Rorug06G0444000

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005502
Physical Location & Seq
Forward (+)
57547838 .. 57551197
3360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0444000.1

Sequence Viewer

Length: 2511 bp
ATGAAAATGGCTCTCGCAGACTTCTATGCTACTCATGCTCACTACAACAGAGAAAGTGCTAGGCACTGCAGAGAAAGTGTCGTCAGTGCAGCTGCTGCAGCTCTAGATCTGATAAAGAATGAACGAGTGAAAACCATCATAGGGCCAGTGACATCCATGCAGACGAGCTTTGTCATTAATCTTGGAAACCAGGCTCATGTACCTATTATATCATTTTCTGCTACAAGCCCTTCTCTTACTTCTCTCCGGATCCCCTATTTCTTTCAATTTGCACAAACTGACTCATCCCAAGTGGAAGCAATTAGTGCAATTGTTCAAGCCTTTGGATGGAGACAAGTCGTGCCTATCTATATAGAAACTGAGTATGGGGAAGGAATCATACCATACTTAACTGACGCCTTGCATGATGTAAATGCTCGTGTCCCATACCGAAGTGTCATTCCCTCATCAGCCACTGATGGTCAAATAGTTCAAGAACTTTCCAAGTTGATGACAATGGAAACCAGAGTCTTCATTGTCCACATGACAACTGATCTATCCTCTAGATTATTTGTCAAGGCAAAAGAGATTGGGATGATGAGTAAAGGGTATGTATGGCTCACTACTAATGAGATACTTAATAGATTACAGTCACAAAATTCTGCTGTCATTGATTCCATGCAAGGTGTACTGGGTGTACAAACTTTTGTTCCACTAACACCAGAGCTTGACGAACTCAAGATACGGTTGAAACAGCAATTCCATACACACAACCCAGCCATTAGTGCTGAATTGGATGTTTTTGGACTTTGGGCTTATGATGCTGTTTTTGCAGTGGCCATGGCAATTGAACAAGTAATTGGAACTCCAACTAGCTTTCCCTTCCAAGAGTCAAATGCTGCTTCCATCAACTCGACAGATCTTGAAGGTTTTCCAGTCTCTCAATATGGGCCAAAACTTCTCAGAGCTCTGTCAACTGCTAGATTTGAAGGGATAGCTGGACATTTCACGGTTGTTGGTGGGAAACGCAACTCATCAAATTTTCAGATAGCTCGAGTAAAATTTCAAGTTCCAAATTCTCTCTCTATTCCCAAAGGATGGGAAATCCCAAAAAAAGGAAAGAAATTGAGAATTGGAGTTCCTGTCAAGGTTGATTTTACTGAGTTTGTTAATGTAGCAAAAGACAAAACTAACACAACGGTTGTCACAGGCTTCAGTGTTGATAACTTTGATGCTGTGGTGGGAGATACAACTATTAGAGCAGACAGGTCATTATATGTGGACTTTACAATGCCATACTCAGAATCTGGTGTAGCAATGGCTGTGCCAGTCATCGACGTCAAGAGCAAACATGTATTGGCTTTCTTGAAGCCTTGGACATGGGACCTGTGGCTAACAATTTGTTTTTTCTTTGTCTATATTGGTTTTGTGGTTTGGGTTCTTGAACATCGAATTAATAAAGAATTCCGTGGCCCTCTCTTACATCAAGTTGGCACCAGTGTCTGGTTCTCATGCTCAACAATGGTGTTTGCACATAGGGAGAGACTTGTTAGCAACTTGGCTAGATTCGTTATGATTATCTGGGTGTTTGTTGTGCTTATATTGACCATAAATTACACAGCCAGTTTATCATCATTGTATACAGTTGAACAACTCCAGCCAACAGTTACTGACATAGAGGTTCTAGTAAGGCATCGGGATAATGTAGGCTGCATAAAGAATTCTTTTGTTTACGATCTCCTGAAACAAGTAGGTTTTGATGATTCTAAGCTGAAGGATTTTGAAACAATAGAAGAAATTGATGAAGCTCTTTCAAAAGGGACTGTGAATGGTGGTATTGCTGCTTTTGTTCATGGAACCCCCAAGATGAAGCTTTTTCTTGCCAAATATTGTTCTAAATATACCATGATTGGACCCATCTTTAAAACTGACGAATTTGCCTTTGTGTTTCCGAAACGTTCCCCACTTGTAGCCGATGTTTCACAGGCAGTCCTAAACATGACTGGAGGACAGGAGATATTGAATCTTGAAAAGGAATGGTTCGAGAAAGAATCCAGTTGTCAAGACTCGAGTGATGCAACAGTTTCTAGCAATCGTCGTGGGCTTGGTAGCTTTTGGGTCCTGTTCCTCATTGCCGGTTTGGCTTCAGTACTTGCTATGGTTATATTTGTAGCTTCCTTCATTTATAGGCATAGGTTCGTGTTAGTGCAACCAGCTGATTCAGAACCCTCAATATGGAGAAAGATCCGAGCTCTGTTCAAAATTTTCAATGAAAAAGACCTCGACTCTCACACTTTCAAAAGGAGTAATCGACAAAGAGATGCAGTTATGGACTCGCCAAACAACTTCCCAGGAACTTTAGTCCACCACAATTCGGATCACACTGATCAAATAAACTCTTTGTTTATTGGAGATCGAGCAACAAACAAGCTCAATTGTTGTGATCAACTACTTCCTTCACCTACTGAGGTTGTGATCACAGTTCAAAAAATGCAGAGAACTACTTCTAACACAGCTCAAGAATACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001671 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006457 GO:0006508 GO:0006511 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010563 GO:0010605 GO:0012501 GO:0012505 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016671 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023052 GO:0030163 GO:0030234 GO:0030433 GO:0030544 GO:0031072 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0032268 GO:0032269 GO:0032781 GO:0032991 GO:0033554 GO:0034663 GO:0034975 GO:0034976 GO:0035556 GO:0036503 GO:0042221 GO:0042325 GO:0042326 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0051787 GO:0055114 GO:0060255 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0070059 GO:0071704 GO:0080090 GO:0097190 GO:0097193 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1901698
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

836

Amino Acids

93.68

Weight (kDa)

7.31

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 25 - 346 6.9e-72 Receptor family ligand binding region
Peripla_BP_6 PF13458 29 - 289 9.5e-14 Periplasmic binding protein
Lig_chan PF00060 453 - 708 1e-32 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1320
AccB1I GGYRCC 1 cut(s) 1472
AccB7I CCANNNNNTGG 2 cut(s) 1077, 1482
AccI GTMKAC 1 cut(s) 1619
AccIII TCCGGA 1 cut(s) 246
AclI AACGTT 1 cut(s) 1936
AclWI GGATC 4 cut(s) 244, 257, 2218, 2364
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 8 cut(s) 637, 1018, 1040, 1054, 1442, 1699, 1913, 2241
AcuI CTGAAG 3 cut(s) 1177, 1772, 2109
AcyI GRCGYC 2 cut(s) 396, 1317
AfaI GTAC 4 cut(s) 201, 669, 678, 2130
AfiI CCNNNNNNNGG 7 cut(s) 141, 327, 1077, 1094, 1482, 2214, 2353
AflIII ACRYGT 1 cut(s) 1330
AjnI CCWGG 2 cut(s) 189, 2329
AjuI GAANNNNNNNTTGG 2 cut(s) 822, 854
Alw21I GWGCWC 2 cut(s) 949, 2233
