Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257627.1

Orthogroup ID

OG0017729

Physical Location & Seq

Genomic Coordinates Reverse (-)

376 .. 765

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257627.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggaaatgaaagatggagaacagcctgacaatgcaaattgctcgcctgaggggttagttcggcaagtaaagatggcaaccaagagtgctggaattgaacttgcaggagagaatgcactggagaggtatgattctggtgcatatggacaagttttggccacaagcagatcagattctggcaatgcgttgagtgcattcacatacctaagattgaataagagattgtttgaaggggacaactggcggaacatggttgaatttgtgaaaggcatggctgaaggtggccggaatgaaagactgtcagagtgtgactccaccggaaccgacctttttgtccgttttatcaaggagaagaatgtccaggaagaaaaggaaactgttcttgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

129

Amino Acids

14.35

Weight (kDa)

4.88

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017729)

Species	Orthologous Gene IDs
malus_domestica	MD06G1044200.v1.1
pyrus_communis	pycom06g03730
rosa_chinensis	RchiOBHm_Chr0c22g0500661 RchiOBHm_Chr7g0206591 RchiOBHm_Chr7g0207331 RchiOBHm_Chr7g0207681
rosa_multiflora	Rmu_co8257627.1_g000001 Rmu_sc0004987.1_g000004
rosa_rugosa	Rorug06G0115900
rosa_samantha	Rh7AG231300 Rh7AG232300 Rh7CG245000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AciI	CCGC	1 cut(s)	244
AcoI	YGGCCR	2 cut(s)	156, 283
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	98, 214, 230, 257
AjnI	CCWGG	1 cut(s)	360
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	156, 283
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	378
AxyI	CCTNAGG	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	158
BccI	CCATC	2 cut(s)	8, 67
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	1 cut(s)	140
BsaWI	WCCGGW	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	123, 245
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	123, 245
BshFI	GGCC	2 cut(s)	158, 285
BsiSI	CCGG	2 cut(s)	286, 318
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	2 cut(s)	118, 194
BsnI	GGCC	2 cut(s)	158, 285
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	2 cut(s)	158, 285
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	123, 245
BssMI	GATC	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	300, 379
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	48, 206
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	158, 285
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	176
CviAII	CATG	2 cut(s)	250, 271
CviJI	RGCY	4 cut(s)	25, 158, 275, 285
CviKI_1	RGCY	4 cut(s)	25, 158, 275, 285
DdeI	CTNAG	2 cut(s)	48, 206
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	2 cut(s)	156, 283
EciI	GGCGGA	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	360
FaeI	CATG	2 cut(s)	253, 274
FaiI	YATR	6 cut(s)	129, 142, 144, 202, 251, 272
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	249, 270
FauNDI	CATATG	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	158, 285
HapII	CCGG	2 cut(s)	286, 318
Hin1II	CATG	2 cut(s)	253, 274
HinfI	GANTC	3 cut(s)	131, 173, 311
HpaII	CCGG	2 cut(s)	286, 318
Hpy188I	TCNGA	2 cut(s)	172, 304
HpyAV	CCTTC	2 cut(s)	224, 272
HpyCH4III	ACNGT	2 cut(s)	300, 379
HpyCH4V	TGCA	5 cut(s)	35, 104, 116, 140, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	48, 206
Hsp92II	CATG	2 cut(s)	253, 274
Kzo9I	GATC	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	2 cut(s)	364, 377
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	3 cut(s)	37, 93, 257
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	2 cut(s)	43, 117
Mox20I	TGGCCA	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	2 cut(s)	286, 318
MspR9I	CCNGG	1 cut(s)	362
Mva1269I	GAATGC	2 cut(s)	118, 194
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	253, 274
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	308
PctI	GAATGC	2 cut(s)	118, 194
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	131, 173
PfoI	TCCNGGA	1 cut(s)	360
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	4 cut(s)	128, 207, 283, 330
Sse9I	AATT	3 cut(s)	37, 93, 257
SsiI	CCGC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	2 cut(s)	300, 379
TasI	AATT	3 cut(s)	37, 93, 257
TfiI	GAWTC	2 cut(s)	131, 173
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	23, 306
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.