MD06G1196700.v1.1

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0005502
Physical Location & Seq
Forward (+)
33105519 .. 33112159
6641 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1196700.v1.1.491

Sequence Viewer

Length: 2085 bp
ATGGCAAAGCCTGCGTCTCCGGCCGCGACGAAGTCGACGGCGTCGGTAATCAAAGCCTACTCTTTGCCTCTGATTCTCTTTGCTGCCGCCATGTTCTTCCAGCTCTTCGTTATTCCCAAATCCTTCCCTCCCTCTCACTACGACATTCTTGGTATAAGGAGCTATAGCTCCGTTAAAGAAGTGAAAGAGGCGTATGAAAATATTTCTTCGGTCTGGAATTCAGAAGGGCAGGCTCCGGATACTTCTGATTTTATCAAGATTCAATATGCTTATGAGTTGCTGACAAATCCAGTGTGGAAAAGAAACTATGACATATTCGGCATCGATGAGCAAATAGATGTAGTTGAGAAGGTCACAGAGCAATATAAAGGAGAAAGCTTTTCGAAGATAGACCTTCCTTTGCTAGAGTCTGTTGCTTCTGAAACTGAAGACCATGATGGTACAGTCATGACCTCCAAGGATTTTCAGACTATGTTCGAGGGTAACAAACCATGGCTGATTCAGGTGTGCTCATTTGGGAGCAAAAGCTGCTATCAGTTTTCTGATATGTGGAAGAAAATTGCTGTTTTTTTGGATGGTGTGGCAAATACTGGCATGTTGGAACTTGGAGAGCTTCAGCTAGCGACACATTTTGCTGAGAGAAAACCAACTGGACAACCTTTCTTCAGGAATGGCATTCCTTCTCTTGTTGCTTTTCCACCGGGGTGTAAAACTGCCAATTGTTTTATTAGGTATGAAGGAGATCTCTCTGTTGATTCAGTCACAGATTGGTTTGCAACAACCATACTTGGTTTGCCTCGTATTCTTTACTACTCAAAGGAGACACTGGGGCAGAAGTTTCTAGCAAAAGTTAGTCTTCATAAGGTAAGAGTCATTTTCTTCTCAAAAACAGGGGTGCGTGCTGCTCCATTCATACGCCAAGCTGCTAAAAATTATTGGGCTCATGCTTCTTTTGCATTCGTGCTGTGGCAAGAAGAGGAATCTTCCTTTTGGTTTAATTCGTTTGAGGTGGAATCTGCACCTGCTATAGTGATTTTGAAAGATCCTGGTGTCAAACCTGTTGTGTACCACGGATCTGTTAACTACTTACAGTTCTTACATATTATGGAGCAAAATAAACAACAAGAGCTACCTCAGTTGAGGAGTACAACATCCATGGAATTGGGTTGTGATTCTCGAGGTTATTCTCGTGCTGGATATGATACCGTGACTTGGTATTGTGCTGTTATAGCAGGGAGGCATAGCCCAGAACTCAGTAACATGCGTGGAGCCATTCGCAGGGTTCAAGAGAAATTGTCAAATGAAGTTGAGTCAAGGTCAGCTGATGAAGAGCAATCTATAGCACGAGCAGCAGAAGCGCTTAAAAGCAAACGACTGACATTTGCTTGGCTTGACGGAGAAGCCCAAAAGAAATATTGCCTCTTCTTCCTCCAATCTGAAAACAGTCATGAAACTTGTGGAGAAAGGACAGATATGACTGATGTTCCTCAGTTATTTATTGTACGCTATAAGAGGAATGTGACAGAAGAGAGTGAGAAGCCCGAGAAGAAGCCAAAAAGCATATGGGATGCAGTGCAAGACCAGGAATTAGATCCTGCATCACAGCTTGTGGCAAAGTACAATGGTTCAGATGATACTCAGGAGATTACTAAATGGATCTCGCAAATAATCAACGATGGCGACTCCAGAGATCTTCCTGATTATAGAACAAGAACTCCTCATTTGGTTCCTGAGGATTCAGAGCCAATATGGTCAGCTGGTGTCCAAAGAATTCCTTCAACAAACACGATCATGCAGAGCATCCGTGGAATGTTACGCGGAGTCTATGATCGCATTGGAGATCCAAGGTTTGGTCCAATGCTGCTTCTAGCCGCATTGATGTCTTTCGGTACCATCTGGCTTCGGAGGAGTCAAGCAACTCCAGTGTCAAGTCAACCAAATCAGCCAAATTCCACGGATGAAAGTAGACGAAGAAGGAGAGACCGGGCTAGAAACGTGCTTAATCAAGACCTACCCCCTTCCATCACCGATATGGAACCAAGAGACTCCTATGAAATGCCACTGTCAGGTTCCGACTCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001671 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006457 GO:0006508 GO:0006511 