Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001800.1

Orthogroup ID

OG0016648

Physical Location & Seq

Genomic Coordinates Reverse (-)

107664 .. 108653

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001800.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgagcttcataggggcagcacagtcagctgtgttcaccgtgtgtattgaacatagacgagctgcttggaccgttggattcaacattgacctctggtccattctgtacgccggagtggtgtgctctggtctagtaatcttcattcaactatggtgcacagaagaaaaaggaccagtctttgtaaccatgttcaatcctgtttcaacaatcttggtggcaattctagcatactttgtgctcggtgaaagactttacatcggcagcatattaggggcagctattgtcattgttggcctatacttgctgttgtgggggaaagaaggtgatgaagtttacatcattaagtctgaagactcatctgatcagacatacgaagagaaagatgacagaatacgaacaatcacttcagtcaagaaggatccattacatggtgaaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

146

Amino Acids

16.22

Weight (kDa)

4.81

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30420 AT4G30420
malus_domestica	MD06G1126500.v1.1 MD06G1127000.v1.1 MD13G1273600.v1.1
prunus_persica	Prupe.1G098100_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565400_v2.0.a1 Prupe.6G309000_v2.0.a1 Prupe.6G309000_v2.0.a1
pyrus_communis	pycom06g11690
rosa_multiflora	Rmu_sc0001800.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	428
AclWI	GGATC	2 cut(s)	413, 426
AcuI	CTGAAG	2 cut(s)	369, 390
AdeI	CACNNNGTG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	5 cut(s)	50, 82, 146, 193, 204
AhdI	GACNNNNNGTC	1 cut(s)	94
AluBI	AGCT	4 cut(s)	6, 29, 62, 278
AluI	AGCT	4 cut(s)	6, 29, 62, 278
Alw21I	GWGCWC	3 cut(s)	125, 158, 240
Alw44I	GTGCAC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	413, 426
AoxI	GGCC	1 cut(s)	292
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	17, 62, 261, 275
AspS9I	GGNCC	3 cut(s)	69, 96, 170
AsuHPI	GGTGA	3 cut(s)	28, 254, 335
AvaII	GGWCC	3 cut(s)	69, 96, 170
BaeGI	GKGCMC	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	3 cut(s)	125, 158, 240
BbvI	GCAGC	4 cut(s)	29, 49, 273, 287
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	2 cut(s)	131, 224
BisI	GCNGC	4 cut(s)	18, 63, 262, 276
BlsI	GCNGC	4 cut(s)	19, 64, 263, 277
Bme18I	GGWCC	3 cut(s)	69, 96, 170
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmgT120I	GGNCC	3 cut(s)	69, 96, 170
BmiI	GGNNCC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	4 cut(s)	29, 49, 273, 287
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	3 cut(s)	125, 158, 240
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	428
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	3 cut(s)	125, 158, 240
Bsp143I	GATC	2 cut(s)	361, 418
BspANI	GGCC	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	413, 426
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	361, 418
Bst4CI	ACNGT	3 cut(s)	24, 40, 73
Bst6I	CTCTTC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	364, 421
BstMBI	GATC	2 cut(s)	361, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 224
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	4 cut(s)	29, 49, 273, 287
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	294
Cfr13I	GGNCC	3 cut(s)	69, 96, 170
Csp6I	GTAC	1 cut(s)	106
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	3 cut(s)	187, 428, 438
CviJI	RGCY	5 cut(s)	6, 29, 62, 278, 294
CviKI_1	RGCY	5 cut(s)	6, 29, 62, 278, 294
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	2 cut(s)	363, 420
DpnII	GATC	2 cut(s)	361, 418
DraIII	CACNNNGTG	1 cut(s)	42
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	369
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	369
Eco47I	GGWCC	3 cut(s)	69, 96, 170
Eco57I	CTGAAG	2 cut(s)	369, 390
FaeI	CATG	3 cut(s)	190, 431, 441
FatI	CATG	3 cut(s)	186, 427, 437
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	4 cut(s)	18, 63, 262, 276
Fsp4HI	GCNGC	4 cut(s)	18, 63, 262, 276
FspBI	CTAG	2 cut(s)	131, 224
GluI	GCNGC	4 cut(s)	18, 63, 262, 276
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	3 cut(s)	190, 431, 441
HinfI	GANTC	2 cut(s)	78, 353
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	3 cut(s)	28, 254, 335
Hpy166II	GTNNAC	4 cut(s)	36, 156, 334, 434
Hpy188I	TCNGA	3 cut(s)	349, 361, 366
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	4 cut(s)	36, 156, 334, 434
HpyAV	CCTTC	2 cut(s)	314, 409
HpyCH4III	ACNGT	3 cut(s)	24, 40, 73
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 224
Hsp92II	CATG	3 cut(s)	190, 431, 441
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	361, 418
LpnPI	CCDG	5 cut(s)	79, 111, 124, 186, 210
Lsp1109I	GCAGC	4 cut(s)	29, 49, 273, 287
MaeI	CTAG	2 cut(s)	131, 224
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	363, 420
MboI	GATC	2 cut(s)	361, 418
MboII	GAAGA	4 cut(s)	130, 173, 362, 386
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	3 cut(s)	125, 158, 240
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	1 cut(s)	101
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	26, 224
NdeII	GATC	2 cut(s)	361, 418
NlaIII	CATG	3 cut(s)	190, 431, 441
NlaIV	GGNNCC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	4 cut(s)	19, 64, 263, 277
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	3 cut(s)	69, 96, 170
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	18, 63, 262, 276
Sau3AI	GATC	2 cut(s)	361, 418
Sau96I	GGNCC	3 cut(s)	69, 96, 170
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	3 cut(s)	125, 158, 240
SetI	ASST	6 cut(s)	8, 31, 64, 93, 280, 325
SinI	GGWCC	3 cut(s)	69, 96, 170
Sse9I	AATT	1 cut(s)	219
SspMI	CTAG	2 cut(s)	131, 224
TaaI	ACNGT	3 cut(s)	24, 40, 73
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	4 cut(s)	17, 62, 261, 275
TspDTI	ATGAA	2 cut(s)	130, 342
Van91I	CCANNNNNTGG	1 cut(s)	428
VneI	GTGCAC	1 cut(s)	154
VpaK11BI	GGWCC	3 cut(s)	69, 96, 170
XspI	CTAG	2 cut(s)	131, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.