Rh7CG047200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016849
Physical Location & Seq
Forward (+)
3204500 .. 3206173
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG047200.1

Sequence Viewer

Length: 1674 bp
ATGGATTTGAAAAGTATAGTTTGCGATTTAAAGGACTACCTTAAGCCCACAACCTCCTCCTCCTCTAGAGCTTTAGAGCAGCGCCTCTTCCATCTATTACAGAGCTGCAACACACTCCGAAATCTGACCCAAATTCATACACAGATATTGGTCCATGGATTCAGCCAAAAAAGCTATATTCTTTCCAAGGTACTAGCGTTGTATGTGGGTTGTGGGTGTCTTGATAATGCGCTGAGAGTTTTCGGGAATGTGAAGAGTCCGAGTACTACTGTGTGGAACCAGATAATCAGAGGGTATGCTGGTAGCGAAACTCCGGGGAAGGCGGTTGAGTTGTATAACAGGCTGGCGGCGACGGAAGCCGAGCCGGATGGGTATACGTATTCGTATGTTGTTAGTGCCTGTGCTAGGTCAGGGATGGTTAGAGAGGGGGAGCAGTTGCATGGGAGAGTTTTGGGTGGTGGGTTTGGTTCTAATGTGTTTGTTCAGTCCAGTTTGGTTAGTTTGTATGCAGGTGGTGGTGTTGAGTGCGCGCGCAAGGTGTTTGATGAAATGCGTGAGAGGAGTGTTGTCAGTTGGAATACGCTGCTTTCGGGGTATGTGAGGAGCCGGGATTTTGATGGGGCGCGGCGAGTTTTTGATGAGATGCCGGAGAGGAATGTGATGTCGTGGACGACAATGATTGCGGGGTGTGCTCAGAATGGGAGGTGTAAGGAAGCTTTGAGTTTGTTTGGGCGGATGAGGAGGGCGGATGTGGAACCGGACCAGGTTGCACTAGTGGCGGTGTTATCGGCCTGTGCTGAAATTGGGGACTTGAGATTGGGAAGGTGGGTTCACTGGTACGTTGAAGAGGGATTGTGTGTTAGAGCTAAGTCGCGGTTGGTGACTTTGTACAATGCACTCATACATATGTACGCCAGTTGTGGTTTGGTTGATGAAGCGTATAAGGTGTTCAAGCAGATGCCTAGAAGGAGCACTGTCTCGTGGACAAGCATCATAGTTGGGTTCGCAAAGCAGGGTCGCGGGGAGGAAGCTCTTCGAATATTTCAATTGATGCTGAGCTCGGGACTTGATGATGTAAGACCCGATGAAATTACTTTCCTTGGGGTGTTGTGTGCCTGTAGCCATGCTGGATTAGTTGATGAGGGCAGAAGGCTTTTCAAGTTCATGACGCAGACTTGGGGACTCGAACCAAGGATTGAGCACTATGGCTGCATGGTCGATCTATTAAGCCGTGCTGGTTTTTTAAATGAAGCTCATGTACTTGTGGAGACTATGCCAATGGAGCCAAATGACGCTGTGTGGGGTGCTCTCCTCGGCGGTTGCATGCTTCACAAGAATTCTGAGCTTGCATCACTTGCAGCTCAAAAGGTAACAGTTGCACTTGACCCTGACCAAGCCGCAGGGTATCTTGTGCTATTATCGAATGTGTATGCTTCTGCTAAAAGATGGCTAGATGTTGCTTATGTGAGACAGAAAATGGTTCACGTGGGCGTGAAGAAGCCTCCAGGTCGAAGTTGGGTTCAAATCAATGGAGCTGTTCATGGTTTTGTGGCAGGTGATAGGACCCATAAACATGAATCTTTTATCTATGAAATGGTTGGCGAGATCACAAGGCAAGCCCAGCAAGAAGGCCGCGAACCAGACACATTAAACATGCTTTCCCTTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

