Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0016648

Physical Location & Seq

Genomic Coordinates Reverse (-)

26887764 .. 26889256

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1127000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGCTTTTTCGCATCGCTGCAATCTTCTTTCCTTGCCTTGTTTTTGGCTAGAAACCCAAGTTCATGGAGACTGGAGTGGAACGTGCAGCTTTTGACCATCGGAGTTCTGACCACAGCATTAGTCTATTACTTGCAAGCATGGTGCATTAGTCACAAGGGACCAGTTTCTGCAGCTATGTTCACTCCACTTCCAGTCGTCATAGTGGCAGTGTTTTCGGCAATTGCTTTCACAGAGCAGCTTCACCTTGGCAGCTTGATTGGAGCACTTCTCATTATTGTGGGACTTTACTGTGTGCTGTGGGGAAAGAGGAAAGACGGTCTTGTTGCCGAACACACAGAGATTGAAAAAGTGACAGTCGACGATAATAAAGTGGTTGAGATTTACATGAATGAAATTTCGCAGTCAATCCTGTTTCTAACGGAGAAACATGATCATGGAGACATGCTTTTTTTTTTTCGCGGTCAGATCTTAACGAACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

162

Amino Acids

18.12

Weight (kDa)

6.17

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	2 - 100	3.4e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30420 AT4G30420
malus_domestica	MD06G1126500.v1.1 MD06G1127000.v1.1 MD13G1273600.v1.1
prunus_persica	Prupe.1G098100_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565400_v2.0.a1 Prupe.6G309000_v2.0.a1 Prupe.6G309000_v2.0.a1
pyrus_communis	pycom06g11690
rosa_multiflora	Rmu_sc0001800.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	462
AciI	CCGC	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	347
AluBI	AGCT	4 cut(s)	91, 176, 241, 255
AluI	AGCT	4 cut(s)	91, 176, 241, 255
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	64, 435
AlwNI	CAGNNNCTG	1 cut(s)	170
ApeKI	GCWGC	5 cut(s)	19, 88, 173, 238, 252
ApoI	RAATTY	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	5 cut(s)	6, 100, 185, 250, 264
BccI	CCATC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	64, 435
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	171
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	5 cut(s)	20, 89, 174, 239, 253
BlsI	GCNGC	5 cut(s)	21, 90, 175, 240, 254
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
BpmI	CTGGAG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	247
Bse1I	ACTGG	3 cut(s)	78, 164, 194
BseDI	CCNNGG	1 cut(s)	247
BseNI	ACTGG	3 cut(s)	78, 164, 194
BseXI	GCAGC	5 cut(s)	6, 100, 185, 250, 264
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	268
BslFI	GGGAC	2 cut(s)	174, 297
BsmAI	GTCTC	2 cut(s)	64, 435
BsmFI	GGGAC	2 cut(s)	174, 297
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	433, 468
BspACI	CCGC	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	78, 164, 194
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	433, 468
BssT1I	CCWWGG	1 cut(s)	247
Bst4CI	ACNGT	4 cut(s)	293, 320, 358, 482
BstC8I	GCNNGC	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	2 cut(s)	436, 471
BstMAI	GTCTC	2 cut(s)	64, 435
BstMBI	GATC	2 cut(s)	433, 468
BstNSI	RCATGY	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	5 cut(s)	6, 100, 185, 250, 264
BstX2I	RGATCY	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	161
CviAII	CATG	6 cut(s)	66, 141, 388, 431, 437, 445
CviJI	RGCY	5 cut(s)	50, 91, 176, 241, 255
CviKI_1	RGCY	5 cut(s)	50, 91, 176, 241, 255
DpnI	GATC	2 cut(s)	435, 470
DpnII	GATC	2 cut(s)	433, 468
Eco130I	CCWWGG	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	6 cut(s)	69, 144, 391, 434, 440, 448
FaiI	YATR	8 cut(s)	67, 142, 179, 203, 389, 432, 438, 446
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	2 cut(s)	174, 297
FatI	CATG	6 cut(s)	65, 140, 387, 430, 436, 444
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	20, 89, 174, 239, 253
Fsp4HI	GCNGC	5 cut(s)	20, 89, 174, 239, 253
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	5 cut(s)	20, 89, 174, 239, 253
GsuI	CTGGAG	1 cut(s)	95
Hin1II	CATG	6 cut(s)	69, 144, 391, 434, 440, 448
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	183, 361
Hpy188I	TCNGA	3 cut(s)	104, 111, 468
Hpy8I	GTNNAC	2 cut(s)	183, 361
Hpy99I	CGWCG	1 cut(s)	365
HpyCH4III	ACNGT	4 cut(s)	293, 320, 358, 482
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	5 cut(s)	22, 88, 136, 147, 173
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	6 cut(s)	69, 144, 391, 434, 440, 448
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	433, 468
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	4 cut(s)	59, 177, 207, 425
Lsp1109I	GCAGC	5 cut(s)	6, 100, 185, 250, 264
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	152, 352
MalI	GATC	2 cut(s)	435, 470
MboI	GATC	2 cut(s)	433, 468
MboII	GAAGA	1 cut(s)	18
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	2 cut(s)	222, 396
MnlI	CCTC	1 cut(s)	303
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	2 cut(s)	278, 435
MunI	CAATTG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	462
NdeII	GATC	2 cut(s)	433, 468
NlaIII	CATG	6 cut(s)	69, 144, 391, 434, 440, 448
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	152, 352
NspI	RCATGY	1 cut(s)	448
PkrI	GCNGC	5 cut(s)	21, 90, 175, 240, 254
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	468
RseI	CAYNNNNRTG	2 cut(s)	278, 435
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	5 cut(s)	20, 89, 174, 239, 253
Sau3AI	GATC	2 cut(s)	433, 468
Sau96I	GGNCC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	6 cut(s)	87, 93, 178, 243, 249, 257
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	2 cut(s)	278, 435
Sse9I	AATT	2 cut(s)	222, 396
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	4 cut(s)	293, 320, 358, 482
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	360
TasI	AATT	2 cut(s)	222, 396
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	2 cut(s)	152, 352
TseI	GCWGC	5 cut(s)	19, 88, 173, 238, 252
Tsp45I	GTSAC	2 cut(s)	152, 352
TspDTI	ATGAA	3 cut(s)	54, 404, 408
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.