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010563 GO:0010605 GO:0012501 GO:0012505 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016671 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023052 GO:0030163 GO:0030234 GO:0030433 GO:0030544 GO:0031072 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0032268 GO:0032269 GO:0032781 GO:0032991 GO:0033554 GO:0034663 GO:0034975 GO:0034976 GO:0035556 GO:0036503 GO:0042221 GO:0042325 GO:0042326 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0051787 GO:0055114 GO:0060255 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0070059 GO:0071704 GO:0080090 GO:0097190 GO:0097193 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1901698
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

695

Amino Acids

78.63

Weight (kDa)

5.71

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 46 - 104 3e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1030
Acc36I ACCTGC 1 cut(s) 1030
Acc65I GGTACC 1 cut(s) 1889
AccB1I GGYRCC 1 cut(s) 1889
AccB7I CCANNNNNTGG 1 cut(s) 1850
AccI GTMKAC 2 cut(s) 35, 1966
AccII CGCG 2 cut(s) 26, 1818
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 4 cut(s) 24, 87, 1818, 1872
AclWI GGATC 5 cut(s) 1037, 1081, 1586, 1664, 1835
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 3 cut(s) 217, 1770, 1948
AcuI CTGAAG 3 cut(s) 447, 599, 649
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 6 cut(s) 442, 1067, 1147, 1503, 1619, 1891
AfeI AGCGCT 1 cut(s) 1359
AfiI CCNNNNNNNGG 4 cut(s) 1212, 1278, 1850, 2066
AgsI TTSAA 4 cut(s) 263, 1039, 1286, 1779
AjnI CCWGG 2 cut(s) 1045, 1581
AleI CACNNNNGTG 1 cut(s) 703
AloI GAACNNNNNNTCC 2 cut(s) 1699, 1731
Alw21I GWGCWC 1 cut(s) 512
Alw26I GTCTC 4 cut(s) 21, 815, 1974, 2037
AlwI GGATC 5 cut(s) 1037, 1081, 1586, 1664, 1835
Ama87I CYCGRG 2 cut(s) 1176, 1541
Aor13HI TCCGGA 1 cut(s) 235
Aor51HI AGCGCT 1 cut(s) 1359
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 6 cut(s) 83, 528, 902, 923, 1349, 1861
ApoI RAATTY 3 cut(s) 217, 1770, 1948
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 1774
Asp718I GGTACC 1 cut(s) 1889
AspLEI GCGC 1 cut(s) 1360
AspS9I GGNCC 1 cut(s) 1853
AsuC2I CCSGG 2 cut(s) 702, 1985
AsuHPI GGTGA 1 cut(s) 2017
AsuII TTCGAA 1 cut(s) 383
AsuNHI GCTAGC 1 cut(s) 619
AvaI CYCGRG 2 cut(s) 1176, 1541
AvaII GGWCC 1 cut(s) 1853
AxyI CCTNAGG 1 cut(s) 1731
BanI GGYRCC 1 cut(s) 1889
BanII GRGCYC 1 cut(s) 943
BauI CACGAG 2 cut(s) 1188, 1344
BbsI GAAGAC 2 cut(s) 435, 848
Bbv12I GWGCWC 1 cut(s) 512
