Rroxscaffold_3G00271710

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005502
Physical Location & Seq
Reverse (-)
64014777 .. 64020945
6169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271710.1

Sequence Viewer

Length: 2223 bp
ATGGCAATCCCTGCTGCTTCTGCGGCGGCGAAGGCGAAGGCGACGAGCTCGTCGTCAATGGCTTCGACGATCAGAGCCTACTCTCTGCCTCTGATTCTCTTCATCGTCGCCATGTATTTCCAGCTCTCTGTTATTCCCAAATCCTTCCCTCCTTCTCACTACGCCGTTCTTGGTCTGAGGAGTCAGAGCTCCATTGAAGAAGTGAAAGAGGCCTATGACAACGTTTCTTCGACGTGGAATTCAGAAGCGCAAGCTCCGGATTCTCTCGAATTTATAAAGATTCGATATGCTTATGAGTTGCTCACAAATCCATCATGGAAAAGAAACTATGACATTTTTGGCTTTGAGGAGCAAATAGATGTAATTGAGAAGCTCAAAAAGCAATATGCTGGAGAAAGCTTTTCACGGATAGACCTTCCTTTACTAGAGTCTGCTGCTTCTGATTCTGAAGATCATAACCTTCCAGTCATTACCTCTAAGGATTTCCAAACCATGTTTCAGGACAACAAGCCCTGGCTAATTCAGTTGTGCTCATTTGGGAGCAAAAGCTGTGATCAATTTTCTCATGCCTGGAAGAGAATTGCTGGTTTCTTGGATGGTGTGGCAAAAGCTGCTCAGGTAGATCTTGAAGATATTCAGCTAGCAACATATCTTGCTGACAAAAAACCAACCGGACAACCTTTCTTCAGGAATACTCCTGGAACTTTTGAATGTGAACTAAAAACATTCAAAAGTTCAGCTCCTTATTGTAAACATACTGTGCATCTTATAGTTCATAGCATGTTAACTGGTGCCAGCGTTAAGGGCTGCAATACTAGCCTTCCTTCTTTTGTCGCTTTTCCCCAGGGATGTAAAAGTGCCAAGTGCCTTATTAGGTATGAAGGAGACCCCTCAATTGATTCAGTTACAGATTGGTTTGCAACAACCATACTCGGTTTACCTCGTATTCTTTACTACTCAAAGGAGTCACTGGGGGAGAAGTTTCTAGCAAAAGTTAGTCTTCATAAGGTAAAAGTCATTTTCTTCTCAAAAACAGGGGAGCGTGCAGCTCCAATTGTACGCCAAGCTGCTAAAAGTTATTGGGCTCATGCTTCTTTTGCATTTGTGCTGTGGCGAGAGGAGGAATCTTCCTTTTGGTTCAATTCGTTTGAAGTTGAATCTGCACCTGCTATAGTGTTTCTGAAAGATCCTGGGTCTTTCAGCAATTCACGTCTCTTAGATATCATCGAACAGAATAAAGAGCAAGAGCTTCCTCAGTTGAGGAGTACAACATCTATGCAATTGGGTTGCGATGCCCAAGGTTATTCTCGTGCTGGATACGATACCGTTACTTGGTACTGTGCTGTTGTAGCAGGAAGGCATAGCCCACAACTCAGTCAAATGCGCAGAAAAAACTTTGTGTCAGGTCTTGAGTCTCAACTGTACATGGTTCAAGAAACTTTATCGAATGAAGTTGAGTCGATACTGGCTGATGAAGAACAAACAGCACCAGCAGCACGTGCACTTCAAAGTAAACGACTGACATTTGCTTGGCTTGATGGGGAAGCCCAAAAGAAATATTGTCTCTTCTTCCTCCAATCTGAAACCAGCTATGAAACTTGTGGATCAAGGACAGATATGACCGATGTACCTAAGTTATTTATTATCCGCTACAAAAGGAATGTATCAGAAGAGAGTGAGAAGCCAGAGGGAAAGCCTAAAAGCATATGGGATTCCCTTCAGGACCAGGAATTAGATCCTGCAGCACAGCTTGTGGCAAAGTACAATGGTTCAGATGAAATTCCAGAGATTACCAAATGGATCTCCCAAATAATCAAGGATGGTGACGCCAGAGACCTTCCTCACTATAGAACAAGAACTCCTCAACTGGTTCCTGATGATTCGGAACCAATATGGTCCAGCAGTATTCAACGTATTCCTTCAACAAAGACGATAAAGCAGAGCATCATTGGCATTTTACGTGGAGTATATGATCGTATGGAAGATCCAAGAATTGGTCCGATCTTGCTTCTGGCAGCACTAATGTCTTTCGGTAACATCTGGCTTCGAAGGAGTCAAGCAACTCCATTGTCAAATCAACCAAATTCCAAGAATAGAAGTAGTCGAAGGAGGAGAGACCGCAGTGGAGCAGCATCTACTCAAGACCTACCTCCTTCTATTACTGATATGGAACCCAGAGATTCTTATGAAATGCCACTATCAGGTTCCGACTCCGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001671 