Alw26I GTCTC 3 cut(s) 325, 922, 1516
AlwI GGATC 4 cut(s) 244, 257, 2218, 2364
AlwNI CAGNNNCTG 5 cut(s) 95, 455, 1286, 1482, 1649
Ama87I CYCGRG 2 cut(s) 1032, 2047
Aor13HI TCCGGA 1 cut(s) 246
AoxI GGCC 4 cut(s) 143, 816, 929, 1450
ApeKI GCWGC 7 cut(s) 89, 92, 95, 98, 878, 1689, 1820
ApoI RAATTY 8 cut(s) 637, 1018, 1040, 1054, 1442, 1699, 1913, 2241
AseI ATTAAT 2 cut(s) 177, 1434
Asp700I GAANNNNTTC 2 cut(s) 909, 2482
AspS9I GGNCC 6 cut(s) 143, 929, 1363, 1451, 1892, 2098
AsuHPI GGTGA 1 cut(s) 2430
AvaI CYCGRG 2 cut(s) 1032, 2047
AvaII GGWCC 3 cut(s) 1363, 1892, 2098
BalI TGGCCA 1 cut(s) 818
BamHI GGATCC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 1472
BanII GRGCYC 2 cut(s) 949, 2233
BarI GAAGNNNNNNTAC 2 cut(s) 363, 395
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 502
Bbv12I GWGCWC 2 cut(s) 949, 2233
BbvI GCAGC 7 cut(s) 79, 82, 101, 110, 865, 1676, 1807
BccI CCATC 6 cut(s) 143, 321, 452, 893, 1071, 1904
BciT130I CCWGG 2 cut(s) 191, 2331
BclI TGATCA 3 cut(s) 2365, 2422, 2454
BcoDI GTCTC 3 cut(s) 325, 922, 1516
BfaI CTAG 8 cut(s) 60, 104, 543, 852, 960, 1542, 1664, 2067
BfmI CTRYAG 2 cut(s) 67, 96
BglI GCCNNNNNGGC 1 cut(s) 2120
BglII AGATCT 2 cut(s) 106, 898
BisI GCNGC 7 cut(s) 90, 93, 96, 99, 879, 1690, 1821
BlsI GCNGC 7 cut(s) 91, 94, 97, 100, 880, 1691, 1822
BmcAI AGTACT 1 cut(s) 2130
Bme1390I CCNGG 2 cut(s) 191, 2331
Bme18I GGWCC 3 cut(s) 1363, 1892, 2098
BmeT110I CYCGRG 2 cut(s) 1032, 2047
BmgT120I GGNCC 6 cut(s) 143, 929, 1363, 1451, 1892, 2098
BmiI GGNNCC 6 cut(s) 251, 1364, 1474, 1837, 1894, 2099
BmrFI CCNGG 2 cut(s) 191, 2331
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 5 cut(s) 790, 1201, 1681, 2044, 2290
BmuI ACTGGG 1 cut(s) 680
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 2 cut(s) 1619, 2004
BpuEI CTTGAG 2 cut(s) 701, 2481
BsaHI GRCGYC 2 cut(s) 396, 1317
BsaJI CCNNGG 4 cut(s) 819, 1352, 1447, 2329
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 1107, 1137
Bsc4I CCNNNNNNNGG 7 cut(s) 141, 327, 1077, 1094, 1482, 2214, 2353
Bse118I RCCGGY 1 cut(s) 2114
Bse1I ACTGG 8 cut(s) 146, 675, 914, 1307, 1476, 1602, 1987, 2034
Bse3DI GCAATG 2 cut(s) 1302, 2109
BseAI TCCGGA 1 cut(s) 246
BseBI CCWGG 2 cut(s) 191, 2331
BseDI CCNNGG 4 cut(s) 819, 1352, 1447, 2329
BseGI GGATG 6 cut(s) 152, 284, 332, 579, 781, 1082
