Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016648

Physical Location & Seq

Genomic Coordinates Reverse (-)

7839492 .. 7840728

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G098100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

TTCGAGAAAGTTAATCTGAGAAGCGTGAGAAGTAATGCCAAGATAGTAGGGACAATCATCTGTGTTGGGGGAGCCATTTACATGACATTTATCAAAGGCACAAAGTTATTGAACACACAGTTTTTTGGTCAACCCTCAAAATCTCTCTTTGACATGGCGGGTGAGAATTTGAAGCTGGGTTGTCTATTTCTACTTTTATACAGTGTTTTTGCGTCAACTTGGGTGATTCTGCAGGTCCCAGTTTCAGCATGTTGTCCAGACCACCTATATTCAGCTTTCTGGATGTCTTTCTTGGCAACTATACAATCAACAATAGTTTGTCTTTTTTTGGAGCATGACCTACAAGTATGGCATCTGCATTCAGCTCTTGAACTTGGAAGTTTAGTATATGCAGGATTTTATGCTGCTGTGTCCTTTTTCATACAAACCTGGTGTATATCAGAGAAAGGTCCACTCTACGTTGCCATGTTCAGCCCCCTATGTACAGTTATTACGACCATTGTAGCTGGTCTGTTTCTACATGAAGAATTATATTTGGGAAGCTTGGTGGGTGCTATTGCTGTGATCATTGGCTTATATGTTGTGATATGGGGCAAAGCCGAAGACCCCCAAAAGAGGAAACAAGAGGTAGATTCGGAGCAGCCTTCTGATCAGCCGAAAATGATAGAAGTCTTCATTGATGACTCTTCAGAGAAGACGAGCTGTAAAATTGATCTGGAAGAACCACTTCTGCCACAGAAATTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

250

Amino Acids

27.7

Weight (kDa)