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006457 GO:0006508 GO:0006511 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010563 GO:0010605 GO:0012501 GO:0012505 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016671 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023052 GO:0030163 GO:0030234 GO:0030433 GO:0030544 GO:0031072 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0032268 GO:0032269 GO:0032781 GO:0032991 GO:0033554 GO:0034663 GO:0034975 GO:0034976 GO:0035556 GO:0036503 GO:0042221 GO:0042325 GO:0042326 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0051787 GO:0055114 GO:0060255 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0070059 GO:0071704 GO:0080090 GO:0097190 GO:0097193 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1901698
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

740

Amino Acids

83.14

Weight (kDa)

6.29

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 53 - 111 2.6e-07 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
AarI CACCTGC 1 cut(s) 1174
AasI GACNNNNNNGTC 1 cut(s) 49
Acc16I TGCGCA 1 cut(s) 1385
Acc36I ACCTGC 1 cut(s) 1174
AccB1I GGYRCC 1 cut(s) 791
AccB7I CCANNNNNTGG 1 cut(s) 1994
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 4 cut(s) 23, 26, 1648, 2119
AclI AACGTT 1 cut(s) 222
AclWI GGATC 5 cut(s) 1181, 1612, 1730, 1808, 1979
AcsI RAATTY 4 cut(s) 238, 269, 1779, 2083
AcuI CTGAAG 3 cut(s) 468, 670, 1703
AcvI CACGTG 1 cut(s) 1499
AcyI GRCGYC 1 cut(s) 1827
AfaI GTAC 6 cut(s) 1059, 1267, 1337, 1424, 1629, 1763
AfiI CCNNNNNNNGG 3 cut(s) 1332, 1994, 2201
AjiI CACGTC 2 cut(s) 234, 1211
AjnI CCWGG 6 cut(s) 512, 569, 697, 843, 1189, 1725
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AloI GAACNNNNNNTCC 2 cut(s) 1843, 1875
Alw21I GWGCWC 4 cut(s) 50, 191, 533, 1504
Alw26I GTCTC 6 cut(s) 879, 1217, 1419, 1568, 1827, 2109
Alw44I GTGCAC 1 cut(s) 1500
AlwI GGATC 5 cut(s) 1181, 1612, 1730, 1808, 1979
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 210
ApaLI GTGCAC 1 cut(s) 1500
ApoI RAATTY 4 cut(s) 238, 269, 1779, 2083
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 2 cut(s) 250, 1386
AspS9I GGNCC 3 cut(s) 1723, 1896, 1997
AsuHPI GGTGA 1 cut(s) 1835
AsuII TTCGAA 1 cut(s) 2047
AsuNHI GCTAGC 1 cut(s) 640
AvaII GGWCC 3 cut(s) 1723, 1896, 1997
BaeGI GKGCMC 1 cut(s) 1504
BaeI ACNNNNGTAYC 2 cut(s) 1611, 1644
BanI GGYRCC 1 cut(s) 791
BanII GRGCYC 3 cut(s) 50, 191, 1087
BauI CACGAG 1 cut(s) 1308
BbrPI CACGTG 1 cut(s) 1499
BbsI GAAGAC 1 cut(s) 992
Bbv12I GWGCWC 4 cut(s) 50, 191, 533, 1504