557

Amino Acids

61.85

Weight (kDa)

7.86

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 87 - 136 7.8e-07 PPR repeat family
PPR_2 PF13041 188 - 220 4.5e-08 PPR repeat family
PPR PF01535 190 - 220 6.5e-08 PPR repeat
PPR_2 PF13041 218 - 266 3.7e-09 PPR repeat family
PPR PF01535 222 - 250 1.5e-08 PPR repeat
PPR_2 PF13041 295 - 324 8.3e-06 PPR repeat family
PPR PF01535 296 - 323 6.3e-07 PPR repeat
PPR_1 PF12854 297 - 320 2.9e-06 PPR repeat
PPR_2 PF13041 324 - 374 4.3e-07 PPR repeat family
PPR PF01535 326 - 356 7.5e-07 PPR repeat
E_motif PF20431 444 - 508 1.7e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016849)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14600
malus_domestica MD06G1197100.v1.1
prunus_persica Prupe.5G197400_v2.0.a1
pyrus_communis pycom06g17390
rosa_chinensis RchiOBHm_Chr7g0181891
rosa_laevigata RLG00000005165
rosa_multiflora Rmu_co8431917.1_g000001 Rmu_sc0021327.1_g000007
rosa_roxburghii Rroxscaffold_3G00271660
rosa_rugosa Rorug06G0444800
rosa_samantha Rh7AG047100 Rh7BG046700 Rh7CG047200
rosa_wichuraiana Rw7G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 500, 1544
Acc36I ACCTGC 2 cut(s) 500, 1544
AccI GTMKAC 1 cut(s) 374
AccII CGCG 6 cut(s) 530, 532, 625, 874, 1020, 1635
AcsI RAATTY 2 cut(s) 132, 1336
AcvI CACGTG 1 cut(s) 1486
AfaI GTAC 6 cut(s) 192, 265, 839, 890, 911, 1260
AfiI CCNNNNNNNGG 1 cut(s) 405
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 7 cut(s) 10, 845, 952, 1046, 1159, 1523, 1667
AhlI ACTAGT 1 cut(s) 772
AjnI CCWGG 2 cut(s) 762, 1504
AloI GAACNNNNNNTCC 2 cut(s) 813, 845
Alw21I GWGCWC 5 cut(s) 694, 974, 1061, 1203, 1309
Alw26I GTCTC 3 cut(s) 982, 1262, 1462
Ama87I CYCGRG 1 cut(s) 1060
AoxI GGCC 2 cut(s) 789, 1630
ApeKI GCWGC 5 cut(s) 79, 105, 583, 1209, 1358
ApoI RAATTY 2 cut(s) 132, 1336
Asp700I GAANNNNTTC 1 cut(s) 1032
AspLEI GCGC 6 cut(s) 84, 232, 530, 532, 534, 625
AspS9I GGNCC 3 cut(s) 151, 760, 1563
AsuC2I CCSGG 2 cut(s) 315, 608
AsuHPI GGTGA 2 cut(s) 892, 1568
AsuII TTCGAA 1 cut(s) 1036
AvaI CYCGRG 1 cut(s) 1060
AvaII GGWCC 3 cut(s) 151, 760, 1563
BaeI ACNNNNGTAYC 2 cut(s) 182, 215
BanII GRGCYC 1 cut(s) 1061
BarI GAAGNNNNNNTAC 2 cut(s) 1242, 1274
BauI CACGAG 1 cut(s) 979
BbrPI CACGTG 1 cut(s) 1486
Bbv12I GWGCWC 5 cut(s) 694, 974, 1061, 1203, 1309
BbvI GCAGC 5 cut(s) 91, 92, 570, 1196, 1370
