Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005502

Physical Location & Seq

Genomic Coordinates Forward (+)

29181610 .. 29182883

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1203300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAAAACCTGCGTCTTCGGACGCCACGAGAGGATCGTCGACGGCGTCTGTGATCAAAGCCTACTCCTTGCCTCTGATTCTCTTCGTTGCAGCCATGTTCTTCCAGCTCTTCGTTGTTCCCAAATCCTTCCCTCCCTCACAGTACGACGTTCTTGGTATAAAGAGCTATAGCTCCATTGAAGAAGTGAAAAGAGGCGCACGACAATATTTCTTCAGTCTGGAGTTCAGACGGGCAGGCTTTGGATACTTCCGATTTTATCAAGTGCAGATTGAGTATGCTTATGAGTTGCTGACAAATCCTGTGTGGAAAAGAAACTATGACATATTTGGCATCGATGAGCAAATAGTGAGATATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006457 GO:0006508 GO:0006511 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010563 GO:0010605 GO:0012501 GO:0012505 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016671 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023052 GO:0030163 GO:0030234 GO:0030433 GO:0030544 GO:0031072 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0032268 GO:0032269 GO:0032781 GO:0032991 GO:0033554 GO:0034663 GO:0034975 GO:0034976 GO:0035556 GO:0036503 GO:0042221 GO:0042325 GO:0042326 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0051787 GO:0055114 GO:0060255 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0070059 GO:0071704 GO:0080090 GO:0097190 GO:0097193 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

121

Amino Acids

13.89

Weight (kDa)

9.36

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18700 AT1G18700 AT1G18700 AT1G18700 AT1G18700 AT1G18700
fragaria_vesca	FvH4_5g14650 FvH4_5g14650 FvH4_5g14650 FvH4_5g14650 FvH4_5g14650
malus_domestica	MD06G1196700.v1.1 MD14G1203300.v1.1 MD14G1203500.v1.1
prunus_persica	Prupe.5G196200_v2.0.a1
pyrus_communis	pycom06g17360
rosa_chinensis	RchiOBHm_Chr7g0181841
rosa_laevigata	RLG00000005170
rosa_multiflora	Rmu_sc0007912.1_g000002 Rmu_sc0021327.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271710
rosa_rugosa	Rorug06G0444000 Rorug06G0444400
rosa_samantha	Rh3DG296800 Rh7AG046600 Rh7BG046200 Rh7CG046700 Rh7DG045800
rosa_wichuraiana	Rw7G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	199
AcyI	GRCGYC	2 cut(s)	24, 47
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	3 cut(s)	109, 168, 174
AluI	AGCT	3 cut(s)	109, 168, 174
AlwI	GGATC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	92
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	239
BclI	TGATCA	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	336
BsaHI	GRCGYC	2 cut(s)	24, 47
BseCI	ATCGAT	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	35, 54
BspDI	ATCGAT	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	116
BssMI	GATC	2 cut(s)	35, 54
BssNI	GRCGYC	2 cut(s)	24, 47
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	2 cut(s)	89, 116
BstACI	GRCGYC	2 cut(s)	24, 47
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	38, 57
BstMBI	GATC	2 cut(s)	35, 54
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	239
BsuTUI	ATCGAT	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	238
CfoI	GCGC	1 cut(s)	200
ClaI	ATCGAT	1 cut(s)	336
CseI	GACGC	3 cut(s)	3, 32, 36
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	6 cut(s)	62, 95, 109, 168, 174, 240
CviKI_1	RGCY	6 cut(s)	62, 95, 109, 168, 174, 240
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	2 cut(s)	37, 56
DpnII	GATC	2 cut(s)	35, 54
Eam1104I	CTCTTC	2 cut(s)	89, 116
EarI	CTCTTC	2 cut(s)	89, 116
Eco57I	CTGAAG	1 cut(s)	199
FaeI	CATG	1 cut(s)	100
FaiI	YATR	8 cut(s)	98, 161, 171, 279, 285, 321, 326, 357
FatI	CATG	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	242
HgaI	GACGC	3 cut(s)	3, 32, 36
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	2 cut(s)	24, 47
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	22, 78, 230, 254
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	3 cut(s)	43, 46, 152
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	92, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	24, 47
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	35, 54
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	5 cut(s)	24, 119, 206, 222, 315
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	1 cut(s)	150
MalI	GATC	2 cut(s)	37, 56
MboI	GATC	2 cut(s)	35, 54
MboII	GAAGA	6 cut(s)	9, 76, 94, 103, 194, 205
MnlI	CCTC	5 cut(s)	26, 84, 144, 148, 188
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	35, 54
NlaIII	CATG	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	3 cut(s)	26, 35, 44
PfeI	GAWTC	1 cut(s)	79
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	94
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	35, 54
SetI	ASST	5 cut(s)	13, 111, 153, 170, 176
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	169
SgrDI	CGTCGACG	1 cut(s)	40
SspI	AATATT	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	41, 336
TfiI	GAWTC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	92
Tth111I	GACNNNGTC	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.