BseLI CCNNNNNNNGG 7 cut(s) 141, 327, 1077, 1094, 1482, 2214, 2353
BseMI GCAATG 2 cut(s) 1302, 2109
BseMII CTCAG 5 cut(s) 351, 955, 1131, 1293, 2436
BseNI ACTGG 8 cut(s) 146, 675, 914, 1307, 1476, 1602, 1987, 2034
BseXI GCAGC 7 cut(s) 79, 82, 101, 110, 865, 1676, 1807
BseYI CCCAGC 1 cut(s) 754
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 4 cut(s) 145, 818, 931, 1452
BshNI GGYRCC 1 cut(s) 1472
BsiHKAI GWGCWC 2 cut(s) 949, 2233
BsiHKCI CYCGRG 2 cut(s) 1032, 2047
BsiSI CCGG 2 cut(s) 247, 2115
BslFI GGGAC 3 cut(s) 407, 1376, 1813
BslI CCNNNNNNNGG 7 cut(s) 141, 327, 1077, 1094, 1482, 2214, 2353
BsmAI GTCTC 3 cut(s) 325, 922, 1516
BsmFI GGGAC 3 cut(s) 407, 1376, 1813
BsnI GGCC 4 cut(s) 145, 818, 931, 1452
BsoBI CYCGRG 2 cut(s) 1032, 2047
Bsp1286I GDGCHC 2 cut(s) 949, 2233
Bsp13I TCCGGA 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 676
Bsp19I CCATGG 1 cut(s) 819
BspANI GGCC 4 cut(s) 145, 818, 931, 1452
BspCNI CTCAG 5 cut(s) 352, 954, 1132, 1292, 2437
BspEI TCCGGA 1 cut(s) 246
BspLI GGNNCC 6 cut(s) 251, 1364, 1474, 1837, 1894, 2099
BspMAI CTGCAG 2 cut(s) 71, 100
BspPI GGATC 4 cut(s) 244, 257, 2218, 2364
BspT107I GGYRCC 1 cut(s) 1472
BsrDI GCAATG 2 cut(s) 1302, 2109
BsrFI RCCGGY 1 cut(s) 2114
BsrGI TGTACA 1 cut(s) 676
BsrI ACTGG 8 cut(s) 146, 675, 914, 1307, 1476, 1602, 1987, 2034
BssAI RCCGGY 1 cut(s) 2114
BssECI CCNNGG 4 cut(s) 819, 1352, 1447, 2329
BssNAI GTATAC 1 cut(s) 1620
BssNI GRCGYC 2 cut(s) 396, 1317
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 819, 1352
Bst1107I GTATAC 1 cut(s) 1620
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 191, 2331
Bst4CI ACNGT 9 cut(s) 630, 726, 991, 1180, 1624, 1645, 1804, 2062, 2461
BstACI GRCGYC 2 cut(s) 396, 1317
BstAPI GCANNNNNTGC 2 cut(s) 95, 305
BstAUI TGTACA 1 cut(s) 676
BstDEI CTNAG 6 cut(s) 360, 941, 1140, 1279, 1746, 2445
BstDSI CCRYGG 2 cut(s) 819, 1447
BstF5I GGATG 6 cut(s) 152, 284, 332, 579, 781, 1082
BstMAI GTCTC 3 cut(s) 325, 922, 1516
BstMWI GCNNNNNNNGC 8 cut(s) 35, 95, 98, 305, 764, 800, 809, 2120
BstNI CCWGG 2 cut(s) 191, 2331
BstNSI RCATGY 1 cut(s) 1334
BstSCI CCNGG 2 cut(s) 189, 2329
BstSFI CTRYAG 2 cut(s) 67, 96
BstV1I GCAGC 7 cut(s) 79, 82, 101, 110, 865, 1676, 1807
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 4 cut(s) 106, 249, 898, 2223
