Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017729

Physical Location & Seq

Genomic Coordinates Reverse (-)

22191912 .. 22192229

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG231300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCAACCAAGAGTGATGGAATTGAACTTGCAGGAGAGAGTGCACTGGAGAGGTATGATTCTGGTGCATATGGACAAGTTTTGGCCATAAGCAGATCAGATTCCGGGAATGCTTTGAGTGCTTTCACATACCTAAGATTGAATAAACGATTGTTCGAAGGGGACAACTGGCGGAACATGGTTGAATTTGTGAAAGGCATGGCTGAAGGTGCCCGGAATAAAAGACTGTTAGAGTGTGACTCCACTGGAACCGACCTTTTTGTCGGGTTTATCAAGGAGAAGAATGTCCAGGAAGAAAAGGAAACCGTTCTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

5.01

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 63	2.8e-18	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017729)

Species	Orthologous Gene IDs
malus_domestica	MD06G1044200.v1.1
pyrus_communis	pycom06g03730
rosa_chinensis	RchiOBHm_Chr0c22g0500661 RchiOBHm_Chr7g0206591 RchiOBHm_Chr7g0207331 RchiOBHm_Chr7g0207681
rosa_multiflora	Rmu_co8257627.1_g000001 Rmu_sc0004987.1_g000004
rosa_rugosa	Rorug06G0115900
rosa_samantha	Rh7AG231300 Rh7AG232300 Rh7CG245000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	209
AciI	CCGC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	26, 142, 185
AjnI	CCWGG	1 cut(s)	288
Alw21I	GWGCWC	1 cut(s)	46
Alw44I	GTGCAC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	84
ApaLI	GTGCAC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	306
AsuC2I	CCSGG	2 cut(s)	106, 214
AsuII	TTCGAA	1 cut(s)	156
BaeGI	GKGCMC	2 cut(s)	46, 214
BalI	TGGCCA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	46
BccI	CCATC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	2 cut(s)	106, 214
Bme1390I	CCNGG	3 cut(s)	106, 214, 290
BmiI	GGNNCC	2 cut(s)	211, 250
BmrFI	CCNGG	3 cut(s)	106, 214, 290
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	156
BpuMI	CCSGG	2 cut(s)	106, 214
Bse1I	ACTGG	3 cut(s)	51, 173, 250
BseBI	CCWGG	1 cut(s)	290
BseNI	ACTGG	3 cut(s)	51, 173, 250
BseSI	GKGCMC	2 cut(s)	46, 214
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	105, 214
BslFI	GGGAC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	46, 214
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	211, 250
BspT104I	TTCGAA	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	209
BsrI	ACTGG	3 cut(s)	51, 173, 250
BssMI	GATC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	228, 307
BstBI	TTCGAA	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 209
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	104, 212, 288
BstSLI	GKGCMC	2 cut(s)	46, 214
BsuRI	GGCC	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	44, 243
CviAII	CATG	2 cut(s)	178, 199
CviJI	RGCY	2 cut(s)	86, 203
CviKI_1	RGCY	2 cut(s)	86, 203
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	181, 202
FaiI	YATR	7 cut(s)	57, 70, 72, 89, 130, 179, 200
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	177, 198
FauNDI	CATATG	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	2 cut(s)	105, 214
Hin1II	CATG	2 cut(s)	181, 202
HinfI	GANTC	3 cut(s)	59, 101, 239
HpaII	CCGG	2 cut(s)	105, 214
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	152, 200
HpyCH4III	ACNGT	2 cut(s)	228, 307
HpyCH4V	TGCA	3 cut(s)	32, 44, 68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 209
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	181, 202
Kzo9I	GATC	1 cut(s)	95
LpnPI	CCDG	9 cut(s)	18, 32, 48, 118, 154, 227, 231, 275, 302
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MboII	GAAGA	2 cut(s)	292, 305
MhlI	GDGCHC	2 cut(s)	46, 214
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	2 cut(s)	21, 185
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	1 cut(s)	45
Mox20I	TGGCCA	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	86
MspI	CCGG	2 cut(s)	105, 214
MspR9I	CCNGG	3 cut(s)	106, 214, 290
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	119, 209
NciI	CCSGG	2 cut(s)	106, 214
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	181, 202
NlaIV	GGNNCC	2 cut(s)	211, 250
NmuCI	GTSAC	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	156
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	59, 101
PfoI	TCCNGGA	2 cut(s)	104, 288
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	211, 250
Sau3AI	GATC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	3 cut(s)	106, 214, 290
SduI	GDGCHC	2 cut(s)	46, 214
SetI	ASST	4 cut(s)	56, 135, 211, 258
SfuI	TTCGAA	1 cut(s)	156
Sse9I	AATT	2 cut(s)	21, 185
SsiI	CCGC	1 cut(s)	172
StyD4I	CCNGG	3 cut(s)	104, 212, 288
TaaI	ACNGT	2 cut(s)	228, 307
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	21, 185
TfiI	GAWTC	2 cut(s)	59, 101
TscAI	CASTG	2 cut(s)	51, 250
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspRI	CASTG	2 cut(s)	51, 250
VneI	GTGCAC	1 cut(s)	42
XapI	RAATTY	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.