Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016648

Physical Location & Seq

Genomic Coordinates Reverse (-)

46158687 .. 46159832

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G565400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTGGTTCAGCAAACTGGAGTGGAACCTGCAACTTTCAACCATCGCCTACTGCGGAGTTGTAATCTCAGCATTAGCCTACTACCTGCAAACATGGTGCATCAGTTACAAGGGACCAGTCTTTGCAGCTATGTTTATTCCACTTCAAGTCATTATAGTGGCATTGTTCTTGGCAATTGCTTTCGCAGAGCGACTTCAGTTTGGCAGCTTGATCGGAGCGTTTCTCATTATCGTGGGCCTTTACTGTGTGCTGTGGGGAAAGAAGGAAAGACAATCTTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

95

Amino Acids

10.62

Weight (kDa)

8.68

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30420 AT4G30420
malus_domestica	MD06G1126500.v1.1 MD06G1127000.v1.1 MD13G1273600.v1.1
prunus_persica	Prupe.1G098100_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565400_v2.0.a1 Prupe.6G309000_v2.0.a1 Prupe.6G309000_v2.0.a1
pyrus_communis	pycom06g11690
rosa_multiflora	Rmu_sc0001800.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	36, 93
AciI	CCGC	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	39, 146
AluBI	AGCT	2 cut(s)	128, 207
AluI	AGCT	2 cut(s)	128, 207
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	125, 204
AspS9I	GGNCC	2 cut(s)	113, 235
AvaII	GGWCC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	137, 216
BccI	CCATC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BfuAI	ACCTGC	2 cut(s)	36, 93
BisI	GCNGC	2 cut(s)	126, 205
BlsI	GCNGC	2 cut(s)	127, 206
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 235
BmiI	GGNNCC	2 cut(s)	26, 114
BmsI	GCATC	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
BpmI	CTGGAG	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	21, 116
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	21, 116
BseXI	GCAGC	2 cut(s)	137, 216
BshFI	GGCC	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	26, 114
BspMI	ACCTGC	2 cut(s)	36, 93
BsrI	ACTGG	2 cut(s)	21, 116
BssMI	GATC	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	137, 216
BsuRI	GGCC	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	28
BveI	ACCTGC	2 cut(s)	36, 93
Cfr13I	GGNCC	2 cut(s)	113, 235
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	4 cut(s)	77, 128, 207, 237
CviKI_1	RGCY	4 cut(s)	77, 128, 207, 237
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	179
FaeI	CATG	1 cut(s)	96
FaiI	YATR	3 cut(s)	94, 131, 155
FalI	AAGNNNNNCTT	1 cut(s)	259
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	126, 205
Fsp4HI	GCNGC	2 cut(s)	126, 205
GluI	GCNGC	2 cut(s)	126, 205
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	31, 88, 99, 125
HpyF3I	CTNAG	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	4 cut(s)	2, 41, 98, 129
Lsp1109I	GCAGC	2 cut(s)	137, 216
LweI	GCATC	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MfeI	CAATTG	1 cut(s)	174
MluCI	AATT	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	155, 230
MunI	CAATTG	1 cut(s)	174
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	2 cut(s)	26, 114
PkrI	GCNGC	2 cut(s)	127, 206
PspN4I	GGNNCC	2 cut(s)	26, 114
PspPI	GGNCC	2 cut(s)	113, 235
RseI	CAYNNNNRTG	2 cut(s)	155, 230
SatI	GCNGC	2 cut(s)	126, 205
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	113, 235
SetI	ASST	4 cut(s)	30, 87, 130, 209
SfaNI	GCATC	1 cut(s)	108
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	155, 230
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	245
TasI	AATT	1 cut(s)	174
TseI	GCWGC	2 cut(s)	125, 204
VpaK11BI	GGWCC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.