BbvI GCAGC 6 cut(s) 70, 515, 889, 910, 1361, 1848
BccI CCATC 5 cut(s) 431, 569, 1670, 1901, 2030
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 2 cut(s) 1047, 1583
BciVI GTATCC 1 cut(s) 232
BcnI CCSGG 2 cut(s) 702, 1985
BcoDI GTCTC 4 cut(s) 21, 815, 1974, 2037
BfaI CTAG 5 cut(s) 404, 620, 842, 1868, 1989
BfmI CTRYAG 3 cut(s) 163, 1026, 1338
BfoI RGCGCY 1 cut(s) 1361
BfuAI ACCTGC 1 cut(s) 1030
BfuI GTATCC 1 cut(s) 232
BglII AGATCT 2 cut(s) 742, 1690
BisI GCNGC 9 cut(s) 24, 84, 87, 529, 903, 924, 1350, 1862, 1872
BlsI GCNGC 9 cut(s) 25, 85, 88, 530, 904, 925, 1351, 1863, 1873
Bme1390I CCNGG 4 cut(s) 702, 1047, 1583, 1985
Bme18I GGWCC 1 cut(s) 1853
BmeT110I CYCGRG 2 cut(s) 1176, 1541
BmgT120I GGNCC 1 cut(s) 1853
BmiI GGNNCC 6 cut(s) 234, 1270, 1728, 1891, 2037, 2071
BmrFI CCNGG 4 cut(s) 702, 1047, 1583, 1985
BmrI ACTGGG 1 cut(s) 836
BmsI GCATC 4 cut(s) 330, 1558, 1607, 1809
BmtI GCTAGC 1 cut(s) 623
BmuI ACTGGG 1 cut(s) 836
BpiI GAAGAC 2 cut(s) 435, 848
BpmI CTGGAG 2 cut(s) 1669, 1905
Bpu14I TTCGAA 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 702, 1985
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 1974
BsaJI CCNNGG 8 cut(s) 456, 491, 701, 1069, 1155, 1804, 1844, 1953
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 1699, 1729
Bsc4I CCNNNNNNNGG 4 cut(s) 1212, 1278, 1850, 2066
Bse1I ACTGG 5 cut(s) 290, 595, 655, 831, 1922
Bse21I CCTNAGG 1 cut(s) 1731
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 2 cut(s) 1047, 1583
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 8 cut(s) 456, 491, 701, 1069, 1155, 1804, 1844, 1953
BseGI GGATG 5 cut(s) 580, 1151, 1573, 1800, 1963
BseLI CCNNNNNNNGG 4 cut(s) 1212, 1278, 1850, 2066
BseMII CTCAG 6 cut(s) 627, 1148, 1267, 1502, 1652, 1722
BseNI ACTGG 5 cut(s) 290, 595, 655, 831, 1922
BseRI GAGGAG 3 cut(s) 1156, 1707, 1921
BseX3I CGGCCG 1 cut(s) 21
BseXI GCAGC 6 cut(s) 70, 515, 889, 910, 1361, 1848
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 2 cut(s) 26, 1818
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 1889
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 512
BsiHKCI CYCGRG 2 cut(s) 1176, 1541
BsiSI CCGG 4 cut(s) 20, 236, 701, 1984
BslI CCNNNNNNNGG 4 cut(s) 1212, 1278, 1850, 2066
BsmAI GTCTC 4 cut(s) 21, 815, 1974, 2037
BsmBI CGTCTC 1 cut(s) 21
BsmI GAATGC 2 cut(s) 675, 956
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 1974
BsoBI CYCGRG 2 cut(s) 1176, 1541
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 512, 943