BstYI RGATCY 4 cut(s) 106, 249, 898, 2223
BstZ17I GTATAC 1 cut(s) 1620
BsuRI GGCC 4 cut(s) 145, 818, 931, 1452
BtgI CCRYGG 2 cut(s) 819, 1447
BtsCI GGATG 6 cut(s) 152, 284, 332, 579, 781, 1082
BtsI GCAGTG 2 cut(s) 64, 819
BtsIMutI CAGTG 8 cut(s) 64, 91, 153, 453, 819, 1201, 1483, 2361
CaiI CAGNNNCTG 5 cut(s) 95, 455, 1286, 1482, 1649
Cfr10I RCCGGY 1 cut(s) 2114
Cfr13I GGNCC 6 cut(s) 143, 929, 1363, 1451, 1892, 2098
CseI GACGC 1 cut(s) 404
Csp6I GTAC 4 cut(s) 200, 668, 677, 2129
CspCI CAANNNNNGTGG 2 cut(s) 2059, 2094
CviQI GTAC 4 cut(s) 200, 668, 677, 2129
DdeI CTNAG 6 cut(s) 360, 941, 1140, 1279, 1746, 2445
DraI TTTAAA 1 cut(s) 1903
EaeI YGGCCR 1 cut(s) 816
Ecl136II GAGCTC 2 cut(s) 947, 2231
Eco130I CCWWGG 2 cut(s) 819, 1352
Eco24I GRGCYC 2 cut(s) 949, 2233
Eco47I GGWCC 3 cut(s) 1363, 1892, 2098
Eco53kI GAGCTC 2 cut(s) 947, 2231
Eco57I CTGAAG 3 cut(s) 1177, 1772, 2109
Eco88I CYCGRG 2 cut(s) 1032, 2047
EcoICRI GAGCTC 2 cut(s) 947, 2231
EcoO109I RGGNCCY 2 cut(s) 1363, 2098
EcoRI GAATTC 2 cut(s) 1442, 1699
EcoRII CCWGG 2 cut(s) 189, 2329
EcoT14I CCWWGG 2 cut(s) 819, 1352
EcoT38I GRGCYC 2 cut(s) 949, 2233
ErhI CCWWGG 2 cut(s) 819, 1352
FaqI GGGAC 3 cut(s) 407, 1376, 1813
FbaI TGATCA 3 cut(s) 2365, 2422, 2454
FblI GTMKAC 1 cut(s) 1619
Fnu4HI GCNGC 7 cut(s) 90, 93, 96, 99, 879, 1690, 1821
FokI GGATG 6 cut(s) 139, 271, 339, 586, 788, 1089
FriOI GRGCYC 2 cut(s) 949, 2233
Fsp4HI GCNGC 7 cut(s) 90, 93, 96, 99, 879, 1690, 1821
FspBI CTAG 8 cut(s) 60, 104, 543, 852, 960, 1542, 1664, 2067
GluI GCNGC 7 cut(s) 90, 93, 96, 99, 879, 1690, 1821
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 2 cut(s) 1619, 2004
HaeIII GGCC 4 cut(s) 145, 818, 931, 1452
HapII CCGG 2 cut(s) 247, 2115
HgaI GACGC 1 cut(s) 404
Hin1I GRCGYC 2 cut(s) 396, 1317
HincII GTYRAC 1 cut(s) 954
HindII GTYRAC 1 cut(s) 954
HindIII AAGCTT 1 cut(s) 1850
HpaII CCGG 2 cut(s) 247, 2115
HphI GGTGA 1 cut(s) 2430
Hpy166II GTNNAC 8 cut(s) 520, 668, 677, 954, 1261, 1620, 1711, 2344
Hpy188I TCNGA 8 cut(s) 111, 944, 1026, 1282, 1932, 2203, 2228, 2356
Hpy8I GTNNAC 8 cut(s) 520, 668, 677, 954, 1261, 1620, 1711, 2344
Hpy99I CGWCG 2 cut(s) 1319, 2079
HpyAV CCTTC 8 cut(s) 240, 365, 871, 899, 962, 1747, 2167, 2445
HpyCH4III ACNGT 9 cut(s) 630, 726, 991, 1180, 1624, 1645, 1804, 2062, 2461