BccI CCATC 5 cut(s) 99, 362, 409, 611, 1440
BceAI ACGGC 1 cut(s) 1215
BciT130I CCWGG 2 cut(s) 764, 1506
BcnI CCSGG 2 cut(s) 315, 608
BcoDI GTCTC 3 cut(s) 982, 1262, 1462
BcuI ACTAGT 1 cut(s) 772
BfaI CTAG 6 cut(s) 66, 194, 405, 773, 963, 1451
BfmI CTRYAG 1 cut(s) 1117
BfoI RGCGCY 1 cut(s) 85
BfrI CTTAAG 1 cut(s) 41
BfuAI ACCTGC 2 cut(s) 500, 1544
BisI GCNGC 9 cut(s) 80, 106, 348, 584, 626, 1210, 1359, 1398, 1633
BlpI GCTNAGC 1 cut(s) 1055
BlsI GCNGC 9 cut(s) 81, 107, 349, 585, 627, 1211, 1360, 1399, 1634
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 4 cut(s) 315, 608, 764, 1506
Bme18I GGWCC 3 cut(s) 151, 760, 1563
BmeT110I CYCGRG 1 cut(s) 1060
BmgT120I GGNCC 3 cut(s) 151, 760, 1563
BmiI GGNNCC 5 cut(s) 278, 605, 756, 1284, 1565
BmrFI CCNGG 4 cut(s) 315, 608, 764, 1506
BmsI GCATC 5 cut(s) 633, 948, 999, 1041, 1358
BpmI CTGGAG 1 cut(s) 1488
Bpu1102I GCTNAGC 1 cut(s) 1055
Bpu14I TTCGAA 1 cut(s) 1036
BpuEI CTTGAG 1 cut(s) 832
BpuMI CCSGG 2 cut(s) 315, 608
BsaAI YACGTR 2 cut(s) 378, 1486
BsaJI CCNNGG 6 cut(s) 154, 186, 314, 1099, 1190, 1312
BsaWI WCCGGW 1 cut(s) 757
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 3 cut(s) 489, 839, 915
BseBI CCWGG 2 cut(s) 764, 1506
BseDI CCNNGG 6 cut(s) 154, 186, 314, 1099, 1190, 1312
BseGI GGATG 4 cut(s) 373, 420, 741, 754
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 4 cut(s) 224, 707, 1046, 1332
BseNI ACTGG 3 cut(s) 489, 839, 915
BsePI GCGCGC 2 cut(s) 528, 530
BseRI GAGGAG 7 cut(s) 46, 49, 52, 574, 616, 754, 1301
BseXI GCAGC 5 cut(s) 91, 92, 570, 1196, 1370
BseYI CCCAGC 1 cut(s) 1620
Bsh1236I CGCG 6 cut(s) 530, 532, 625, 874, 1020, 1635
BshFI GGCC 2 cut(s) 791, 1632
BsiHKAI GWGCWC 5 cut(s) 694, 974, 1061, 1203, 1309
BsiHKCI CYCGRG 1 cut(s) 1060
BsiSI CCGG 5 cut(s) 314, 365, 607, 647, 758
BslFI GGGAC 3 cut(s) 821, 1077, 1194
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 3 cut(s) 982, 1262, 1462
BsmFI GGGAC 3 cut(s) 821, 1077, 1194
BsnI GGCC 2 cut(s) 791, 1632
BsoBI CYCGRG 1 cut(s) 1060
Bsp119I TTCGAA 1 cut(s) 1036
Bsp1286I GDGCHC 5 cut(s) 694, 974, 1061, 1203, 1309
Bsp1407I TGTACA 1 cut(s) 888
Bsp143I GATC 2 cut(s) 1219, 1605
Bsp1720I GCTNAGC 1 cut(s) 1055
Bsp19I CCATGG 1 cut(s) 154
BspANI GGCC 2 cut(s) 791, 1632
BspCNI CTCAG 4 cut(s) 225, 706, 1047, 1333
BspFNI CGCG 6 cut(s) 530, 532, 625, 874, 1020, 1635
BspHI TCATGA 1 cut(s) 1164