BbvI GCAGC 9 cut(s) 421, 598, 794, 1054, 1058, 1505, 1754, 2027, 2141
BccI CCATC 4 cut(s) 319, 590, 1532, 1814
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 6 cut(s) 514, 571, 699, 845, 1191, 1727
BciVI GTATCC 1 cut(s) 1310
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 6 cut(s) 879, 1217, 1419, 1568, 1827, 2109
BfaI CTAG 4 cut(s) 425, 641, 816, 986
BfmI CTRYAG 3 cut(s) 1170, 1740, 1846
BfuAI ACCTGC 1 cut(s) 1174
BfuI GTATCC 1 cut(s) 1310
BglII AGATCT 1 cut(s) 622
Bme1390I CCNGG 6 cut(s) 514, 571, 699, 845, 1191, 1727
Bme18I GGWCC 3 cut(s) 1723, 1896, 1997
BmgBI CACGTC 2 cut(s) 234, 1211
BmgT120I GGNCC 3 cut(s) 1723, 1896, 1997
BmiI GGNNCC 5 cut(s) 793, 1872, 1887, 2172, 2206
BmrFI CCNGG 6 cut(s) 514, 571, 699, 845, 1191, 1727
BmrI ACTGGG 1 cut(s) 980
BmsI GCATC 4 cut(s) 772, 1282, 1953, 2141
BmtI GCTAGC 1 cut(s) 644
BmuI ACTGGG 1 cut(s) 980
BpiI GAAGAC 1 cut(s) 992
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 615
Bpu14I TTCGAA 1 cut(s) 2047
BpuEI CTTGAG 2 cut(s) 1430, 2124
BsaAI YACGTR 2 cut(s) 1499, 1961
BsaHI GRCGYC 1 cut(s) 1827
BsaI GGTCTC 3 cut(s) 879, 1827, 2109
BsaJI CCNNGG 5 cut(s) 512, 843, 844, 1190, 1297
BsaWI WCCGGW 2 cut(s) 256, 671
BsaXI ACNNNNNCTCC 2 cut(s) 1843, 1873
Bsc4I CCNNNNNNNGG 3 cut(s) 1332, 1994, 2201
Bse1I ACTGG 5 cut(s) 464, 793, 975, 1470, 1872
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 6 cut(s) 514, 571, 699, 845, 1191, 1727
BseDI CCNNGG 5 cut(s) 512, 843, 844, 1190, 1297
BseGI GGATG 3 cut(s) 601, 854, 1825
BseLI CCNNNNNNNGG 3 cut(s) 1332, 1994, 2201
BseMII CTCAG 4 cut(s) 167, 629, 1268, 1387
BseNI ACTGG 5 cut(s) 464, 793, 975, 1470, 1872
BseRI GAGGAG 6 cut(s) 193, 362, 1133, 1276, 1851, 2125
BseSI GKGCMC 1 cut(s) 1504
BseXI GCAGC 9 cut(s) 421, 598, 794, 1054, 1058, 1505, 1754, 2027, 2141
BsgI GTGCAG 2 cut(s) 1065, 1146
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 791
BsiHKAI GWGCWC 4 cut(s) 50, 191, 533, 1504
BsiSI CCGG 2 cut(s) 257, 672
BslI CCNNNNNNNGG 3 cut(s) 1332, 1994, 2201
BsmAI GTCTC 6 cut(s) 879, 1217, 1419, 1568, 1827, 2109
BsmBI CGTCTC 1 cut(s) 1217
BsnI GGCC 1 cut(s) 212
Bso31I GGTCTC 3 cut(s) 879, 1827, 2109
Bsp119I TTCGAA 1 cut(s) 2047
Bsp1286I GDGCHC 5 cut(s) 50, 191, 533, 1087, 1504
Bsp13I TCCGGA 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 1422
BspACI CCGC 4 cut(s) 23, 26, 1648, 2119
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 4 cut(s) 168, 628, 1267, 1386
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 5 cut(s) 793, 1872, 1887, 2172, 2206
BspMAI CTGCAG 1 cut(s) 1744
BspMI ACCTGC 1 cut(s) 1174
BspOI GCTAGC 1 cut(s) 644