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 9 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1788, 1828, 1840
Bsp19I CCATGG 2 cut(s) 491, 1155
BspACI CCGC 4 cut(s) 24, 87, 1818, 1872
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 6 cut(s) 628, 1147, 1266, 1501, 1651, 1723
BspDI ATCGAT 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 235
BspFNI CGCG 2 cut(s) 26, 1818
BspHI TCATGA 2 cut(s) 447, 1447
BspLI GGNNCC 6 cut(s) 234, 1270, 1728, 1891, 2037, 2071
BspMI ACCTGC 1 cut(s) 1030
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 5 cut(s) 1037, 1081, 1586, 1664, 1835
BspQI GCTCTTC 2 cut(s) 110, 1323
BspT104I TTCGAA 1 cut(s) 383
BspT107I GGYRCC 1 cut(s) 1889
BspTNI GGTCTC 1 cut(s) 1974
BsrI ACTGG 5 cut(s) 290, 595, 655, 831, 1922
BssECI CCNNGG 8 cut(s) 456, 491, 701, 1069, 1155, 1804, 1844, 1953
BssMI GATC 9 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1788, 1828, 1840
BssNI GRCGYC 1 cut(s) 41
BssSI CACGAG 2 cut(s) 1188, 1344
BssT1I CCWWGG 4 cut(s) 456, 491, 1155, 1844
Bst2BI CACGAG 2 cut(s) 1188, 1344
Bst2UI CCWGG 2 cut(s) 1047, 1583
Bst4CI ACNGT 5 cut(s) 445, 1092, 1207, 1445, 2064
Bst6I CTCTTC 5 cut(s) 110, 969, 1323, 1427, 1521
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 2 cut(s) 11, 528
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 4 cut(s) 12, 231, 621, 900
BstDEI CTNAG 6 cut(s) 636, 1134, 1253, 1488, 1638, 1731
BstDSI CCRYGG 5 cut(s) 491, 1069, 1155, 1804, 1953
BstF5I GGATG 5 cut(s) 580, 1151, 1573, 1800, 1963
BstFNI CGCG 2 cut(s) 26, 1818
BstH2I RGCGCY 1 cut(s) 1361
BstHHI GCGC 1 cut(s) 1360
BstKTI GATC 9 cut(s) 745, 1045, 1076, 1594, 1659, 1693, 1791, 1831, 1843
BstMAI GTCTC 4 cut(s) 21, 815, 1974, 2037
BstMBI GATC 9 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1788, 1828, 1840
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 7 cut(s) 11, 20, 528, 953, 1229, 1349, 1355
BstNI CCWGG 2 cut(s) 1047, 1583
BstNSI RCATGY 2 cut(s) 598, 1264
BstSCI CCNGG 4 cut(s) 700, 1045, 1581, 1983
BstSFI CTRYAG 3 cut(s) 163, 1026, 1338
BstUI CGCG 2 cut(s) 26, 1818
BstV1I GCAGC 6 cut(s) 70, 515, 889, 910, 1361, 1848
BstV2I GAAGAC 2 cut(s) 435, 848
BstX2I RGATCY 7 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1840
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 7 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1840
BstZI CGGCCG 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 1731
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 23
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 5 cut(s) 491, 1069, 1155, 1804, 1953
