Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016648

Physical Location & Seq

Genomic Coordinates Forward (+)

46147665 .. 46150501

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G565200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGGCATGTTAAGGAAAACTGGATCAAGGGGGCCCTTCTTATTCTGACGAGTCACATTGCGTGGAGTGCATGGCTAATCCTCCAGGCTGTGGTCTCCAAAGTCTACACTGCTCGATTATCGCTAACCACGATGATATGCTTTTTCGCATCGTTGCAATCTTCTTTTCTTGCTCTGTTTTTCGCAAGAAATCCAATTTCATGGAGACTGGAGTGGAACCTGCAACTTTTTACCATCGTCTACTGCGGAGTTGTAATCTCAGCATTAGCCTACTACCTGCAAAAATGGTGCCTCAGTTACAAGGGACCAGTCCTTGCAGCTATGTTTATTCCACTTCAAGTCATTATAGTGGCATTGTTCTCAGCAATTGCTTTCGCAGAGCGACTTCACTTTGGCAGTGGTGGTGTGCAGCTTGATCGGAGCGTTTCTCATTATCGTGGGCCTTTACTGTGTGCTGTGGGGAAAGAAGGAAAGACAATCTTGTTGCTGAACAGACAGAGAATGGAAAAGGGGTACTTGAAGACATTAAAGTGCTGGAGAATGATATTTCAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

186

Amino Acids

21.01

Weight (kDa)

9.9

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30420 AT4G30420
malus_domestica	MD06G1126500.v1.1 MD06G1127000.v1.1 MD13G1273600.v1.1
prunus_persica	Prupe.1G098100_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565400_v2.0.a1 Prupe.6G309000_v2.0.a1 Prupe.6G309000_v2.0.a1
pyrus_communis	pycom06g11690
rosa_multiflora	Rmu_sc0001800.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	228, 285
AccB1I	GGYRCC	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	2 cut(s)	105, 240
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	338, 520
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	2 cut(s)	320, 412
AluI	AGCT	2 cut(s)	320, 412
Alw26I	GTCTC	2 cut(s)	100, 199
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	2 cut(s)	33, 440
ApaI	GGGCCC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	317, 409
AspS9I	GGNCC	4 cut(s)	33, 34, 305, 440
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	527
BbvI	GCAGC	2 cut(s)	329, 421
BccI	CCATC	1 cut(s)	242
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	100, 199
BfuAI	ACCTGC	2 cut(s)	228, 285
BisI	GCNGC	2 cut(s)	318, 410
BlsI	GCNGC	2 cut(s)	319, 411
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	4 cut(s)	33, 34, 305, 440
BmiI	GGNNCC	5 cut(s)	34, 35, 218, 290, 306
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
BpmI	CTGGAG	3 cut(s)	68, 230, 556
BsaI	GGTCTC	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	3 cut(s)	26, 213, 308
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	3 cut(s)	273, 307, 375
BseNI	ACTGG	3 cut(s)	26, 213, 308
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	329, 421
BsgI	GTGCAG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	35, 442
BshNI	GGYRCC	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	100, 199
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	35, 442
Bso31I	GGTCTC	1 cut(s)	100
Bsp120I	GGGCCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	24, 415
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	2 cut(s)	35, 442
BspCNI	CTCAG	3 cut(s)	272, 306, 374
BspLI	GGNNCC	5 cut(s)	34, 35, 218, 290, 306
BspMI	ACCTGC	2 cut(s)	228, 285
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	3 cut(s)	26, 213, 308
BssMI	GATC	2 cut(s)	24, 415
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	259, 293, 361
BstKTI	GATC	2 cut(s)	27, 418
BstMAI	GTCTC	2 cut(s)	100, 199
BstMBI	GATC	2 cut(s)	24, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	329, 421
BstV2I	GAAGAC	1 cut(s)	527
BstXI	CCANNNNNNTGG	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	35, 442
BtsI	GCAGTG	2 cut(s)	108, 403
BtsIMutI	CAGTG	2 cut(s)	108, 403
BveI	ACCTGC	2 cut(s)	228, 285
Cfr13I	GGNCC	4 cut(s)	33, 34, 305, 440
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	3 cut(s)	8, 72, 201
CviJI	RGCY	7 cut(s)	35, 76, 89, 269, 320, 412, 442
CviKI_1	RGCY	7 cut(s)	35, 76, 89, 269, 320, 412, 442
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	3 cut(s)	259, 293, 361
DpnI	GATC	2 cut(s)	26, 417
DpnII	GATC	2 cut(s)	24, 415
Eco24I	GRGCYC	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	33, 34
EcoRII	CCWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	3 cut(s)	11, 75, 204
FaiI	YATR	7 cut(s)	9, 73, 139, 202, 323, 347, 556
FalI	AAGNNNNNCTT	4 cut(s)	464, 496, 500, 532
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	7, 71, 200
FblI	GTMKAC	2 cut(s)	105, 240
Fnu4HI	GCNGC	2 cut(s)	318, 410
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	318, 410
GluI	GCNGC	2 cut(s)	318, 410
GsuI	CTGGAG	3 cut(s)	68, 230, 556
HaeIII	GGCC	2 cut(s)	35, 442
Hin1II	CATG	3 cut(s)	11, 75, 204
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	106, 241
Hpy188I	TCNGA	2 cut(s)	48, 420
Hpy8I	GTNNAC	2 cut(s)	106, 241
HpyAV	CCTTC	2 cut(s)	47, 461
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4V	TGCA	6 cut(s)	71, 157, 223, 280, 317, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	259, 293, 361
Hsp92II	CATG	3 cut(s)	11, 75, 204
Kzo9I	GATC	2 cut(s)	24, 415
LmnI	GCTCC	1 cut(s)	420
LpnPI	CCDG	8 cut(s)	7, 71, 98, 194, 233, 290, 321, 520
Lsp1109I	GCAGC	2 cut(s)	329, 421
LweI	GCATC	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	53, 296
MalI	GATC	2 cut(s)	26, 417
MboI	GATC	2 cut(s)	24, 415
MboII	GAAGA	2 cut(s)	153, 532
MfeI	CAATTG	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	195, 366
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	2 cut(s)	92, 302
MseI	TTAA	2 cut(s)	12, 527
MslI	CAYNNNNRTG	3 cut(s)	347, 435, 529
MspR9I	CCNGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	2 cut(s)	24, 415
NlaIII	CATG	3 cut(s)	11, 75, 204
NlaIV	GGNNCC	5 cut(s)	34, 35, 218, 290, 306
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	319, 411
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	5 cut(s)	34, 35, 218, 290, 306
PspOMI	GGGCCC	1 cut(s)	33
PspPI	GGNCC	4 cut(s)	33, 34, 305, 440
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	3 cut(s)	347, 435, 529
SaqAI	TTAA	2 cut(s)	12, 527
SatI	GCNGC	2 cut(s)	318, 410
Sau3AI	GATC	2 cut(s)	24, 415
Sau96I	GGNCC	4 cut(s)	33, 34, 305, 440
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	4 cut(s)	222, 279, 322, 414
SfaNI	GCATC	1 cut(s)	158
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	3 cut(s)	347, 435, 529
Sse9I	AATT	2 cut(s)	195, 366
SsiI	CCGC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	450
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	195, 366
Tru1I	TTAA	2 cut(s)	12, 527
Tru9I	TTAA	2 cut(s)	12, 527
TscAI	CASTG	2 cut(s)	115, 403
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	317, 409
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	115, 403
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	305
XceI	RCATGY	1 cut(s)	11
XmiI	GTMKAC	2 cut(s)	105, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.