MD06G1197100.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016849
Physical Location & Seq
Forward (+)
33122458 .. 33124101
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1197100.v1.1.491

Sequence Viewer

Length: 1644 bp
ATGTCAGTTGAGGAACCCCTTCCCGCCAACCCCACAACCTCCAGAGCTCTGCAACAACGCCTCTTCTCTCTACTACAGAGCTGCAACTCGATCAAAAAACTCACCCAAATTCACACCCAAATAACAATTCACGGACTCACACAAAAAAGCTACATTCTTGTTCGGATTTTATCACTCTATGTTGCTTCTGGGTGTCTCGATCATGCCCGCAAAGTTTTCGAAAATGTCGAAAACCCAAGTACTACTGTGTGGAACCAGATGATCAGAGGCCACGCTCGGAGCGAAACTCCGCGGAAATCTGTTGAATTGTATAAACGGCTGGTGGGTTCGGAGGCGGAGGCTGATGGGTTTACTTATTCATATGTTCTTAGTGCTTGTGCGAGGTCGGGGTTGGTGAGAGAAGGGGAACAGGTGCACGGGAGGGTTTTGGGAAGTGGGTTTGATTCCAATTTGTTTGTTCAGACCAGTTTGGTTAATTTGTATGCGACGGGTGGAGGGTCGGCTGGTGGTGTTGAGTATGCACGCCGGGTGTTTGATGGTATGCGTGAGAGGAGTGTTGTGAGTTGGAATTCGCTGCTTGTGGGGTATATAAGGTGTCGGGATGTTGATGGGGCGCGGAGGATTTTTGACGAGATGCGGGAGAGGAATGTTGTTTCATGGACCACCATGATTGCGGGGTGTGCTCAGAGTGGGAGGTGTAAGCAAGCTTTGTCTTTGTTTGGTCAGATGAGGAGGGCCGGTGTGGAACTGGATCAGGTGGCGCTAGTGGCAGCATTATCAGCCTGTGCTGAAATAGGGGACTTGAAACTGGGAAGGTGGATTCACTGGTACATCGAAGAGCAATTGTGGATGAAGTCGCAGCCACGGTTGGTGACTCTGTACAATGCACTCATACACATGTACGCCAGCTGTGGTTTAATTGATGATGCCTATAAGTTATTCAAGCAGATGCCAAGAAGAAGCACTGTCTCATGGACCAGCATCATCGTTGGATTTGCAAAACAAGGTCGCGGGGAGGAAGCTCTTCGTATCTTTCAGTTGATGCTAAGCTCGGGAGTTGATTATGTAAGACCTGATGAAATCACTTTCATTGGTGTCCTGTGTGCTTGTAGCCATGCTGGATTAGTTGAGGAGGGCCGCCAGCTTTTCAAGTTCATGACCCAATCTTGCGGACTCACCCCGAGGATTGAGCACTATGGGTGCATGGTTGATCTCTTGAGCCGAGCAGGTTTTCTAGATGAAGCGCATATGCTTGTGGAGAGTATTCCTATGAATCCAAACGAAGCTGTTTGGGGTGCTCTCCTTGGCGGTTGTAGGCTTCACAAGCACGCTGAACTCGCATCAAAAGCGGCTCAAAAATTAACAGTTACACTTGACCCTGACCAGGCTGCAGGATATCTTGTGCTCTTGTCAAACGTGTATGCCTCCGCTAAAAGATGGCTAGATGTTGCTTGTGTGAGACAGAAAATGGTTAAGATGGGCGCGAAAAAGCCCCCGGGTCGAAGTTGGGTTCAAATCAATGGAGCTGTTCATAGTTTTGTGGCAGGTGATAGGACCCATAAGGATGGATCTTTGATCTACGAGATGCTTGGTGAGATCACTAAACCAGACATATCAGATGTGCTTTTCCATATTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

548

Amino Acids

60.82

Weight (kDa)

8.74

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 185 - 217 6.4e-07 PPR repeat family
PPR PF01535 187 - 217 8.6e-07 PPR repeat
PPR_2 PF13041 215 - 263 6.5e-09 PPR repeat family
PPR PF01535 218 - 248 2.7e-08 PPR repeat
PPR_2 PF13041 292 - 321 9.5e-06 PPR repeat family
PPR PF01535 293 - 320 2.2e-06 PPR repeat
PPR_1 PF12854 294 - 317 7.6e-06 PPR repeat
PPR_2 PF13041 321 - 371 1.9e-07 PPR repeat family
PPR PF01535 323 - 353 5.5e-07 PPR repeat
E_motif PF20431 441 - 505 1.1e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016849)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14600
