Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0017729

Physical Location & Seq

Genomic Coordinates Reverse (-)

22925602 .. 22925991

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG245000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAAATGAAAGATGGAGAACAGCCTGACAATGCAAATTGCTCACCTGAGGGGTTAGTCCGGCAAGTAAAGATGGCAACCAAGAGTGCTGGAATTGAACTTGCAGGAGAGAGTGCACTGGAGAGGTATGATTCTGGTGCATACGGACAAGTTTTGGCCACAAGCAGATCAGATTCCGGGAATGCGTTGAGTGCTTTCACATACCTAAGATTGAATAAACGATTGTTCGAAGGGGACAACTGGCGGAACATGGTTGAATTTGTGAAAGGCATGGCTGAAGGTGCCCGGAATAAAAGACTGTTAGAGCGTGACTCCACTGGAACCGACCTTTTTGTCGGGTTTATCAAGGAGAAGAATGTCCAGGAAGAAAAGGAAACTGTTCTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

129

Amino Acids

14.31

Weight (kDa)

5.12

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 87	1.1e-31	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017729)

Species	Orthologous Gene IDs
malus_domestica	MD06G1044200.v1.1
pyrus_communis	pycom06g03730
rosa_chinensis	RchiOBHm_Chr0c22g0500661 RchiOBHm_Chr7g0206591 RchiOBHm_Chr7g0207331 RchiOBHm_Chr7g0207681
rosa_multiflora	Rmu_co8257627.1_g000001 Rmu_sc0004987.1_g000004
rosa_rugosa	Rorug06G0115900
rosa_samantha	Rh7AG231300 Rh7AG232300 Rh7CG245000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	281
AciI	CCGC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	297
AgsI	TTSAA	3 cut(s)	98, 214, 257
AjnI	CCWGG	1 cut(s)	360
Alw21I	GWGCWC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	156
ApaLI	GTGCAC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	378
AsuC2I	CCSGG	2 cut(s)	178, 286
AsuHPI	GGTGA	1 cut(s)	36
AsuII	TTCGAA	1 cut(s)	228
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	2 cut(s)	118, 286
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	2 cut(s)	8, 67
BciT130I	CCWGG	1 cut(s)	362
BcnI	CCSGG	2 cut(s)	178, 286
Bme1390I	CCNGG	3 cut(s)	178, 286, 362
BmiI	GGNNCC	2 cut(s)	283, 322
BmrFI	CCNGG	3 cut(s)	178, 286, 362
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	228
BpuMI	CCSGG	2 cut(s)	178, 286
Bse1I	ACTGG	3 cut(s)	123, 245, 322
Bse21I	CCTNAGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	123, 245, 322
BseSI	GKGCMC	2 cut(s)	118, 286
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	61, 177, 286
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	118, 286
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	283, 322
BspT104I	TTCGAA	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	123, 245, 322
BssMI	GATC	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	300, 379
BstBI	TTCGAA	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	48, 206
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 281
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	3 cut(s)	176, 284, 360
BstSLI	GKGCMC	2 cut(s)	118, 286
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	116, 315
CviAII	CATG	2 cut(s)	250, 271
CviJI	RGCY	3 cut(s)	25, 158, 275
CviKI_1	RGCY	3 cut(s)	25, 158, 275
DdeI	CTNAG	2 cut(s)	48, 206
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	360
FaeI	CATG	2 cut(s)	253, 274
FaiI	YATR	5 cut(s)	129, 142, 202, 251, 272
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	249, 270
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	3 cut(s)	61, 177, 286
Hin1II	CATG	2 cut(s)	253, 274
HinfI	GANTC	3 cut(s)	131, 173, 311
HpaII	CCGG	3 cut(s)	61, 177, 286
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	224, 272
HpyCH4III	ACNGT	2 cut(s)	300, 379
HpyCH4V	TGCA	4 cut(s)	35, 104, 116, 140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 281
HpyF3I	CTNAG	2 cut(s)	48, 206
Hsp92II	CATG	2 cut(s)	253, 274
Kzo9I	GATC	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	2 cut(s)	364, 377
MhlI	GDGCHC	2 cut(s)	118, 286
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	3 cut(s)	37, 93, 257
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	2 cut(s)	43, 117
Mox20I	TGGCCA	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	3 cut(s)	61, 177, 286
MspR9I	CCNGG	3 cut(s)	178, 286, 362
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	191, 281
NciI	CCSGG	2 cut(s)	178, 286
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	253, 274
NlaIV	GGNNCC	2 cut(s)	283, 322
NmuCI	GTSAC	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	228
PctI	GAATGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	131, 173
PfoI	TCCNGGA	2 cut(s)	176, 360
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	283, 322
Sau3AI	GATC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	178, 286, 362
SduI	GDGCHC	2 cut(s)	118, 286
SetI	ASST	5 cut(s)	49, 128, 207, 283, 330
SfuI	TTCGAA	1 cut(s)	228
Sse9I	AATT	3 cut(s)	37, 93, 257
SsiI	CCGC	1 cut(s)	244
StyD4I	CCNGG	3 cut(s)	176, 284, 360
TaaI	ACNGT	2 cut(s)	300, 379
TaqI	TCGA	1 cut(s)	228
TasI	AATT	3 cut(s)	37, 93, 257
TfiI	GAWTC	2 cut(s)	131, 173
TscAI	CASTG	2 cut(s)	123, 322
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	123, 322
VneI	GTGCAC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.