Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0016648

Physical Location & Seq

Genomic Coordinates Reverse (-)

16932650 .. 16933364

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCTTTTTCGCGTCGTTGCAATCTTCTTTACTCGCCCTGTTTTTCGCAAGAGATCCCAACTCATGGAGGCTGCAGTGGAACCTGCAGCTCATTACCATCATCTACTGTTTTTTGCAGCCATGTTTAGTCCACTTCAAGTCATCACAGTGGCAATGTTTTCGGCAATTGCTTTTGCAGAGCGACTTCACTTTGGCAGCTTGATTGGAGCACTTCTCATTATTGTGGGACTTTACTGTGTGCTGTGGGGAAAGAGGAAAGACGGTCTTGTTGCTGAACACGCAGAGATTGAAAAACTGATGCTCGACGATAATAAGGTGCTGAAGACCATGACTGATATTTCAGTAGTCAATCCTGTCACTAGAGAAAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

125

Amino Acids

14.05

Weight (kDa)

9.3

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30420 AT4G30420
malus_domestica	MD06G1126500.v1.1 MD06G1127000.v1.1 MD13G1273600.v1.1
prunus_persica	Prupe.1G098100_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565400_v2.0.a1 Prupe.6G309000_v2.0.a1 Prupe.6G309000_v2.0.a1
pyrus_communis	pycom06g11690
rosa_multiflora	Rmu_sc0001800.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccII	CGCG	1 cut(s)	12
AclWI	GGATC	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	137, 290
AluBI	AGCT	2 cut(s)	89, 198
AluI	AGCT	2 cut(s)	89, 198
Alw21I	GWGCWC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	48
ApeKI	GCWGC	4 cut(s)	71, 86, 116, 195
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	4 cut(s)	58, 98, 128, 207
BccI	CCATC	1 cut(s)	105
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	2 cut(s)	72, 84
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	4 cut(s)	72, 87, 117, 196
BlsI	GCNGC	4 cut(s)	73, 88, 118, 197
BmiI	GGNNCC	1 cut(s)	81
BmsI	GCATC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	329
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	159
BseXI	GCAGC	4 cut(s)	58, 98, 128, 207
Bsh1236I	CGCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	2 cut(s)	76, 88
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	159
BssMI	GATC	1 cut(s)	53
Bst4CI	ACNGT	4 cut(s)	108, 148, 236, 263
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSFI	CTRYAG	2 cut(s)	72, 84
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	4 cut(s)	58, 98, 128, 207
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 153
BveI	ACCTGC	1 cut(s)	91
CviAII	CATG	4 cut(s)	64, 121, 328, 372
CviJI	RGCY	4 cut(s)	71, 89, 119, 198
CviKI_1	RGCY	4 cut(s)	71, 89, 119, 198
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	341
FaeI	CATG	4 cut(s)	67, 124, 331, 375
FaiI	YATR	4 cut(s)	65, 122, 329, 373
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	4 cut(s)	63, 120, 327, 371
Fnu4HI	GCNGC	4 cut(s)	72, 87, 117, 196
Fsp4HI	GCNGC	4 cut(s)	72, 87, 117, 196
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	4 cut(s)	72, 87, 117, 196
Hin1II	CATG	4 cut(s)	67, 124, 331, 375
Hpy166II	GTNNAC	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	131
Hpy99I	CGWCG	2 cut(s)	17, 308
HpyCH4III	ACNGT	4 cut(s)	108, 148, 236, 263
HpyCH4V	TGCA	5 cut(s)	20, 74, 86, 116, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
Hsp92II	CATG	4 cut(s)	67, 124, 331, 375
Kzo9I	GATC	1 cut(s)	53
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	3 cut(s)	51, 96, 366
Lsp1109I	GCAGC	4 cut(s)	58, 98, 128, 207
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	2 cut(s)	16, 334
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	165
MnlI	CCTC	2 cut(s)	61, 246
MslI	CAYNNNNRTG	2 cut(s)	146, 221
MunI	CAATTG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	67, 124, 331, 375
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	355
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	73, 88, 118, 197
PspN4I	GGNNCC	1 cut(s)	81
PstI	CTGCAG	2 cut(s)	76, 88
PsuI	RGATCY	1 cut(s)	53
RseI	CAYNNNNRTG	2 cut(s)	146, 221
SatI	GCNGC	4 cut(s)	72, 87, 117, 196
Sau3AI	GATC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	4 cut(s)	85, 91, 200, 318
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	2 cut(s)	72, 84
SmiMI	CAYNNNNRTG	2 cut(s)	146, 221
Sse9I	AATT	1 cut(s)	165
SspMI	CTAG	1 cut(s)	360
TaaI	ACNGT	4 cut(s)	108, 148, 236, 263
TaqI	TCGA	1 cut(s)	303
TasI	AATT	1 cut(s)	165
TscAI	CASTG	2 cut(s)	81, 153
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	4 cut(s)	71, 86, 116, 195
Tsp45I	GTSAC	1 cut(s)	355
TspRI	CASTG	2 cut(s)	81, 153
Van91I	CCANNNNNTGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.