malus_domestica MD06G1197100.v1.1
prunus_persica Prupe.5G197400_v2.0.a1
pyrus_communis pycom06g17390
rosa_chinensis RchiOBHm_Chr7g0181891
rosa_laevigata RLG00000005165
rosa_multiflora Rmu_co8431917.1_g000001 Rmu_sc0021327.1_g000007
rosa_roxburghii Rroxscaffold_3G00271660
rosa_rugosa Rorug06G0444800
rosa_samantha Rh7AG047100 Rh7BG046700 Rh7CG047200
rosa_wichuraiana Rw7G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1535
Acc36I ACCTGC 2 cut(s) 1217, 1535
AccII CGCG 4 cut(s) 292, 616, 1011, 1484
AclWI GGATC 2 cut(s) 759, 1576
AcsI RAATTY 2 cut(s) 108, 568
AfaI GTAC 4 cut(s) 241, 830, 881, 902
AfiI CCNNNNNNNGG 1 cut(s) 1384
AflIII ACRYGT 2 cut(s) 897, 1416
AgsI TTSAA 6 cut(s) 305, 805, 943, 1150, 1514, 1637
AjnI CCWGG 1 cut(s) 1383
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
Alw21I GWGCWC 6 cut(s) 49, 417, 685, 1194, 1300, 1407
Alw26I GTCTC 3 cut(s) 200, 973, 1453
Alw44I GTGCAC 1 cut(s) 413
AlwI GGATC 2 cut(s) 759, 1576
Ama87I CYCGRG 3 cut(s) 1051, 1180, 1495
AoxI GGCC 3 cut(s) 268, 735, 1135
ApaLI GTGCAC 1 cut(s) 413
ApeKI GCWGC 5 cut(s) 81, 574, 770, 859, 1388
ApoI RAATTY 2 cut(s) 108, 568
Asp700I GAANNNNTTC 2 cut(s) 18, 1023
AspLEI GCGC 4 cut(s) 616, 763, 1246, 1484
AspS9I GGNCC 5 cut(s) 660, 735, 975, 1135, 1554
AsuC2I CCSGG 3 cut(s) 527, 1496, 1497
AsuHPI GGTGA 6 cut(s) 94, 406, 883, 1168, 1559, 1604
AsuII TTCGAA 1 cut(s) 219
AvaI CYCGRG 3 cut(s) 1051, 1180, 1495
AvaII GGWCC 3 cut(s) 660, 975, 1554
BaeGI GKGCMC 1 cut(s) 417
BanII GRGCYC 1 cut(s) 49
Bbv12I GWGCWC 6 cut(s) 49, 417, 685, 1194, 1300, 1407
BbvI GCAGC 5 cut(s) 68, 561, 782, 871, 1375
BccI CCATC 6 cut(s) 338, 530, 602, 1431, 1471, 1559
BceAI ACGGC 1 cut(s) 332
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 1 cut(s) 1385
BclI TGATCA 1 cut(s) 261
BcnI CCSGG 3 cut(s) 527, 1496, 1497
BcoDI GTCTC 3 cut(s) 200, 973, 1453
BfaI CTAG 3 cut(s) 764, 1235, 1442
BfmI CTRYAG 2 cut(s) 74, 1389
BfoI RGCGCY 1 cut(s) 764
BfuAI ACCTGC 2 cut(s) 1217, 1535
BisI GCNGC 7 cut(s) 82, 575, 771, 860, 1138, 1350, 1389
BlpI GCTNAGC 1 cut(s) 1046
BlsI GCNGC 7 cut(s) 83, 576, 772, 861, 1139, 1351, 1390
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 4 cut(s) 527, 1385, 1496, 1497
Bme18I GGWCC 3 cut(s) 660, 975, 1554
BmeT110I CYCGRG 3 cut(s) 1051, 1180, 1495
BmgT120I GGNCC 5 cut(s) 660, 735, 975, 1135, 1554
BmiI GGNNCC 3 cut(s) 15, 254, 1556
BmrFI CCNGG 4 cut(s) 527, 1385, 1496, 1497
BmrI ACTGGG 1 cut(s) 818
BmsI GCATC 7 cut(s) 624, 916, 939, 990, 1032, 1349, 1575
BmuI ACTGGG 1 cut(s) 818