BspPI GGATC 5 cut(s) 1181, 1612, 1730, 1808, 1979
BspT104I TTCGAA 1 cut(s) 2047
BspT107I GGYRCC 1 cut(s) 791
BspTNI GGTCTC 3 cut(s) 879, 1827, 2109
BsrGI TGTACA 1 cut(s) 1422
BsrI ACTGG 5 cut(s) 464, 793, 975, 1470, 1872
BssECI CCNNGG 5 cut(s) 512, 843, 844, 1190, 1297
BssNI GRCGYC 1 cut(s) 1827
BssSI CACGAG 1 cut(s) 1308
BssT1I CCWWGG 1 cut(s) 1297
Bst2BI CACGAG 1 cut(s) 1308
Bst2UI CCWGG 6 cut(s) 514, 571, 699, 845, 1191, 1727
Bst4CI ACNGT 4 cut(s) 760, 1327, 1340, 1422
Bst6I CTCTTC 4 cut(s) 104, 569, 1571, 1665
BstACI GRCGYC 1 cut(s) 1827
BstAPI GCANNNNNTGC 3 cut(s) 11, 611, 1499
BstAUI TGTACA 1 cut(s) 1422
BstBAI YACGTR 2 cut(s) 1499, 1961
BstBI TTCGAA 1 cut(s) 2047
BstC8I GCNNGC 4 cut(s) 252, 642, 796, 1044
BstDEI CTNAG 7 cut(s) 176, 477, 615, 1216, 1254, 1373, 1632
BstF5I GGATG 3 cut(s) 601, 854, 1825
BstHHI GCGC 2 cut(s) 250, 1386
BstMAI GTCTC 6 cut(s) 879, 1217, 1419, 1568, 1827, 2109
BstNI CCWGG 6 cut(s) 514, 571, 699, 845, 1191, 1727
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 6 cut(s) 512, 569, 697, 843, 1189, 1725
BstSFI CTRYAG 3 cut(s) 1170, 1740, 1846
BstSLI GKGCMC 1 cut(s) 1504
BstV1I GCAGC 9 cut(s) 421, 598, 794, 1054, 1058, 1505, 1754, 2027, 2141
BstV2I GAAGAC 1 cut(s) 992
BstX2I RGATCY 5 cut(s) 622, 1186, 1735, 1800, 1984
BstYI RGATCY 5 cut(s) 622, 1186, 1735, 1800, 1984
BsuI GTATCC 1 cut(s) 1310
BsuRI GGCC 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 1305
BtrI CACGTC 2 cut(s) 234, 1211
BtsCI GGATG 3 cut(s) 601, 854, 1825
BtsI GCAGTG 1 cut(s) 2128
BtsIMutI CAGTG 2 cut(s) 968, 2128
BveI ACCTGC 1 cut(s) 1174
Cac8I GCNNGC 4 cut(s) 252, 642, 796, 1044
CfoI GCGC 2 cut(s) 250, 1386
Cfr13I GGNCC 3 cut(s) 1723, 1896, 1997
CseI GACGC 1 cut(s) 1835
Csp6I GTAC 6 cut(s) 1058, 1266, 1336, 1423, 1628, 1762
CviAII CATG 7 cut(s) 112, 315, 493, 566, 781, 1088, 1426
CviQI GTAC 6 cut(s) 1058, 1266, 1336, 1423, 1628, 1762
DdeI CTNAG 7 cut(s) 176, 477, 615, 1216, 1254, 1373, 1632
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 4 cut(s) 104, 569, 1571, 1665
EarI CTCTTC 4 cut(s) 104, 569, 1571, 1665
Ecl136II GAGCTC 2 cut(s) 48, 189
Eco130I CCWWGG 1 cut(s) 1297
Eco147I AGGCCT 1 cut(s) 212
Eco24I GRGCYC 3 cut(s) 50, 191, 1087
Eco31I GGTCTC 3 cut(s) 879, 1827, 2109
Eco32I GATATC 1 cut(s) 1222
Eco47I GGWCC 3 cut(s) 1723, 1896, 1997
Eco53kI GAGCTC 2 cut(s) 48, 189
Eco57I CTGAAG 3 cut(s) 468, 670, 1703
Eco72I CACGTG 1 cut(s) 1499
EcoICRI GAGCTC 2 cut(s) 48, 189
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 6 cut(s) 512, 569, 697, 843, 1189, 1725
EcoRV GATATC 1 cut(s) 1222
