Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016648

Physical Location & Seq

Genomic Coordinates Forward (+)

37036930 .. 37037763

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1273600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTTTATTCGGAACCATACAATCAGCAATAGTTACTCTTATCTTAGAGCATGACCTACAGGTATGGAATATCCATTCAACTCTTGAAATTGTAAGTGGTTTATTTGCAGGATTTGCAACGGGTCTAACCTTTTCCGTTCAAACATGGTGTGTATCAATAAGAGGTCCACTCTTCGTTGCCATGTTCACGCCCCTGTGCACAGTTATTACAACCATTGTAGCTGCTGTGTTTCTGCATGAGGAATTATATTTGGGAAGGTACTTATGTACCTTGGTTGGTGGTGTTGCTGTGGTAATTGGTTTATATATTGTGCTATGGGGCAAAGCCAAAGACCAACAAAAGACCAAACAAGAGACAGATCCAAATCAGAGTCGAACTGTCGACCAGATCTTAATTGATGATGACTCCACAGAGAAGACAAGTTGTAAAATTGATCTGGAAGAACCACTTCTGAAGAAAGAAAAATCGCCGTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

161

Amino Acids

17.71

Weight (kDa)

5.09

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30420 AT4G30420
malus_domestica	MD06G1126500.v1.1 MD06G1127000.v1.1 MD13G1273600.v1.1
prunus_persica	Prupe.1G098100_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565200_v2.0.a1 Prupe.1G565400_v2.0.a1 Prupe.6G309000_v2.0.a1 Prupe.6G309000_v2.0.a1
pyrus_communis	pycom06g11690
rosa_multiflora	Rmu_sc0001800.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	384
AclWI	GGATC	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	476
AfaI	GTAC	2 cut(s)	263, 271
AgsI	TTSAA	3 cut(s)	81, 89, 143
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	350
Alw44I	GTGCAC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	356
ApaLI	GTGCAC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	203
BaeI	ACNNNNGTAYC	4 cut(s)	253, 253, 286, 286
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	59
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	425
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	361, 390, 436
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	3 cut(s)	361, 390, 436
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	205, 382
Bst6I	CTCTTC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	46
BstKTI	GATC	3 cut(s)	364, 393, 439
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	3 cut(s)	361, 390, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	2 cut(s)	361, 390
BstYI	RGATCY	2 cut(s)	361, 390
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	262, 270
CviAII	CATG	4 cut(s)	53, 147, 184, 239
CviJI	RGCY	2 cut(s)	224, 329
CviKI_1	RGCY	2 cut(s)	224, 329
CviQI	GTAC	2 cut(s)	262, 270
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	3 cut(s)	363, 392, 438
DpnII	GATC	3 cut(s)	361, 390, 436
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	4 cut(s)	56, 150, 187, 242
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	4 cut(s)	52, 146, 183, 238
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
Hin1II	CATG	4 cut(s)	56, 150, 187, 242
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	373, 407
Hpy166II	GTNNAC	4 cut(s)	170, 189, 201, 385
Hpy188I	TCNGA	3 cut(s)	14, 372, 456
Hpy188III	TCNNGA	2 cut(s)	86, 440
Hpy8I	GTNNAC	4 cut(s)	170, 189, 201, 385
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	205, 382
HpyCH4V	TGCA	4 cut(s)	110, 119, 201, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	4 cut(s)	56, 150, 187, 242
Kzo9I	GATC	3 cut(s)	361, 390, 436
LpnPI	CCDG	5 cut(s)	47, 96, 209, 401, 425
Lsp1109I	GCAGC	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	363, 392, 438
MboI	GATC	3 cut(s)	361, 390, 436
MboII	GAAGA	4 cut(s)	166, 430, 455, 469
MflI	RGATCY	2 cut(s)	361, 390
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	90, 245, 297, 396, 432
MlyI	GAGTC	2 cut(s)	382, 401
MnlI	CCTC	2 cut(s)	158, 235
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	3 cut(s)	361, 390, 436
NlaIII	CATG	4 cut(s)	56, 150, 187, 242
NlaIV	GGNNCC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	381, 401
PpsI	GAGTC	2 cut(s)	381, 401
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	361, 390
RsaI	GTAC	2 cut(s)	263, 271
RsaNI	GTAC	2 cut(s)	262, 270
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	3 cut(s)	361, 390, 436
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	382, 401
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	7 cut(s)	60, 66, 134, 169, 226, 263, 275
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	167
Sse9I	AATT	5 cut(s)	90, 245, 297, 396, 432
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	205, 382
TaqI	TCGA	2 cut(s)	376, 384
TasI	AATT	5 cut(s)	90, 245, 297, 396, 432
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TseI	GCWGC	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.