BtsCI GGATG 5 cut(s) 580, 1151, 1573, 1800, 1963
BtsI GCAGTG 1 cut(s) 1578
BtsIMutI CAGTG 5 cut(s) 297, 824, 1578, 1929, 2060
BveI ACCTGC 1 cut(s) 1030
Cac8I GCNNGC 4 cut(s) 12, 231, 621, 900
CciI TCATGA 2 cut(s) 447, 1447
CfoI GCGC 1 cut(s) 1360
Cfr13I GGNCC 1 cut(s) 1853
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 2 cut(s) 3, 30
Csp6I GTAC 6 cut(s) 441, 1066, 1146, 1502, 1618, 1890
CviQI GTAC 6 cut(s) 441, 1066, 1146, 1502, 1618, 1890
DdeI CTNAG 6 cut(s) 636, 1134, 1253, 1488, 1638, 1731
DpnI GATC 9 cut(s) 744, 1044, 1075, 1593, 1658, 1692, 1790, 1830, 1842
DpnII GATC 9 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1788, 1828, 1840
EaeI YGGCCR 1 cut(s) 21
EagI CGGCCG 1 cut(s) 21
Eam1104I CTCTTC 5 cut(s) 110, 969, 1323, 1427, 1521
EarI CTCTTC 5 cut(s) 110, 969, 1323, 1427, 1521
EclXI CGGCCG 1 cut(s) 21
Eco130I CCWWGG 4 cut(s) 456, 491, 1155, 1844
Eco24I GRGCYC 1 cut(s) 943
Eco31I GGTCTC 1 cut(s) 1974
Eco47I GGWCC 1 cut(s) 1853
Eco47III AGCGCT 1 cut(s) 1359
Eco52I CGGCCG 1 cut(s) 21
Eco57I CTGAAG 3 cut(s) 447, 599, 649
Eco81I CCTNAGG 1 cut(s) 1731
Eco88I CYCGRG 2 cut(s) 1176, 1541
EcoRI GAATTC 2 cut(s) 217, 1770
EcoRII CCWGG 2 cut(s) 1045, 1581
EcoT14I CCWWGG 4 cut(s) 456, 491, 1155, 1844
EcoT38I GRGCYC 1 cut(s) 943
ErhI CCWWGG 4 cut(s) 456, 491, 1155, 1844
Esp3I CGTCTC 1 cut(s) 21
FalI AAGNNNNNCTT 4 cut(s) 840, 872, 1759, 1791
FauNDI CATATG 1 cut(s) 1562
FblI GTMKAC 2 cut(s) 35, 1966
Fnu4HI GCNGC 9 cut(s) 24, 84, 87, 529, 903, 924, 1350, 1862, 1872
FokI GGATG 5 cut(s) 587, 1138, 1580, 1787, 1970
FriOI GRGCYC 1 cut(s) 943
Fsp4HI GCNGC 9 cut(s) 24, 84, 87, 529, 903, 924, 1350, 1862, 1872
FspBI CTAG 5 cut(s) 404, 620, 842, 1868, 1989
GlaI GCGC 1 cut(s) 1359
GluI GCNGC 9 cut(s) 24, 84, 87, 529, 903, 924, 1350, 1862, 1872
GsuI CTGGAG 2 cut(s) 1669, 1905
HaeII RGCGCY 1 cut(s) 1361
HaeIII GGCC 1 cut(s) 23
HapII CCGG 4 cut(s) 20, 236, 701, 1984
HgaI GACGC 2 cut(s) 3, 30
HhaI GCGC 1 cut(s) 1360
Hin1I GRCGYC 1 cut(s) 41
Hin6I GCGC 1 cut(s) 1358
HinP1I GCGC 1 cut(s) 1358
HincII GTYRAC 3 cut(s) 36, 1081, 1934
HindII GTYRAC 3 cut(s) 36, 1081, 1934
HindIII AAGCTT 1 cut(s) 376
HpaI GTTAAC 1 cut(s) 1081
HpaII CCGG 4 cut(s) 20, 236, 701, 1984
HphI GGTGA 1 cut(s) 2017
Hpy166II GTNNAC 5 cut(s) 36, 1066, 1081, 1934, 1967
Hpy8I GTNNAC 5 cut(s) 36, 1066, 1081, 1934, 1967
Hpy99I CGWCG 3 cut(s) 31, 40, 46
HpyAV CCTTC 9 cut(s) 133, 218, 343, 404, 690, 731, 1785, 1968, 2028
HpyCH4III ACNGT 5 cut(s) 445, 1092, 1207, 1445, 2064