EcoT14I CCWWGG 1 cut(s) 1297
EcoT38I GRGCYC 3 cut(s) 50, 191, 1087
ErhI CCWWGG 1 cut(s) 1297
Esp3I CGTCTC 1 cut(s) 1217
FaeI CATG 7 cut(s) 115, 318, 496, 569, 784, 1091, 1429
FalI AAGNNNNNCTT 2 cut(s) 984, 1016
FatI CATG 7 cut(s) 111, 314, 492, 565, 780, 1087, 1425
FauNDI CATATG 1 cut(s) 1706
FbaI TGATCA 1 cut(s) 553
FokI GGATG 3 cut(s) 608, 861, 1832
FriOI GRGCYC 3 cut(s) 50, 191, 1087
FspBI CTAG 4 cut(s) 425, 641, 816, 986
FspI TGCGCA 1 cut(s) 1385
GlaI GCGC 2 cut(s) 249, 1385
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 212
HapII CCGG 2 cut(s) 257, 672
HgaI GACGC 1 cut(s) 1835
HhaI GCGC 2 cut(s) 250, 1386
Hin1I GRCGYC 1 cut(s) 1827
Hin1II CATG 7 cut(s) 115, 318, 496, 569, 784, 1091, 1429
Hin6I GCGC 2 cut(s) 248, 1384
HinP1I GCGC 2 cut(s) 248, 1384
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HindIII AAGCTT 1 cut(s) 397
HpaI GTTAAC 1 cut(s) 786
HpaII CCGG 2 cut(s) 257, 672
HphI GGTGA 1 cut(s) 1835
Hpy166II GTNNAC 6 cut(s) 716, 752, 786, 938, 1502, 1514
Hpy8I GTNNAC 6 cut(s) 716, 752, 786, 938, 1502, 1514
Hpy99I CGWCG 5 cut(s) 46, 55, 70, 110, 235
HpyCH4III ACNGT 4 cut(s) 760, 1327, 1340, 1422
HpyCH4IV ACGT 6 cut(s) 222, 233, 1210, 1498, 1912, 1960
HpyCH4V TGCA 9 cut(s) 763, 810, 920, 1046, 1100, 1163, 1279, 1502, 1742
HpyF3I CTNAG 7 cut(s) 176, 477, 615, 1216, 1254, 1373, 1632
HpySE526I ACGT 6 cut(s) 222, 233, 1210, 1498, 1912, 1960
Hsp92I GRCGYC 1 cut(s) 1827
Hsp92II CATG 7 cut(s) 115, 318, 496, 569, 784, 1091, 1429
HspAI GCGC 2 cut(s) 248, 1384
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 553
KspAI GTTAAC 1 cut(s) 786
LmnI GCTCC 8 cut(s) 194, 259, 349, 540, 745, 1039, 1054, 2126
Lsp1109I GCAGC 9 cut(s) 421, 598, 794, 1054, 1058, 1505, 1754, 2027, 2141
LweI GCATC 4 cut(s) 772, 1282, 1953, 2141
MaeI CTAG 4 cut(s) 425, 641, 816, 986
MaeII ACGT 6 cut(s) 222, 233, 1210, 1498, 1912, 1960
MaeIII GTNAC 5 cut(s) 904, 966, 1327, 1823, 2033
MfeI CAATTG 3 cut(s) 894, 1053, 1280
MflI RGATCY 5 cut(s) 622, 1186, 1735, 1800, 1984
MhlI GDGCHC 5 cut(s) 50, 191, 533, 1087, 1504
MlyI GAGTC 7 cut(s) 190, 437, 974, 1421, 1466, 2062, 2204
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 2 cut(s) 785, 801
MspI CCGG 2 cut(s) 257, 672
MspR9I CCNGG 6 cut(s) 514, 571, 699, 845, 1191, 1727
MunI CAATTG 3 cut(s) 894, 1053, 1280
MvaI CCWGG 6 cut(s) 514, 571, 699, 845, 1191, 1727
NdeI CATATG 1 cut(s) 1706
NheI GCTAGC 1 cut(s) 640
NlaIII CATG 7 cut(s) 115, 318, 496, 569, 784, 1091, 1429
NlaIV GGNNCC 5 cut(s) 793, 1872, 1887, 2172, 2206
NmuCI GTSAC 2 cut(s) 966, 1823
NsbI TGCGCA 1 cut(s) 1385