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BpmI CTGGAG 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 1046
Bpu14I TTCGAA 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 1237
BpuMI CCSGG 3 cut(s) 527, 1496, 1497
BsaJI CCNNGG 6 cut(s) 290, 863, 1181, 1303, 1494, 1495
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 1 cut(s) 1384
Bse118I RCCGGY 1 cut(s) 737
Bse1I ACTGG 4 cut(s) 465, 753, 813, 830
BseBI CCWGG 1 cut(s) 1385
BseDI CCNNGG 6 cut(s) 290, 863, 1181, 1303, 1494, 1495
BseGI GGATG 3 cut(s) 607, 855, 1570
BseLI CCNNNNNNNGG 1 cut(s) 1384
BseMII CTCAG 1 cut(s) 698
BseNI ACTGG 4 cut(s) 465, 753, 813, 830
BseRI GAGGAG 3 cut(s) 565, 745, 1145
BseSI GKGCMC 1 cut(s) 417
BseXI GCAGC 5 cut(s) 68, 561, 782, 871, 1375
Bsh1236I CGCG 4 cut(s) 292, 616, 1011, 1484
BshFI GGCC 3 cut(s) 270, 737, 1137
BsiHKAI GWGCWC 6 cut(s) 49, 417, 685, 1194, 1300, 1407
BsiHKCI CYCGRG 3 cut(s) 1051, 1180, 1495
BsiSI CCGG 3 cut(s) 526, 738, 1496
BslFI GGGAC 1 cut(s) 812
BslI CCNNNNNNNGG 1 cut(s) 1384
BsmAI GTCTC 3 cut(s) 200, 973, 1453
BsmFI GGGAC 1 cut(s) 812
BsnI GGCC 3 cut(s) 270, 737, 1137
BsoBI CYCGRG 3 cut(s) 1051, 1180, 1495
Bsp119I TTCGAA 1 cut(s) 219
Bsp1286I GDGCHC 6 cut(s) 49, 417, 685, 1194, 1300, 1407
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 8 cut(s) 90, 199, 261, 751, 1210, 1568, 1575, 1596
Bsp1720I GCTNAGC 1 cut(s) 1046
BspANI GGCC 3 cut(s) 270, 737, 1137
BspCNI CTCAG 1 cut(s) 697
BspFNI CGCG 4 cut(s) 292, 616, 1011, 1484
BspHI TCATGA 1 cut(s) 1155
BspLI GGNNCC 3 cut(s) 15, 254, 1556
BspMAI CTGCAG 1 cut(s) 1393
BspMI ACCTGC 2 cut(s) 1217, 1535
BspPI GGATC 2 cut(s) 759, 1576
BspQI GCTCTTC 2 cut(s) 831, 1029
BspT104I TTCGAA 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 737
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 4 cut(s) 465, 753, 813, 830
BssAI RCCGGY 1 cut(s) 737
BssECI CCNNGG 6 cut(s) 290, 863, 1181, 1303, 1494, 1495
BssMI GATC 8 cut(s) 90, 199, 261, 751, 1210, 1568, 1575, 1596
BssT1I CCWWGG 1 cut(s) 1303
Bst2UI CCWGG 1 cut(s) 1385
Bst4CI ACNGT 4 cut(s) 247, 867, 967, 1366
Bst6I CTCTTC 3 cut(s) 68, 831, 1029
BstAUI TGTACA 1 cut(s) 879
BstBI TTCGAA 1 cut(s) 219
BstC8I GCNNGC 6 cut(s) 208, 523, 705, 907, 1142, 1329
BstDEI CTNAG 3 cut(s) 368, 684, 1046
BstDSI CCRYGG 2 cut(s) 290, 863
BstF5I GGATG 3 cut(s) 607, 855, 1570
BstFNI CGCG 4 cut(s) 292, 616, 1011, 1484
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 4 cut(s) 616, 763, 1246, 1484
BstKTI GATC 8 cut(s) 93, 202, 264, 754, 1213, 1571, 1578, 1599
BstMAI GTCTC 3 cut(s) 200, 973, 1453
BstMBI GATC 8 cut(s) 90, 199, 261, 751, 1210, 1568, 1575, 1596
