Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004987.1

Orthogroup ID

OG0017729

Physical Location & Seq

Genomic Coordinates Forward (+)

35261 .. 35689

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004987.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgttcagcaaacatggggttgtattaaacttcacctgcatggaaatgaaagatggagaacagcctgacaatgcaaattgctctcctgaggggttagtccggcaagtaaagatggcaaccaagagtgcaggaattgaacatgcaggagagaatgcactggagaggtatgattctggtgcatatggacagagattgtttgaaggggacaactggcggaacatggttgaatttgtgaaaggcatggctgaaggtggccggaatgaaagactgtcagagtgcgactccactggcaccgacctttttgtccattttatcaaagagaagaatgtccaggaagaaaaggaaactgttcttgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

4.96

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017729)

Species	Orthologous Gene IDs
malus_domestica	MD06G1044200.v1.1
pyrus_communis	pycom06g03730
rosa_chinensis	RchiOBHm_Chr0c22g0500661 RchiOBHm_Chr7g0206591 RchiOBHm_Chr7g0207331 RchiOBHm_Chr7g0207681
rosa_multiflora	Rmu_co8257627.1_g000001 Rmu_sc0004987.1_g000004
rosa_rugosa	Rorug06G0115900
rosa_samantha	Rh7AG231300 Rh7AG232300 Rh7CG245000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
AasI	GACNNNNNNGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	290
AciI	CCGC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	267
AgsI	TTSAA	3 cut(s)	137, 200, 227
AjnI	CCWGG	1 cut(s)	330
AoxI	GGCC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	290
BccI	CCATC	2 cut(s)	47, 106
BciT130I	CCWGG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	1 cut(s)	179
Bse1I	ACTGG	3 cut(s)	162, 215, 292
Bse21I	CCTNAGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	3 cut(s)	162, 215, 292
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	100, 256
BslFI	GGGAC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	290
BsrI	ACTGG	3 cut(s)	162, 215, 292
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	270, 349
BstDEI	CTNAG	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	330
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	155, 285
BveI	ACCTGC	1 cut(s)	44
CviAII	CATG	5 cut(s)	14, 40, 140, 220, 241
CviJI	RGCY	3 cut(s)	64, 245, 255
CviKI_1	RGCY	3 cut(s)	64, 245, 255
DdeI	CTNAG	1 cut(s)	87
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	267
Eco81I	CCTNAGG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	5 cut(s)	17, 43, 143, 223, 244
FaiI	YATR	8 cut(s)	15, 41, 141, 168, 181, 183, 221, 242
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	5 cut(s)	13, 39, 139, 219, 240
FauNDI	CATATG	1 cut(s)	181
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	2 cut(s)	100, 256
Hin1II	CATG	5 cut(s)	17, 43, 143, 223, 244
HinfI	GANTC	2 cut(s)	170, 281
HpaII	CCGG	2 cut(s)	100, 256
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	194, 242
HpyCH4III	ACNGT	2 cut(s)	270, 349
HpyCH4V	TGCA	6 cut(s)	39, 74, 128, 143, 155, 179
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	5 cut(s)	17, 43, 143, 223, 244
MboII	GAAGA	2 cut(s)	334, 347
MluCI	AATT	3 cut(s)	76, 132, 227
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	2 cut(s)	82, 156
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	2 cut(s)	38, 44
MspI	CCGG	2 cut(s)	100, 256
MspR9I	CCNGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	332
NdeI	CATATG	1 cut(s)	181
NlaIII	CATG	5 cut(s)	17, 43, 143, 223, 244
NlaIV	GGNNCC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	143
PaqCI	CACCTGC	1 cut(s)	44
PctI	GAATGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	330
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	292
RseI	CAYNNNNRTG	2 cut(s)	38, 44
SaqAI	TTAA	1 cut(s)	26
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	4 cut(s)	38, 167, 253, 300
SmiMI	CAYNNNNRTG	2 cut(s)	38, 44
Sse9I	AATT	3 cut(s)	76, 132, 227
SsiI	CCGC	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	270, 349
TasI	AATT	3 cut(s)	76, 132, 227
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	2 cut(s)	162, 292
TspDTI	ATGAA	2 cut(s)	62, 276
TspRI	CASTG	2 cut(s)	162, 292
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.