Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0017729

Physical Location & Seq

Genomic Coordinates Forward (+)

4692803 .. 4693231

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTCAGCAAAAACAGGGTTGTATTAAACTTCACCTGCATGGAAATGAAAGATAGAGAACAGCCTGAACACGCAAATTGCTCACCAGAAGGTCTGGTGAGGCAGGTAAAGATGGCGACCAAGAGTGCTGGAATTGACCTAGCAGGAGAAAATGCCCTGGAGAGGTATGACACTGGTGCGTTTGCACATGTTTTAGCAACAAGCAGATCAGATTCCGGCAATTCACTAAGTGCATTTACATATCTCCGAATGAACAAGAGATTGTTCGAGGGGGATAACTGGAGGAACATGGTTGAATTTGTGAGAAGCATGGCAGAAGGTGGCCGGAACAGAAGTCTTTCAGAGTGCGACTCTACCGGAAGCGACCTCTTTGTTCGTTTTATCAAAGAGAAGAAAGTCGAGAAAACCAAGGAAACTGTTCTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

143

Amino Acids

16.05

Weight (kDa)

8.47

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 100	2.5e-39	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017729)

Species	Orthologous Gene IDs
malus_domestica	MD06G1044200.v1.1
pyrus_communis	pycom06g03730
rosa_chinensis	RchiOBHm_Chr0c22g0500661 RchiOBHm_Chr7g0206591 RchiOBHm_Chr7g0207331 RchiOBHm_Chr7g0207681
rosa_multiflora	Rmu_co8257627.1_g000001 Rmu_sc0004987.1_g000004
rosa_rugosa	Rorug06G0115900
rosa_samantha	Rh7AG231300 Rh7AG232300 Rh7CG245000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	2 cut(s)	44, 94
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	296
AdeI	CACNNNGTG	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	156
AoxI	GGCC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	2 cut(s)	337, 417
AsuHPI	GGTGA	3 cut(s)	25, 75, 109
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	140
BfuAI	ACCTGC	2 cut(s)	44, 94
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	2 cut(s)	179, 301
BsaJI	CCNNGG	2 cut(s)	156, 408
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	178, 284
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	156, 408
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	178, 284
BshFI	GGCC	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	216, 325, 357
BslI	CCNNNNNNNGG	1 cut(s)	162
BsnI	GGCC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	324
BspMI	ACCTGC	2 cut(s)	44, 94
BsrI	ACTGG	2 cut(s)	178, 284
BssECI	CCNNGG	2 cut(s)	156, 408
BssMI	GATC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	2 cut(s)	44, 94
CviAII	CATG	4 cut(s)	40, 188, 289, 310
CviJI	RGCY	2 cut(s)	64, 324
CviKI_1	RGCY	2 cut(s)	64, 324
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
DraIII	CACNNNGTG	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	4 cut(s)	43, 191, 292, 313
FaiI	YATR	6 cut(s)	41, 168, 189, 241, 290, 311
FatI	CATG	4 cut(s)	39, 187, 288, 309
FspBI	CTAG	1 cut(s)	140
GsuI	CTGGAG	2 cut(s)	179, 301
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	3 cut(s)	216, 325, 357
Hin1II	CATG	4 cut(s)	43, 191, 292, 313
HinfI	GANTC	2 cut(s)	212, 350
HpaII	CCGG	3 cut(s)	216, 325, 357
HphI	GGTGA	3 cut(s)	25, 75, 109
Hpy188I	TCNGA	3 cut(s)	211, 248, 343
Hpy188III	TCNNGA	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	83, 311
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	3 cut(s)	39, 185, 233
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	4 cut(s)	43, 191, 292, 313
Kzo9I	GATC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	140
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	1 cut(s)	403
MluCI	AATT	4 cut(s)	76, 132, 220, 296
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	93, 156, 262, 276, 377
MroXI	GAANNNNTTC	2 cut(s)	337, 417
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	2 cut(s)	38, 44
MspI	CCGG	3 cut(s)	216, 325, 357
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	4 cut(s)	43, 191, 292, 313
NspI	RCATGY	1 cut(s)	191
PaqCI	CACCTGC	1 cut(s)	44
PciI	ACATGT	1 cut(s)	187
PdmI	GAANNNNTTC	2 cut(s)	337, 417
PfeI	GAWTC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PscI	ACATGT	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
RseI	CAYNNNNRTG	2 cut(s)	38, 44
SaqAI	TTAA	1 cut(s)	26
Sau3AI	GATC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	7 cut(s)	38, 94, 108, 141, 167, 322, 369
SmiMI	CAYNNNNRTG	2 cut(s)	38, 44
Sse9I	AATT	4 cut(s)	76, 132, 220, 296
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	267, 399
TasI	AATT	4 cut(s)	76, 132, 220, 296
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	62, 266
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	191
XmnI	GAANNNNTTC	2 cut(s)	337, 417
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.