BstMWI GCNNNNNNNGC 6 cut(s) 680, 767, 779, 1324, 1337, 1346
BstNI CCWGG 1 cut(s) 1385
BstNSI RCATGY 1 cut(s) 901
BstSCI CCNGG 4 cut(s) 525, 1383, 1494, 1495
BstSFI CTRYAG 2 cut(s) 74, 1389
BstSLI GKGCMC 1 cut(s) 417
BstUI CGCG 4 cut(s) 292, 616, 1011, 1484
BstV1I GCAGC 5 cut(s) 68, 561, 782, 871, 1375
BstX2I RGATCY 1 cut(s) 1568
BstXI CCANNNNNNTGG 1 cut(s) 1565
BstYI RGATCY 1 cut(s) 1568
BsuRI GGCC 3 cut(s) 270, 737, 1137
BtgI CCRYGG 2 cut(s) 290, 863
BtsCI GGATG 3 cut(s) 607, 855, 1570
BtsIMutI CAGTG 2 cut(s) 823, 963
BveI ACCTGC 2 cut(s) 1217, 1535
Cac8I GCNNGC 6 cut(s) 208, 523, 705, 907, 1142, 1329
CciI TCATGA 1 cut(s) 1155
CfoI GCGC 4 cut(s) 616, 763, 1246, 1484
Cfr10I RCCGGY 1 cut(s) 737
Cfr13I GGNCC 5 cut(s) 660, 735, 975, 1135, 1554
Cfr42I CCGCGG 1 cut(s) 293
Cfr9I CCCGGG 1 cut(s) 1495
Csp6I GTAC 4 cut(s) 240, 829, 880, 901
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 8 cut(s) 203, 657, 667, 898, 972, 1115, 1156, 1204
CviQI GTAC 4 cut(s) 240, 829, 880, 901
DdeI CTNAG 3 cut(s) 368, 684, 1046
DpnI GATC 8 cut(s) 92, 201, 263, 753, 1212, 1570, 1577, 1598
DpnII GATC 8 cut(s) 90, 199, 261, 751, 1210, 1568, 1575, 1596
Eam1104I CTCTTC 3 cut(s) 68, 831, 1029
EarI CTCTTC 3 cut(s) 68, 831, 1029
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 1303
Eco24I GRGCYC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 1397
Eco47I GGWCC 3 cut(s) 660, 975, 1554
Eco53kI GAGCTC 1 cut(s) 47
Eco88I CYCGRG 3 cut(s) 1051, 1180, 1495
EcoICRI GAGCTC 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 1554
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 1383
EcoRV GATATC 1 cut(s) 1397
EcoT14I CCWWGG 1 cut(s) 1303
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 1303
FaeI CATG 8 cut(s) 206, 660, 670, 901, 975, 1118, 1159, 1207
FaqI GGGAC 1 cut(s) 812
FatI CATG 8 cut(s) 202, 656, 666, 897, 971, 1114, 1155, 1203
FauI CCCGC 5 cut(s) 31, 215, 630, 667, 1004
FauNDI CATATG 2 cut(s) 361, 1248
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 7 cut(s) 82, 575, 771, 860, 1138, 1350, 1389
FokI GGATG 3 cut(s) 614, 862, 1577
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 7 cut(s) 82, 575, 771, 860, 1138, 1350, 1389
FspBI CTAG 3 cut(s) 764, 1235, 1442
GlaI GCGC 4 cut(s) 615, 762, 1245, 1483
GluI GCNGC 7 cut(s) 82, 575, 771, 860, 1138, 1350, 1389
GsuI CTGGAG 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 3 cut(s) 270, 737, 1137
HapII CCGG 3 cut(s) 526, 738, 1496
HhaI GCGC 4 cut(s) 616, 763, 1246, 1484
Hin1II CATG 8 cut(s) 206, 660, 670, 901, 975, 1118, 1159, 1207
Hin6I GCGC 4 cut(s) 614, 761, 1244, 1482