HpyCH4IV ACGT 1 cut(s) 1995
HpyCH4V TGCA 7 cut(s) 776, 956, 1019, 1571, 1576, 1598, 1795
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 20, 528, 953, 1229, 1349, 1355
HpyF3I CTNAG 6 cut(s) 636, 1134, 1253, 1488, 1638, 1731
HpySE526I ACGT 1 cut(s) 1995
Hsp92I GRCGYC 1 cut(s) 41
HspAI GCGC 1 cut(s) 1358
Kpn2I TCCGGA 1 cut(s) 235
KpnI GGTACC 1 cut(s) 1893
KspAI GTTAAC 1 cut(s) 1081
Kzo9I GATC 9 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1788, 1828, 1840
LguI GCTCTTC 2 cut(s) 110, 1323
LmnI GCTCC 7 cut(s) 159, 173, 238, 519, 910, 1108, 1268
Lsp1109I GCAGC 6 cut(s) 70, 515, 889, 910, 1361, 1848
LweI GCATC 4 cut(s) 330, 1558, 1607, 1809
MaeI CTAG 5 cut(s) 404, 620, 842, 1868, 1989
MaeII ACGT 1 cut(s) 1995
MaeIII GTNAC 7 cut(s) 352, 482, 760, 1207, 1256, 1519, 1812
MalI GATC 9 cut(s) 744, 1044, 1075, 1593, 1658, 1692, 1790, 1830, 1842
MboI GATC 9 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1788, 1828, 1840
MfeI CAATTG 1 cut(s) 718
MflI RGATCY 7 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1840
MhlI GDGCHC 2 cut(s) 512, 943
MlyI GAGTC 8 cut(s) 416, 879, 1319, 1676, 1830, 1918, 2039, 2069
MmeI TCCRAC 1 cut(s) 579
MroI TCCGGA 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 1774
MseI TTAA 5 cut(s) 174, 996, 1080, 1362, 2001
MslI CAYNNNNRTG 3 cut(s) 703, 1790, 2030
MspA1I CMGCKG 2 cut(s) 1322, 1757
MspI CCGG 4 cut(s) 20, 236, 701, 1984
MspR9I CCNGG 4 cut(s) 702, 1047, 1583, 1985
MunI CAATTG 1 cut(s) 718
Mva1269I GAATGC 2 cut(s) 675, 956
MvaI CCWGG 2 cut(s) 1047, 1583
MvnI CGCG 2 cut(s) 26, 1818
MwoI GCNNNNNNNGC 7 cut(s) 11, 20, 528, 953, 1229, 1349, 1355
NciI CCSGG 2 cut(s) 702, 1985
NcoI CCATGG 2 cut(s) 491, 1155
NdeI CATATG 1 cut(s) 1562
NdeII GATC 9 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1788, 1828, 1840
NheI GCTAGC 1 cut(s) 619
NlaIV GGNNCC 6 cut(s) 234, 1270, 1728, 1891, 2037, 2071
NmuCI GTSAC 4 cut(s) 352, 760, 1207, 1519
NspI RCATGY 2 cut(s) 598, 1264
NspV TTCGAA 1 cut(s) 383
OliI CACNNNNGTG 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 1176
PagI TCATGA 2 cut(s) 447, 1447
PaqCI CACCTGC 1 cut(s) 1030
PciSI GCTCTTC 2 cut(s) 110, 1323
PctI GAATGC 2 cut(s) 675, 956
PdmI GAANNNNTTC 1 cut(s) 1774
PfeI GAWTC 8 cut(s) 73, 259, 499, 755, 980, 1013, 1172, 1736
PflFI GACNNNGTC 2 cut(s) 31, 40
PflMI CCANNNNNTGG 1 cut(s) 1850
PkrI GCNGC 9 cut(s) 25, 85, 88, 530, 904, 925, 1351, 1863, 1873
PleI GAGTC 8 cut(s) 415, 878, 1318, 1676, 1829, 1917, 2039, 2069
