Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0017729

Physical Location & Seq

Genomic Coordinates Reverse (-)

15746621 .. 15746968

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0115900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAACCAAAAACCCAGCAACCAACCGAGGATGGAGGAAGTAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTTTAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCCAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCGATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

115

Amino Acids

13.48

Weight (kDa)

10.01

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	1.2e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017729)

Species	Orthologous Gene IDs
malus_domestica	MD06G1044200.v1.1
pyrus_communis	pycom06g03730
rosa_chinensis	RchiOBHm_Chr0c22g0500661 RchiOBHm_Chr7g0206591 RchiOBHm_Chr7g0207331 RchiOBHm_Chr7g0207681
rosa_multiflora	Rmu_co8257627.1_g000001 Rmu_sc0004987.1_g000004
rosa_rugosa	Rorug06G0115900
rosa_samantha	Rh7AG231300 Rh7AG232300 Rh7CG245000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	335
AciI	CCGC	2 cut(s)	82, 265
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	205
AfaI	GTAC	2 cut(s)	203, 337
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	2 cut(s)	130, 193
AluI	AGCT	2 cut(s)	130, 193
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	50
Asp718I	GGTACC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	2 cut(s)	153, 276
BaeI	ACNNNNGTAYC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	3 cut(s)	6, 155, 337
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	106, 180, 210, 308
BspACI	CCGC	2 cut(s)	82, 265
BspANI	GGCC	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	6, 155, 337
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	4 cut(s)	106, 180, 210, 308
Bst6I	CTCTTC	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	4 cut(s)	109, 183, 213, 311
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	106, 180, 210, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	37, 292
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	2 cut(s)	202, 336
CviAII	CATG	2 cut(s)	70, 293
CviJI	RGCY	6 cut(s)	53, 130, 193, 207, 254, 316
CviKI_1	RGCY	6 cut(s)	53, 130, 193, 207, 254, 316
CviQI	GTAC	2 cut(s)	202, 336
DpnI	GATC	4 cut(s)	108, 182, 212, 310
DpnII	GATC	4 cut(s)	106, 180, 210, 308
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	153, 276
Eco88I	CYCGRG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	2 cut(s)	73, 296
FaiI	YATR	2 cut(s)	71, 294
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	2 cut(s)	69, 292
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	2 cut(s)	73, 296
HinfI	GANTC	3 cut(s)	94, 117, 172
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	244, 279
Hpy188I	TCNGA	3 cut(s)	111, 177, 286
Hpy188III	TCNNGA	3 cut(s)	220, 241, 257
Hpy8I	GTNNAC	2 cut(s)	244, 279
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	73, 296
KpnI	GGTACC	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	106, 180, 210, 308
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	29, 67, 73, 203, 221, 297
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	4 cut(s)	108, 182, 212, 310
MboI	GATC	4 cut(s)	106, 180, 210, 308
MboII	GAAGA	2 cut(s)	280, 283
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	1 cut(s)	340
MnlI	CCTC	5 cut(s)	22, 29, 131, 171, 267
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	4 cut(s)	106, 180, 210, 308
NlaIII	CATG	2 cut(s)	73, 296
NlaIV	GGNNCC	3 cut(s)	6, 155, 337
NspI	RCATGY	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	3 cut(s)	94, 117, 172
PkrI	GCNGC	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 337
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	203, 337
RsaNI	GTAC	2 cut(s)	202, 336
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	4 cut(s)	106, 180, 210, 308
Sau96I	GGNCC	2 cut(s)	153, 276
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	6 cut(s)	92, 132, 155, 195, 228, 278
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	2 cut(s)	153, 276
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	82, 265
StyD4I	CCNGG	1 cut(s)	53
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TfiI	GAWTC	3 cut(s)	94, 117, 172
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.