HpyCH4IV ACGT 2 cut(s) 1317, 1936
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 95, 98, 305, 764, 800, 809, 2120
HpyF3I CTNAG 6 cut(s) 360, 941, 1140, 1279, 1746, 2445
HpySE526I ACGT 2 cut(s) 1317, 1936
Hsp92I GRCGYC 2 cut(s) 396, 1317
Kpn2I TCCGGA 1 cut(s) 246
Ksp22I TGATCA 3 cut(s) 2365, 2422, 2454
Lsp1109I GCAGC 7 cut(s) 79, 82, 101, 110, 865, 1676, 1807
LweI GCATC 5 cut(s) 790, 1201, 1681, 2044, 2290
MaeI CTAG 8 cut(s) 60, 104, 543, 852, 960, 1542, 1664, 2067
MaeII ACGT 2 cut(s) 1317, 1936
MaeIII GTNAC 4 cut(s) 148, 630, 1183, 1645
MboII GAAGA 2 cut(s) 502, 1784
MfeI CAATTG 4 cut(s) 309, 825, 2413, 2506
MflI RGATCY 4 cut(s) 106, 249, 898, 2223
MhlI GDGCHC 2 cut(s) 949, 2233
MlsI TGGCCA 1 cut(s) 818
MluNI TGGCCA 1 cut(s) 818
MlyI GAGTC 6 cut(s) 275, 516, 878, 2039, 2258, 2306
MmeI TCCRAC 1 cut(s) 872
MnlI CCTC 9 cut(s) 454, 550, 1464, 1651, 1979, 2117, 2218, 2270, 2440
Mox20I TGGCCA 1 cut(s) 818
MroI TCCGGA 1 cut(s) 246
MroXI GAANNNNTTC 2 cut(s) 909, 2482
MscI TGGCCA 1 cut(s) 818
MseI TTAA 6 cut(s) 177, 389, 618, 1149, 1434, 1902
Msp20I TGGCCA 1 cut(s) 818
MspA1I CMGCKG 2 cut(s) 92, 2195
MspI CCGG 2 cut(s) 247, 2115
MspR9I CCNGG 2 cut(s) 191, 2331
MunI CAATTG 4 cut(s) 309, 825, 2413, 2506
MvaI CCWGG 2 cut(s) 191, 2331
MwoI GCNNNNNNNGC 8 cut(s) 35, 95, 98, 305, 764, 800, 809, 2120
NcoI CCATGG 1 cut(s) 819
NlaIV GGNNCC 6 cut(s) 251, 1364, 1474, 1837, 1894, 2099
NmuCI GTSAC 3 cut(s) 148, 630, 1183
NspI RCATGY 1 cut(s) 1334
PaeR7I CTCGAG 2 cut(s) 1032, 2047
PciI ACATGT 1 cut(s) 1330
PdmI GAANNNNTTC 2 cut(s) 909, 2482
PfeI GAWTC 8 cut(s) 375, 653, 1283, 1545, 1742, 2002, 2030, 2198
PflMI CCANNNNNTGG 2 cut(s) 1077, 1482
PkrI GCNGC 7 cut(s) 91, 94, 97, 100, 880, 1691, 1822
PleI GAGTC 6 cut(s) 275, 515, 877, 2039, 2258, 2306
PpsI GAGTC 6 cut(s) 275, 515, 877, 2039, 2258, 2306
PpuMI RGGWCCY 2 cut(s) 1363, 2098
PscI ACATGT 1 cut(s) 1330
PshBI ATTAAT 2 cut(s) 177, 1434
Psp124BI GAGCTC 2 cut(s) 949, 2233
Psp1406I AACGTT 1 cut(s) 1936
Psp5II RGGWCCY 2 cut(s) 1363, 2098
Psp6I CCWGG 2 cut(s) 189, 2329
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 2 cut(s) 189, 2329
PspN4I GGNNCC 6 cut(s) 251, 1364, 1474, 1837, 1894, 2099
PspPI GGNCC 6 cut(s) 143, 929, 1363, 1451, 1892, 2098
PspPPI RGGWCCY 2 cut(s) 1363, 2098
