Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005502

Physical Location & Seq

Genomic Coordinates Reverse (-)

30997604 .. 31008934

Gene Structure 11331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG296800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGTCAAAGGGACAAGTTGATTATGCACATGCACGAAATAATTAATGTAGGTAGATTGGACAAACCGTCTCTCACCTATCACAAGGCAGTTCTTGGTCTGAGGAGGCAGAGCTCCATTGAAGAAGTGAAAGAGGCCTACGACAACGATGTAATTGAGAAGCTCAAAAAACAATATGCTGGAGAAATCTTTTCACATATAGACCTTCCTTTACTAGAGCCTGCTGGTTATGATTCTGAAGATCATAACCTTCCAGTCATTACCTTTAAGGATTCCCAGACCACGTTTCAGGAAAACAAGCCCTGGCTAATTCAGCACCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006457 GO:0006508 GO:0006511 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010563 GO:0010605 GO:0012501 GO:0012505 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016671 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023052 GO:0030163 GO:0030234 GO:0030433 GO:0030544 GO:0031072 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0032268 GO:0032269 GO:0032781 GO:0032991 GO:0033554 GO:0034663 GO:0034975 GO:0034976 GO:0035556 GO:0036503 GO:0042221 GO:0042325 GO:0042326 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0051787 GO:0055114 GO:0060255 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0070059 GO:0071704 GO:0080090 GO:0097190 GO:0097193 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

108

Amino Acids

12.61

Weight (kDa)

5.82

Isoelectric Point (pI)

90.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18700 AT1G18700 AT1G18700 AT1G18700 AT1G18700 AT1G18700
fragaria_vesca	FvH4_5g14650 FvH4_5g14650 FvH4_5g14650 FvH4_5g14650 FvH4_5g14650
malus_domestica	MD06G1196700.v1.1 MD14G1203300.v1.1 MD14G1203500.v1.1
prunus_persica	Prupe.5G196200_v2.0.a1
pyrus_communis	pycom06g17360
rosa_chinensis	RchiOBHm_Chr7g0181841
rosa_laevigata	RLG00000005170
rosa_multiflora	Rmu_sc0007912.1_g000002 Rmu_sc0021327.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271710
rosa_rugosa	Rorug06G0444000 Rorug06G0444400
rosa_samantha	Rh3DG296800 Rh7AG046600 Rh7BG046200 Rh7CG046700 Rh7DG045800
rosa_wichuraiana	Rw7G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	122
AhdI	GACNNNNNGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	2 cut(s)	114, 163
AluI	AGCT	2 cut(s)	114, 163
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	135
AseI	ATTAAT	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	304
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	222
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	6 cut(s)	114, 137, 163, 220, 301, 307
CviKI_1	RGCY	6 cut(s)	114, 137, 163, 220, 301, 307
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
DriI	GACNNNNNGTC	1 cut(s)	67
Eam1105I	GACNNNNNGTC	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	116
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	34
FaiI	YATR	7 cut(s)	26, 32, 177, 198, 200, 231, 246
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	3 cut(s)	4, 233, 272
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	102, 238
Hpy188III	TCNNGA	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	215, 260
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	2 cut(s)	28, 34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	8 cut(s)	165, 210, 234, 267, 275, 289, 290, 316
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	284
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	134, 251
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	3 cut(s)	42, 153, 309
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	96, 99, 127
MseI	TTAA	3 cut(s)	45, 267, 325
MspR9I	CCNGG	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	34
NspI	RCATGY	1 cut(s)	34
PceI	AGGCCT	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	233, 272
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	45, 267, 325
Sau3AI	GATC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	8 cut(s)	55, 80, 116, 165, 207, 252, 266, 287
Sse9I	AATT	3 cut(s)	42, 153, 309
SseBI	AGGCCT	1 cut(s)	137
SspMI	CTAG	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	1 cut(s)	287
TasI	AATT	3 cut(s)	42, 153, 309
TfiI	GAWTC	2 cut(s)	233, 272
Tru1I	TTAA	3 cut(s)	45, 267, 325
Tru9I	TTAA	3 cut(s)	45, 267, 325
VspI	ATTAAT	1 cut(s)	45
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.