NspI RCATGY 1 cut(s) 784
NspV TTCGAA 1 cut(s) 2047
PaqCI CACCTGC 1 cut(s) 1174
PasI CCCWGGG 1 cut(s) 844
PceI AGGCCT 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 633
PflMI CCANNNNNTGG 1 cut(s) 1994
PfoI TCCNGGA 1 cut(s) 697
PleI GAGTC 7 cut(s) 189, 436, 973, 1420, 1465, 2061, 2204
PmaCI CACGTG 1 cut(s) 1499
PmlI CACGTG 1 cut(s) 1499
PpsI GAGTC 7 cut(s) 189, 436, 973, 1420, 1465, 2061, 2204
Ppu21I YACGTR 2 cut(s) 1499, 1961
PsiI TTATAA 1 cut(s) 275
Psp124BI GAGCTC 2 cut(s) 50, 191
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 6 cut(s) 512, 569, 697, 843, 1189, 1725
PspCI CACGTG 1 cut(s) 1499
PspGI CCWGG 6 cut(s) 512, 569, 697, 843, 1189, 1725
PspN4I GGNNCC 5 cut(s) 793, 1872, 1887, 2172, 2206
PspPI GGNCC 3 cut(s) 1723, 1896, 1997
PstI CTGCAG 1 cut(s) 1744
PsuI RGATCY 5 cut(s) 622, 1186, 1735, 1800, 1984
RsaI GTAC 6 cut(s) 1059, 1267, 1337, 1424, 1629, 1763
RsaNI GTAC 6 cut(s) 1058, 1266, 1336, 1423, 1628, 1762
SacI GAGCTC 2 cut(s) 50, 191
SaqAI TTAA 2 cut(s) 785, 801
Sau96I GGNCC 3 cut(s) 1723, 1896, 1997
SchI GAGTC 7 cut(s) 190, 437, 974, 1421, 1466, 2062, 2204
ScrFI CCNGG 6 cut(s) 514, 571, 699, 845, 1191, 1727
SduI GDGCHC 5 cut(s) 50, 191, 533, 1087, 1504
SfaNI GCATC 4 cut(s) 772, 1282, 1953, 2141
SfcI CTRYAG 3 cut(s) 1170, 1740, 1846
SfuI TTCGAA 1 cut(s) 2047
SinI GGWCC 3 cut(s) 1723, 1896, 1997
SmlI CTYRAG 2 cut(s) 1409, 2139
SmoI CTYRAG 2 cut(s) 1409, 2139
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 4 cut(s) 23, 26, 1648, 2119
SspI AATATT 1 cut(s) 1559
SspMI CTAG 4 cut(s) 425, 641, 816, 986
SstI GAGCTC 2 cut(s) 50, 191
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 6 cut(s) 512, 569, 697, 843, 1189, 1725
StyI CCWWGG 1 cut(s) 1297
TaaI ACNGT 4 cut(s) 760, 1327, 1340, 1422
TaiI ACGT 6 cut(s) 225, 236, 1213, 1501, 1915, 1963
TaqI TCGA 9 cut(s) 65, 230, 267, 283, 1227, 1445, 1460, 2047, 2104
TaqII GACCGA 1 cut(s) 1637
TatI WGTACW 3 cut(s) 1265, 1422, 1761
TauI GCSGC 2 cut(s) 26, 29
Tru1I TTAA 2 cut(s) 785, 801
Tru9I TTAA 2 cut(s) 785, 801
TscAI CASTG 2 cut(s) 975, 2128
TseFI GTSAC 2 cut(s) 966, 1823
Tsp45I GTSAC 2 cut(s) 966, 1823
TspDTI ATGAA 9 cut(s) 91, 764, 894, 992, 1464, 1488, 1608, 1791, 2202
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 2 cut(s) 975, 2128
Van91I CCANNNNNTGG 1 cut(s) 1994
VneI GTGCAC 1 cut(s) 1500
VpaK11BI GGWCC 3 cut(s) 1723, 1896, 1997
XapI RAATTY 4 cut(s) 238, 269, 1779, 2083
XceI RCATGY 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 4 cut(s) 425, 641, 816, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.