PspXI VCTCGAGB 2 cut(s) 1032, 2047
PsrI GAACNNNNNNTAC 2 cut(s) 705, 737
PstI CTGCAG 2 cut(s) 71, 100
PstNI CAGNNNCTG 5 cut(s) 95, 455, 1286, 1482, 1649
PsuI RGATCY 4 cut(s) 106, 249, 898, 2223
PvuII CAGCTG 2 cut(s) 92, 2195
RsaI GTAC 4 cut(s) 201, 669, 678, 2130
RsaNI GTAC 4 cut(s) 200, 668, 677, 2129
SacI GAGCTC 2 cut(s) 949, 2233
SaqAI TTAA 6 cut(s) 177, 389, 618, 1149, 1434, 1902
SatI GCNGC 7 cut(s) 90, 93, 96, 99, 879, 1690, 1821
Sau96I GGNCC 6 cut(s) 143, 929, 1363, 1451, 1892, 2098
ScaI AGTACT 1 cut(s) 2130
SchI GAGTC 6 cut(s) 275, 516, 878, 2039, 2258, 2306
ScrFI CCNGG 2 cut(s) 191, 2331
SduI GDGCHC 2 cut(s) 949, 2233
SfaNI GCATC 5 cut(s) 790, 1201, 1681, 2044, 2290
SfcI CTRYAG 2 cut(s) 67, 96
Sfr274I CTCGAG 2 cut(s) 1032, 2047
SinI GGWCC 3 cut(s) 1363, 1892, 2098
SlaI CTCGAG 2 cut(s) 1032, 2047
SmlI CTYRAG 4 cut(s) 716, 1032, 2047, 2496
SmoI CTYRAG 4 cut(s) 716, 1032, 2047, 2496
SspI AATATT 1 cut(s) 1868
SspMI CTAG 8 cut(s) 60, 104, 543, 852, 960, 1542, 1664, 2067
SstI GAGCTC 2 cut(s) 949, 2233
StyD4I CCNGG 2 cut(s) 189, 2329
StyI CCWWGG 2 cut(s) 819, 1352
TaaI ACNGT 9 cut(s) 630, 726, 991, 1180, 1624, 1645, 1804, 2062, 2461
TaiI ACGT 2 cut(s) 1320, 1939
TaqI TCGA 9 cut(s) 893, 1033, 1314, 1429, 2022, 2048, 2262, 2290, 2395
TatI WGTACW 3 cut(s) 667, 676, 2128
TfiI GAWTC 8 cut(s) 375, 653, 1283, 1545, 1742, 2002, 2030, 2198
Tru1I TTAA 6 cut(s) 177, 389, 618, 1149, 1434, 1902
Tru9I TTAA 6 cut(s) 177, 389, 618, 1149, 1434, 1902
TscAI CASTG 8 cut(s) 71, 91, 153, 460, 819, 1201, 1483, 2368
TseFI GTSAC 3 cut(s) 148, 630, 1183
TseI GCWGC 7 cut(s) 89, 92, 95, 98, 878, 1689, 1820
Tsp45I GTSAC 3 cut(s) 148, 630, 1183
TspDTI ATGAA 8 cut(s) 17, 135, 502, 1797, 1820, 1862, 2149, 2265
TspGWI ACGGA 1 cut(s) 1436
TspRI CASTG 8 cut(s) 71, 91, 153, 460, 819, 1201, 1483, 2368
Van91I CCANNNNNTGG 2 cut(s) 1077, 1482
VpaK11BI GGWCC 3 cut(s) 1363, 1892, 2098
VspI ATTAAT 2 cut(s) 177, 1434
XapI RAATTY 8 cut(s) 637, 1018, 1040, 1054, 1442, 1699, 1913, 2241
XbaI TCTAGA 2 cut(s) 103, 542
XceI RCATGY 1 cut(s) 1334
XhoI CTCGAG 2 cut(s) 1032, 2047
XmiI GTMKAC 1 cut(s) 1619
XmnI GAANNNNTTC 2 cut(s) 909, 2482
XspI CTAG 8 cut(s) 60, 104, 543, 852, 960, 1542, 1664, 2067
ZraI GACGTC 1 cut(s) 1318
ZrmI AGTACT 1 cut(s) 2130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.