HinP1I GCGC 4 cut(s) 614, 761, 1244, 1482
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 6 cut(s) 135, 443, 820, 874, 1173, 1273
HpaII CCGG 3 cut(s) 526, 738, 1496
HphI GGTGA 6 cut(s) 94, 406, 883, 1168, 1559, 1604
Hpy166II GTNNAC 2 cut(s) 351, 415
Hpy188I TCNGA 8 cut(s) 165, 266, 279, 331, 462, 687, 726, 1618
Hpy188III TCNNGA 7 cut(s) 42, 197, 599, 1053, 1156, 1216, 1235
Hpy8I GTNNAC 2 cut(s) 351, 415
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 3 cut(s) 29, 395, 807
HpyCH4III ACNGT 4 cut(s) 247, 867, 967, 1366
HpyCH4IV ACGT 1 cut(s) 1416
HpyCH4V TGCA 8 cut(s) 52, 84, 415, 521, 887, 998, 1203, 1391
HpyF10VI GCNNNNNNNGC 6 cut(s) 680, 767, 779, 1324, 1337, 1346
HpyF3I CTNAG 3 cut(s) 368, 684, 1046
HpySE526I ACGT 1 cut(s) 1416
Hsp92II CATG 8 cut(s) 206, 660, 670, 901, 975, 1118, 1159, 1207
HspAI GCGC 4 cut(s) 614, 761, 1244, 1482
Ksp22I TGATCA 1 cut(s) 261
KspI CCGCGG 1 cut(s) 293
Kzo9I GATC 8 cut(s) 90, 199, 261, 751, 1210, 1568, 1575, 1596
LguI GCTCTTC 2 cut(s) 831, 1029
LmnI GCTCC 2 cut(s) 279, 1523
Lsp1109I GCAGC 5 cut(s) 68, 561, 782, 871, 1375
LweI GCATC 7 cut(s) 624, 916, 939, 990, 1032, 1349, 1575
MaeI CTAG 3 cut(s) 764, 1235, 1442
MaeII ACGT 1 cut(s) 1416
MaeIII GTNAC 2 cut(s) 871, 1366
MalI GATC 8 cut(s) 92, 201, 263, 753, 1212, 1570, 1577, 1598
MboI GATC 8 cut(s) 90, 199, 261, 751, 1210, 1568, 1575, 1596
MboII GAAGA 4 cut(s) 55, 848, 969, 1016
MfeI CAATTG 1 cut(s) 842
MflI RGATCY 1 cut(s) 1568
MhlI GDGCHC 6 cut(s) 49, 417, 685, 1194, 1300, 1407
MluCI AATT 9 cut(s) 108, 126, 305, 448, 475, 568, 842, 918, 1358
MlyI GAGTC 3 cut(s) 129, 868, 1167
MmeI TCCRAC 2 cut(s) 545, 970
MroXI GAANNNNTTC 2 cut(s) 18, 1023
MseI TTAA 4 cut(s) 474, 917, 1361, 1473
MslI CAYNNNNRTG 2 cut(s) 896, 1563
MspA1I CMGCKG 2 cut(s) 292, 909
MspI CCGG 3 cut(s) 526, 738, 1496
MspR9I CCNGG 4 cut(s) 527, 1385, 1496, 1497
MunI CAATTG 1 cut(s) 842
MvaI CCWGG 1 cut(s) 1385
MvnI CGCG 4 cut(s) 292, 616, 1011, 1484
MwoI GCNNNNNNNGC 6 cut(s) 680, 767, 779, 1324, 1337, 1346
NciI CCSGG 3 cut(s) 527, 1496, 1497
NdeI CATATG 2 cut(s) 361, 1248
NdeII GATC 8 cut(s) 90, 199, 261, 751, 1210, 1568, 1575, 1596
NlaIII CATG 8 cut(s) 206, 660, 670, 901, 975, 1118, 1159, 1207
NlaIV GGNNCC 3 cut(s) 15, 254, 1556
NmeAIII GCCGAG 1 cut(s) 1247
NmuCI GTSAC 1 cut(s) 871
NspI RCATGY 1 cut(s) 901
NspV TTCGAA 1 cut(s) 219
PagI TCATGA 1 cut(s) 1155
PaqCI CACCTGC 1 cut(s) 1535
PciI ACATGT 1 cut(s) 897
PciSI GCTCTTC 2 cut(s) 831, 1029
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 279
PdmI GAANNNNTTC 2 cut(s) 18, 1023
PfeI GAWTC 3 cut(s) 443, 820, 1273
