Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377115.1

Orthogroup ID

OG0008758

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1015

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 337 bp

catggcggaatcggtcgagcttcccagtcgcctcggaatcctccccttcaagaacaaggttcttttgccgggagctatcatccgaattcggtgcacttcacccagcagtgtgaagcttgtggagcaggagttatggcagagggaagagaagggattgatcggcattcttcccgttcgagacgccgctgaggcagcaaccgtgggtcctgtgttgtctcaaggcgtcggaagtgattctggtgagcggagctcaaaagttcaagttggcacatctgattcgcaaagagtggatggcaagaatcagcaggatattcattggcataccaggtatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006139 GO:0006259 GO:0006508 GO:0006605 GO:0006625 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015919 GO:0016043 GO:0016485 GO:0016558 GO:0016560 GO:0017038 GO:0019538 GO:0022622 GO:0031907 GO:0031974 GO:0032042 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0040007 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043574 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0090304 GO:0090696 GO:0099402 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

111

Amino Acids

12.08

Weight (kDa)

7.92

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47040
fragaria_vesca	FvH4_5g20910 FvH4_5g20910
malus_domestica	MD06G1043200.v1.1 MD16G1267600.v1.1
prunus_persica	Prupe.5G050100_v2.0.a1 Prupe.5G050100_v2.0.a1
pyrus_communis	pycom06g03620 pycom16g23700 pycom16g23710
rosa_chinensis	RchiOBHm_Chr7g0207901
rosa_laevigata	RLG00000003277
rosa_multiflora	Rmu_co8377115.1_g000001 Rmu_sc0006577.1_g000003
rosa_roxburghii	Rroxscaffold_3G00251060
rosa_rugosa	Rorug07G0100200 Rorug07G0100200
rosa_samantha	Rh7AG233500 Rh7BG229100 Rh7CG248800 Rh7DG239500
rosa_wichuraiana	Rw0G001300 Rw7G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	245
AciI	CCGC	3 cut(s)	6, 184, 245
AcsI	RAATTY	1 cut(s)	85
AcyI	GRCGYC	2 cut(s)	181, 223
AgsI	TTSAA	2 cut(s)	50, 261
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	4 cut(s)	20, 75, 116, 250
AluI	AGCT	4 cut(s)	20, 75, 116, 250
Alw21I	GWGCWC	2 cut(s)	96, 252
Alw26I	GTCTC	2 cut(s)	172, 220
Alw44I	GTGCAC	1 cut(s)	92
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	91, 252
AvaII	GGWCC	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	96, 252
BbvCI	CCTCAGC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	285
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	172, 220
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	2 cut(s)	184, 193
BlsI	GCNGC	2 cut(s)	185, 194
Bme1390I	CCNGG	2 cut(s)	70, 326
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	70, 326
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
Bpu10I	CCTNAGC	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	70
BsaHI	GRCGYC	2 cut(s)	181, 223
BsaJI	CCNNGG	2 cut(s)	32, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	32, 199
BseGI	GGATG	2 cut(s)	79, 296
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	16
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	2 cut(s)	96, 252
BsiSI	CCGG	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	172, 220
BsmBI	CGTCTC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	96, 252
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	3 cut(s)	6, 184, 245
BspCNI	CTCAG	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	32, 199
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	2 cut(s)	181, 223
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	2 cut(s)	181, 223
BstDEI	CTNAG	1 cut(s)	187
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	79, 296
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	172, 220
BstMBI	GATC	1 cut(s)	157
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 189, 192
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	68, 324
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	79, 296
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	2 cut(s)	189, 212
CsiI	ACCWGGT	1 cut(s)	324
CviAII	CATG	1 cut(s)	2
CviJI	RGCY	4 cut(s)	20, 75, 116, 250
CviKI_1	RGCY	4 cut(s)	20, 75, 116, 250
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	172
FaiI	YATR	4 cut(s)	3, 134, 322, 331
Fnu4HI	GCNGC	2 cut(s)	184, 193
FokI	GGATG	2 cut(s)	66, 303
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	184, 193
GluI	GCNGC	2 cut(s)	184, 193
GsaI	CCCAGC	1 cut(s)	106
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	2 cut(s)	189, 212
Hin1I	GRCGYC	2 cut(s)	181, 223
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	5 cut(s)	9, 37, 234, 276, 299
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	91, 252
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	36, 84, 228, 275
Hpy188III	TCNNGA	2 cut(s)	50, 177
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	56, 143
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 189, 192
HpyF3I	CTNAG	1 cut(s)	187
Hsp92I	GRCGYC	2 cut(s)	181, 223
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	3 cut(s)	72, 122, 247
LpnPI	CCDG	8 cut(s)	38, 82, 111, 116, 220, 223, 291, 311
Lsp1109I	GCAGC	1 cut(s)	204
MabI	ACCWGGT	1 cut(s)	324
MalI	GATC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	245
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	156, 159
MhlI	GDGCHC	2 cut(s)	96, 252
MluCI	AATT	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	4 cut(s)	42, 51, 133, 182
MroXI	GAANNNNTTC	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	70, 326
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	122, 189, 192
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	5 cut(s)	9, 37, 234, 276, 299
PkrI	GCNGC	2 cut(s)	185, 194
PpuMI	RGGWCCY	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	204
PspPPI	RGGWCCY	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	252
SatI	GCNGC	2 cut(s)	184, 193
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	2 cut(s)	70, 326
SduI	GDGCHC	2 cut(s)	96, 252
SetI	ASST	6 cut(s)	22, 61, 77, 118, 252, 330
SexAI	ACCWGGT	1 cut(s)	324
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	3 cut(s)	6, 184, 245
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	68, 324
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	16, 176
TasI	AATT	1 cut(s)	85
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	5 cut(s)	9, 37, 234, 276, 299
TscAI	CASTG	1 cut(s)	113
TseI	GCWGC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	113
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.