	TGGCCA	1 cut(s)	1565
MseI	TTAA	7 cut(s)	977, 987, 1094, 1676, 1706, 2505, 2543
MslI	CAYNNNNRTG	2 cut(s)	2227, 2496
Msp20I	TGGCCA	1 cut(s)	1565
MspA1I	CMGCKG	6 cut(s)	185, 1153, 1826, 2321, 2351, 2561
MspI	CCGG	6 cut(s)	68, 635, 1440, 2456, 2522, 2571
Mva1269I	GAATGC	3 cut(s)	162, 945, 2650
MvnI	CGCG	2 cut(s)	340, 1684
NciI	CCSGG	2 cut(s)	69, 635
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
NheI	GCTAGC	1 cut(s)	665
NlaIII	CATG	8 cut(s)	509, 779, 965, 1363, 1417, 1847, 1967, 2232
NlaIV	GGNNCC	3 cut(s)	204, 2344, 2553
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	878, 2356
NspI	RCATGY	4 cut(s)	509, 779, 965, 1363
OliI	CACNNNNGTG	1 cut(s)	2496
PaeI	GCATGC	2 cut(s)	965, 1363
PagI	TCATGA	1 cut(s)	1963
PasI	CCCWGGG	2 cut(s)	1059, 1273
PciI	ACATGT	1 cut(s)	775
PctI	GAATGC	3 cut(s)	162, 945, 2650
PdmI	GAANNNNTTC	2 cut(s)	232, 943
PfeI	GAWTC	9 cut(s)	8, 36, 233, 275, 298, 420, 707, 1786, 2207
PflFI	GACNNNGTC	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	1235
PfoI	TCCNGGA	1 cut(s)	429
PinAI	ACCGGT	2 cut(s)	1439, 2455
PleI	GAGTC	2 cut(s)	1365, 2519
PmaCI	CACGTG	1 cut(s)	1028
PmlI	CACGTG	1 cut(s)	1028
PpsI	GAGTC	2 cut(s)	1365, 2519
Ppu21I	YACGTR	1 cut(s)	1028
PpuMI	RGGWCCY	1 cut(s)	203
PscI	ACATGT	1 cut(s)	775
PsiI	TTATAA	1 cut(s)	2201
Psp124BI	GAGCTC	1 cut(s)	876
Psp5II	RGGWCCY	1 cut(s)	203
PspCI	CACGTG	1 cut(s)	1028
PspFI	CCCAGC	1 cut(s)	1002
PspN4I	GGNNCC	3 cut(s)	204, 2344, 2553
PspOMI	GGGCCC	1 cut(s)	2342
PspPI	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
PspPPI	RGGWCCY	1 cut(s)	203
PsrI	GAACNNNNNNTAC	2 cut(s)	442, 474
PstI	CTGCAG	1 cut(s)	2068
PsuI	RGATCY	1 cut(s)	2251
PsyI	GACNNNGTC	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	1826
RsaI	GTAC	4 cut(s)	1763, 2331, 2451, 2553
RsaNI	GTAC	4 cut(s)	1762, 2330, 2450, 2552
RseI	CAYNNNNRTG	2 cut(s)	2227, 2496
SacI	GAGCTC	1 cut(s)	876
SalI	GTCGAC	1 cut(s)	752
SaqAI	TTAA	7 cut(s)	977, 987, 1094, 1676, 1706, 2505, 2543
Sau3AI	GATC	8 cut(s)	156, 715, 1051, 1123, 1459, 1516, 1693, 2251
Sau96I	GGNCC	6 cut(s)	203, 1202, 1223, 2036, 2342, 2343
SchI	GAGTC	2 cut(s)	1365, 2520
SduI	GDGCHC	5 cut(s)	95, 346, 876, 1878, 2346
SexAI	ACCWGGT	2 cut(s)	1228, 2083
SfaNI	GCATC	8 cut(s)	358, 915, 984, 1183, 1262, 1569, 2276, 2624
SfcI	CTRYAG	2 cut(s)	2064, 2145
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	2227, 2496
SmlI	CTYRAG	4 cut(s)	216, 355, 581, 2576
SmoI	CTYRAG	4 cut(s)	216, 355, 581, 2576
SphI	GCATGC	2 cut(s)	965, 1363
Sse9I	AATT	9 cut(s)	84, 524, 812, 833, 1079, 1428, 1677, 1798, 2168
SspI	AATATT	1 cut(s)	1166
SspMI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241
SstI	GAGCTC	1 cut(s)	876
StyI	CCWWGG	3 cut(s)	1300, 2042, 2639
TaaI	ACNGT	6 cut(s)	199, 631, 696, 1121, 2385, 2495
TaiI	ACGT	3 cut(s)	1030, 1114, 2610
TaqI	TCGA	5 cut(s)	15, 175, 480, 753, 1330
TasI	AATT	9 cut(s)	84, 524, 812, 833, 1079, 1428, 1677, 1798, 2168
TauI	GCSGC	2 cut(s)	185, 1823
TfiI	GAWTC	9 cut(s)	8, 36, 233, 275, 298, 420, 707, 1786, 2207
Tru1I	TTAA	7 cut(s)	977, 987, 1094, 1676, 1706, 2505, 2543
Tru9I	TTAA	7 cut(s)	977, 987, 1094, 1676, 1706, 2505, 2543
TscAI	CASTG	9 cut(s)	112, 1126, 1573, 1866, 2004, 2185, 2229, 2367, 2388
TseFI	GTSAC	2 cut(s)	878, 2356
Tsp45I	GTSAC	2 cut(s)	878, 2356
TspDTI	ATGAA	8 cut(s)	302, 517, 629, 909, 1440, 1860, 2289, 2294
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	9 cut(s)	112, 1126, 1573, 1866, 2004, 2185, 2229, 2367, 2388
Tth111I	GACNNNGTC	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	1235
VneI	GTGCAC	2 cut(s)	91, 1874
VpaK11BI	GGWCC	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	1547
XapI	RAATTY	5 cut(s)	84, 524, 833, 1079, 1798
XceI	RCATGY	4 cut(s)	509, 779, 965, 1363
XmiI	GTMKAC	2 cut(s)	753, 1637
XmnI	GAANNNNTTC	2 cut(s)	232, 943
XspI	CTAG	5 cut(s)	666, 914, 1421, 1910, 2241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.