PkrI GCNGC 7 cut(s) 83, 576, 772, 861, 1139, 1351, 1390
PleI GAGTC 3 cut(s) 129, 868, 1167
PpsI GAGTC 3 cut(s) 129, 868, 1167
PpuMI RGGWCCY 1 cut(s) 1554
PscI ACATGT 1 cut(s) 897
Psp124BI GAGCTC 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 1554
Psp6I CCWGG 1 cut(s) 1383
PspGI CCWGG 1 cut(s) 1383
PspN4I GGNNCC 3 cut(s) 15, 254, 1556
PspPI GGNCC 5 cut(s) 660, 735, 975, 1135, 1554
PspPPI RGGWCCY 1 cut(s) 1554
PstI CTGCAG 1 cut(s) 1393
PsuI RGATCY 1 cut(s) 1568
PvuII CAGCTG 1 cut(s) 909
RsaI GTAC 4 cut(s) 241, 830, 881, 902
RsaNI GTAC 4 cut(s) 240, 829, 880, 901
RseI CAYNNNNRTG 2 cut(s) 896, 1563
SacI GAGCTC 1 cut(s) 49
SacII CCGCGG 1 cut(s) 293
SapI GCTCTTC 2 cut(s) 831, 1029
SaqAI TTAA 4 cut(s) 474, 917, 1361, 1473
SatI GCNGC 7 cut(s) 82, 575, 771, 860, 1138, 1350, 1389
Sau3AI GATC 8 cut(s) 90, 199, 261, 751, 1210, 1568, 1575, 1596
Sau96I GGNCC 5 cut(s) 660, 735, 975, 1135, 1554
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 3 cut(s) 129, 868, 1167
ScrFI CCNGG 4 cut(s) 527, 1385, 1496, 1497
SduI GDGCHC 6 cut(s) 49, 417, 685, 1194, 1300, 1407
SfaNI GCATC 7 cut(s) 624, 916, 939, 990, 1032, 1349, 1575
SfcI CTRYAG 2 cut(s) 74, 1389
Sfr303I CCGCGG 1 cut(s) 293
SfuI TTCGAA 1 cut(s) 219
SgrBI CCGCGG 1 cut(s) 293
SinI GGWCC 3 cut(s) 660, 975, 1554
SmaI CCCGGG 1 cut(s) 1497
SmiMI CAYNNNNRTG 2 cut(s) 896, 1563
SmlI CTYRAG 1 cut(s) 1216
SmoI CTYRAG 1 cut(s) 1216
Sse9I AATT 9 cut(s) 108, 126, 305, 448, 475, 568, 842, 918, 1358
SspMI CTAG 3 cut(s) 764, 1235, 1442
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 4 cut(s) 525, 1383, 1494, 1495
StyI CCWWGG 1 cut(s) 1303
TaaI ACNGT 4 cut(s) 247, 867, 967, 1366
TaiI ACGT 1 cut(s) 1419
TaqI TCGA 6 cut(s) 89, 198, 219, 228, 834, 1501
TasI AATT 9 cut(s) 108, 126, 305, 448, 475, 568, 842, 918, 1358
TatI WGTACW 2 cut(s) 239, 879
TauI GCSGC 2 cut(s) 1140, 1352
TfiI GAWTC 3 cut(s) 443, 820, 1273
Tru1I TTAA 4 cut(s) 474, 917, 1361, 1473
Tru9I TTAA 4 cut(s) 474, 917, 1361, 1473
TscAI CASTG 2 cut(s) 830, 970
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 5 cut(s) 81, 574, 770, 859, 1388
Tsp45I GTSAC 1 cut(s) 871
TspDTI ATGAA 9 cut(s) 348, 645, 866, 1078, 1092, 1144, 1254, 1286, 1520
TspGWI ACGGA 1 cut(s) 147
TspMI CCCGGG 1 cut(s) 1495
TspRI CASTG 2 cut(s) 830, 970
VneI GTGCAC 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 660, 975, 1554
XapI RAATTY 2 cut(s) 108, 568
XbaI TCTAGA 1 cut(s) 1234
XceI RCATGY 1 cut(s) 901
XmaI CCCGGG 1 cut(s) 1495
XmnI GAANNNNTTC 2 cut(s) 18, 1023
XspI CTAG 3 cut(s) 764, 1235, 1442
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.