Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0017729

Physical Location & Seq

Genomic Coordinates Forward (+)

5937215 .. 5937658

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1044200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTTGTATTAAACTTCACATGCATGGAAATGAAAGATAGAGAACAGCCTGAACATGCAAATTGCTCACCGGAAGGTCTGGTGAGGCAGGTAAAGATGGCGACCAAGAGTGCTGGAATTGACCTAGCAGGAGAAAATGCCCTGGAGAGGTATGACACTGGTGCGTTTGCACGAGTTCTAGCAACATGCAGCTCAGACTCCGGCAATGCCTTAAGTGCATTTACATATCTCCGAATGAACAAGAGATTGTTCGAGGGGGATAACTGGCGAAACATGGTTGAATTTGTTAGAAGCATGGCAGAAGGTGGCCGGAACAGAAGTCTTTTAGAGTGCGACTCTACCGGAAGCGACCTCTTTGCTCGTTTTATCAAAGAGAAGAAAGTCGAGAAAACCAAGGAAACTGTTCTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

138

Amino Acids

15.37

Weight (kDa)

6.6

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 95	4.6e-37	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017729)

Species	Orthologous Gene IDs
malus_domestica	MD06G1044200.v1.1
pyrus_communis	pycom06g03730
rosa_chinensis	RchiOBHm_Chr0c22g0500661 RchiOBHm_Chr7g0206591 RchiOBHm_Chr7g0207331 RchiOBHm_Chr7g0207681
rosa_multiflora	Rmu_co8257627.1_g000001 Rmu_sc0004987.1_g000004
rosa_rugosa	Rorug06G0115900
rosa_samantha	Rh7AG231300 Rh7AG232300 Rh7CG245000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflII	CTTAAG	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	60, 94
BauI	CACGAG	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	143
BfaI	CTAG	2 cut(s)	125, 179
BfrI	CTTAAG	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	141, 393
BsaWI	WCCGGW	2 cut(s)	70, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse1I	ACTGG	2 cut(s)	163, 269
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	141, 393
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	163, 269
BseXI	GCAGC	1 cut(s)	201
BshFI	GGCC	1 cut(s)	309
BsiSI	CCGG	4 cut(s)	71, 201, 310, 342
BslI	CCNNNNNNNGG	1 cut(s)	147
BsnI	GGCC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	163, 269
BssECI	CCNNGG	2 cut(s)	141, 393
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	403
BstAFI	CTTAAG	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	3 cut(s)	24, 59, 189
BstSCI	CCNGG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	79
CviAII	CATG	6 cut(s)	21, 25, 56, 186, 274, 295
CviJI	RGCY	3 cut(s)	49, 192, 309
CviKI_1	RGCY	3 cut(s)	49, 192, 309
DdeI	CTNAG	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	393
EcoT22I	ATGCAT	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	6 cut(s)	24, 28, 59, 189, 277, 298
FaiI	YATR	8 cut(s)	22, 26, 57, 153, 187, 226, 275, 296
FatI	CATG	6 cut(s)	20, 24, 55, 185, 273, 294
Fnu4HI	GCNGC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	2 cut(s)	125, 179
GluI	GCNGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	4 cut(s)	71, 201, 310, 342
Hin1II	CATG	6 cut(s)	24, 28, 59, 189, 277, 298
HinfI	GANTC	2 cut(s)	197, 335
HpaII	CCGG	4 cut(s)	71, 201, 310, 342
HphI	GGTGA	2 cut(s)	60, 94
Hpy188I	TCNGA	2 cut(s)	196, 233
Hpy188III	TCNNGA	1 cut(s)	385
HpyAV	CCTTC	2 cut(s)	68, 296
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	5 cut(s)	24, 59, 170, 189, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	6 cut(s)	24, 28, 59, 189, 277, 298
Lsp1109I	GCAGC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	125, 179
MboII	GAAGA	1 cut(s)	388
MluCI	AATT	3 cut(s)	61, 117, 281
MlyI	GAGTC	2 cut(s)	191, 329
MnlI	CCTC	4 cut(s)	78, 141, 247, 362
Mph1103I	ATGCAT	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	2 cut(s)	11, 212
MslI	CAYNNNNRTG	2 cut(s)	23, 29
MspCI	CTTAAG	1 cut(s)	211
MspI	CCGG	4 cut(s)	71, 201, 310, 342
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	215
NlaIII	CATG	6 cut(s)	24, 28, 59, 189, 277, 298
NsiI	ATGCAT	1 cut(s)	26
NspI	RCATGY	3 cut(s)	24, 59, 189
PdmI	GAANNNNTTC	1 cut(s)	402
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	2 cut(s)	191, 329
PpsI	GAGTC	2 cut(s)	191, 329
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
RseI	CAYNNNNRTG	2 cut(s)	23, 29
SaqAI	TTAA	2 cut(s)	11, 212
SatI	GCNGC	1 cut(s)	190
SchI	GAGTC	2 cut(s)	191, 329
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	7 cut(s)	79, 93, 126, 152, 194, 307, 354
SmiMI	CAYNNNNRTG	2 cut(s)	23, 29
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	61, 117, 281
SspMI	CTAG	2 cut(s)	125, 179
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	252, 384
TasI	AATT	3 cut(s)	61, 117, 281
Tru1I	TTAA	2 cut(s)	11, 212
Tru9I	TTAA	2 cut(s)	11, 212
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	189
TspDTI	ATGAA	2 cut(s)	47, 251
TspRI	CASTG	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	3 cut(s)	24, 59, 189
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	2 cut(s)	125, 179
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.