PpsI GAGTC 8 cut(s) 415, 878, 1318, 1676, 1829, 1917, 2039, 2069
Psp6I CCWGG 2 cut(s) 1045, 1581
PspGI CCWGG 2 cut(s) 1045, 1581
PspN4I GGNNCC 6 cut(s) 234, 1270, 1728, 1891, 2037, 2071
PspPI GGNCC 1 cut(s) 1853
PsuI RGATCY 7 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1840
PsyI GACNNNGTC 2 cut(s) 31, 40
PvuII CAGCTG 2 cut(s) 1322, 1757
RsaI GTAC 6 cut(s) 442, 1067, 1147, 1503, 1619, 1891
RsaNI GTAC 6 cut(s) 441, 1066, 1146, 1502, 1618, 1890
RseI CAYNNNNRTG 3 cut(s) 703, 1790, 2030
SalI GTCGAC 1 cut(s) 34
SapI GCTCTTC 2 cut(s) 110, 1323
SaqAI TTAA 5 cut(s) 174, 996, 1080, 1362, 2001
SatI GCNGC 9 cut(s) 24, 84, 87, 529, 903, 924, 1350, 1862, 1872
Sau3AI GATC 9 cut(s) 742, 1042, 1073, 1591, 1656, 1690, 1788, 1828, 1840
Sau96I GGNCC 1 cut(s) 1853
SchI GAGTC 8 cut(s) 416, 879, 1319, 1676, 1830, 1918, 2039, 2069
ScrFI CCNGG 4 cut(s) 702, 1047, 1583, 1985
SduI GDGCHC 2 cut(s) 512, 943
SfaNI GCATC 4 cut(s) 330, 1558, 1607, 1809
SfcI CTRYAG 3 cut(s) 163, 1026, 1338
Sfr274I CTCGAG 1 cut(s) 1176
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 1 cut(s) 1853
SlaI CTCGAG 1 cut(s) 1176
SmiMI CAYNNNNRTG 3 cut(s) 703, 1790, 2030
SmlI CTYRAG 1 cut(s) 1176
SmoI CTYRAG 1 cut(s) 1176
SsiI CCGC 4 cut(s) 24, 87, 1818, 1872
SspI AATATT 2 cut(s) 202, 1415
SspMI CTAG 5 cut(s) 404, 620, 842, 1868, 1989
StyD4I CCNGG 4 cut(s) 700, 1045, 1581, 1983
StyI CCWWGG 4 cut(s) 456, 491, 1155, 1844
TaaI ACNGT 5 cut(s) 445, 1092, 1207, 1445, 2064
TaiI ACGT 1 cut(s) 1998
TaqI TCGA 5 cut(s) 35, 324, 383, 477, 1177
TaqII GACCGA 1 cut(s) 199
TatI WGTACW 2 cut(s) 1145, 1617
TauI GCSGC 3 cut(s) 26, 89, 1874
TfiI GAWTC 8 cut(s) 73, 259, 499, 755, 980, 1013, 1172, 1736
Tru1I TTAA 5 cut(s) 174, 996, 1080, 1362, 2001
Tru9I TTAA 5 cut(s) 174, 996, 1080, 1362, 2001
TscAI CASTG 5 cut(s) 297, 831, 1578, 1929, 2067
TseFI GTSAC 4 cut(s) 352, 760, 1207, 1519
TseI GCWGC 6 cut(s) 83, 528, 902, 923, 1349, 1861
Tsp45I GTSAC 4 cut(s) 352, 760, 1207, 1519
TspDTI ATGAA 9 cut(s) 210, 750, 848, 901, 1317, 1341, 1464, 1974, 2067
TspGWI ACGGA 5 cut(s) 160, 1086, 1410, 1793, 1970
TspRI CASTG 5 cut(s) 297, 831, 1578, 1929, 2067
Tth111I GACNNNGTC 2 cut(s) 31, 40
Van91I CCANNNNNTGG 1 cut(s) 1850
VpaK11BI GGWCC 1 cut(s) 1853
XapI RAATTY 3 cut(s) 217, 1770, 1948
XceI RCATGY 2 cut(s) 598, 1264
XcmI CCANNNNNNNNNTGG 2 cut(s) 1560, 2029
XhoI CTCGAG 1 cut(s) 1176
XmiI GTMKAC 2 cut(s) 35, 1966
XmnI GAANNNNTTC 1 cut(s) 1774
XspI CTAG 5 cut(s) 404, 620, 842, 1868, 1989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.