5.36

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30420 AT4G30420
malus_domestica	MD06G1126500.v1.1 MD06G1127000.v1.1 MD13G1273600.v1.1
prunus_persica	Prupe.1G098100_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565400_v2.0.a1 Prupe.6G309000_v2.0.a1 Prupe.6G309000_v2.0.a1
pyrus_communis	pycom06g11690
rosa_multiflora	Rmu_sc0001800.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AciI	CCGC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	615
AgsI	TTSAA	3 cut(s)	112, 172, 371
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	6 cut(s)	175, 275, 365, 506, 543, 702
AluI	AGCT	6 cut(s)	175, 275, 365, 506, 543, 702
ApeKI	GCWGC	2 cut(s)	404, 640
ApoI	RAATTY	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	726
AspS9I	GGNCC	2 cut(s)	235, 449
AsuHPI	GGTGA	2 cut(s)	173, 235
AvaII	GGWCC	2 cut(s)	235, 449
BbsI	GAAGAC	3 cut(s)	609, 664, 701
BbvI	GCAGC	2 cut(s)	391, 652
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	2 cut(s)	564, 649
BfmI	CTRYAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	2 cut(s)	405, 641
BlsI	GCNGC	2 cut(s)	406, 642
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	2 cut(s)	235, 449
BmgT120I	GGNCC	2 cut(s)	235, 449
BmiI	GGNNCC	2 cut(s)	73, 237
BmrFI	CCNGG	1 cut(s)	430
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	3 cut(s)	609, 664, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	430
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	391, 652
BseYI	CCCAGC	1 cut(s)	175
BslFI	GGGAC	2 cut(s)	64, 221
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmFI	GGGAC	2 cut(s)	64, 221
BsmI	GAATGC	1 cut(s)	358
Bsp1407I	TGTACA	1 cut(s)	482
Bsp143I	GATC	3 cut(s)	564, 649, 712
BspACI	CCGC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	73, 237
BspMAI	CTGCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	223
BsrGI	TGTACA	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	239
BssMI	GATC	3 cut(s)	564, 649, 712
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	120, 203, 487
Bst6I	CTCTTC	1 cut(s)	691
BstAUI	TGTACA	1 cut(s)	482
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	3 cut(s)	567, 652, 715
BstMBI	GATC	3 cut(s)	564, 649, 712
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	391, 652
BstV2I	GAAGAC	3 cut(s)	609, 664, 701
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	235, 449
CseI	GACGC	1 cut(s)	201
CsiI	ACCWGGT	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	6 cut(s)	82, 154, 249, 335, 466, 521
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	3 cut(s)	566, 651, 714
DpnII	GATC	3 cut(s)	564, 649, 712
Eam1104I	CTCTTC	1 cut(s)	691
EarI	CTCTTC	1 cut(s)	691
Eco47I	GGWCC	2 cut(s)	235, 449
Eco57I	CTGAAG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	428
FaeI	CATG	6 cut(s)	85, 157, 252, 338, 469, 524
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	2 cut(s)	64, 221
FatI	CATG	6 cut(s)	81, 153, 248, 334, 465, 520
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	2 cut(s)	564, 649
Fnu4HI	GCNGC	2 cut(s)	405, 641
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	405, 641
GluI	GCNGC	2 cut(s)	405, 641
GsaI	CCCAGC	1 cut(s)	179
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	85, 157, 252, 338, 469, 524
HincII	GTYRAC	2 cut(s)	131, 216
HindII	GTYRAC	2 cut(s)	131, 216
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	3 cut(s)	226, 632, 683
HphI	GGTGA	2 cut(s)	173, 235
Hpy166II	GTNNAC	3 cut(s)	131, 216, 452
Hpy188I	TCNGA	5 cut(s)	18, 442, 637, 649, 691
Hpy188III	TCNNGA	5 cut(s)	4, 257, 280, 368, 716
Hpy8I	GTNNAC	3 cut(s)	131, 216, 452
HpyAV	CCTTC	1 cut(s)	654
HpyCH4III	ACNGT	3 cut(s)	120, 203, 487
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	232, 358, 392
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	6 cut(s)	85, 157, 252, 338, 469, 524
Ksp22I	TGATCA	2 cut(s)	564, 649
Kzo9I	GATC	3 cut(s)	564, 649, 712
LmnI	GCTCC	3 cut(s)	71, 331, 637
Lsp1109I	GCAGC	2 cut(s)	391, 652
LweI	GCATC	1 cut(s)	361
MabI	ACCWGGT	1 cut(s)	428
MaeII	ACGT	1 cut(s)	459
MalI	GATC	3 cut(s)	566, 651, 714
MboI	GATC	3 cut(s)	564, 649, 712
MboII	GAAGA	6 cut(s)	536, 614, 664, 678, 706, 731
MluCI	AATT	4 cut(s)	166, 527, 708, 740
MlyI	GAGTC	1 cut(s)	677
MnlI	CCTC	3 cut(s)	145, 609, 619
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	2 cut(s)	12, 748
MslI	CAYNNNNRTG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	430
NdeII	GATC	3 cut(s)	564, 649, 712
NlaIII	CATG	6 cut(s)	85, 157, 252, 338, 469, 524
NlaIV	GGNNCC	2 cut(s)	73, 237
NspI	RCATGY	1 cut(s)	252
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	2 cut(s)	226, 632
PkrI	GCNGC	2 cut(s)	406, 642
PleI	GAGTC	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	677
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	73, 237
PspPI	GGNCC	2 cut(s)	235, 449
PspPPI	RGGWCCY	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	12, 748
SatI	GCNGC	2 cut(s)	405, 641
Sau3AI	GATC	3 cut(s)	564, 649, 712
Sau96I	GGNCC	2 cut(s)	235, 449
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	1 cut(s)	430
SexAI	ACCWGGT	1 cut(s)	428
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	235, 449
SmiMI	CAYNNNNRTG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	166, 527, 708, 740
SsiI	CCGC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	3 cut(s)	120, 203, 487
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	3
TasI	AATT	4 cut(s)	166, 527, 708, 740
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	226, 632
Tru1I	TTAA	2 cut(s)	12, 748
Tru9I	TTAA	2 cut(s)	12, 748
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	2 cut(s)	404, 640
TspDTI	ATGAA	3 cut(s)	409, 537, 664
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	235, 449
XapI	RAATTY	1 cut(s)	166
XceI	RCATGY	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.