BspLI GGNNCC 5 cut(s) 278, 605, 756, 1284, 1565
BspMI ACCTGC 2 cut(s) 500, 1544
BspQI GCTCTTC 1 cut(s) 1038
BspT104I TTCGAA 1 cut(s) 1036
BspTI CTTAAG 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 888
BsrI ACTGG 3 cut(s) 489, 839, 915
BssECI CCNNGG 6 cut(s) 154, 186, 314, 1099, 1190, 1312
BssHII GCGCGC 2 cut(s) 528, 530
BssMI GATC 2 cut(s) 1219, 1605
BssNAI GTATAC 1 cut(s) 375
BssSI CACGAG 1 cut(s) 979
BssT1I CCWWGG 4 cut(s) 154, 186, 1099, 1190
Bst1107I GTATAC 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 979
Bst2UI CCWGG 2 cut(s) 764, 1506
Bst4CI ACNGT 3 cut(s) 271, 976, 1375
Bst6I CTCTTC 4 cut(s) 92, 248, 840, 1038
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 1355
BstAUI TGTACA 1 cut(s) 888
BstBAI YACGTR 2 cut(s) 378, 1486
BstBI TTCGAA 1 cut(s) 1036
BstC8I GCNNGC 6 cut(s) 345, 530, 532, 1325, 1347, 1617
BstDEI CTNAG 5 cut(s) 233, 693, 867, 1055, 1341
BstDSI CCRYGG 1 cut(s) 154
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 4 cut(s) 373, 420, 741, 754
BstFNI CGCG 6 cut(s) 530, 532, 625, 874, 1020, 1635
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 6 cut(s) 84, 232, 530, 532, 534, 625
BstKTI GATC 2 cut(s) 1222, 1608
BstMAI GTCTC 3 cut(s) 982, 1262, 1462
BstMBI GATC 2 cut(s) 1219, 1605
BstMWI GCNNNNNNNGC 7 cut(s) 171, 356, 689, 776, 1282, 1355, 1621
BstNI CCWGG 2 cut(s) 764, 1506
BstNSI RCATGY 2 cut(s) 1327, 1657
BstSCI CCNGG 4 cut(s) 313, 606, 762, 1504
BstSFI CTRYAG 1 cut(s) 1117
BstSNI TACGTA 1 cut(s) 378
BstUI CGCG 6 cut(s) 530, 532, 625, 874, 1020, 1635
BstV1I GCAGC 5 cut(s) 91, 92, 570, 1196, 1370
BstZ17I GTATAC 1 cut(s) 375
BsuRI GGCC 2 cut(s) 791, 1632
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 4 cut(s) 373, 420, 741, 754
BtsIMutI CAGTG 2 cut(s) 832, 972
BveI ACCTGC 2 cut(s) 500, 1544
Cac8I GCNNGC 6 cut(s) 345, 530, 532, 1325, 1347, 1617
CciI TCATGA 1 cut(s) 1164
CfoI GCGC 6 cut(s) 84, 232, 530, 532, 534, 625
Cfr13I GGNCC 3 cut(s) 151, 760, 1563
CseI GACGC 2 cut(s) 1177, 1301
CsiI ACCWGGT 1 cut(s) 762
Csp6I GTAC 6 cut(s) 191, 264, 838, 889, 910, 1259
CviQI GTAC 6 cut(s) 191, 264, 838, 889, 910, 1259
DdeI CTNAG 5 cut(s) 233, 693, 867, 1055, 1341
DpnI GATC 2 cut(s) 1221, 1607
DpnII GATC 2 cut(s) 1219, 1605
DraI TTTAAA 2 cut(s) 30, 1245
Eam1104I CTCTTC 4 cut(s) 92, 248, 840, 1038
EarI CTCTTC 4 cut(s) 92, 248, 840, 1038
EciI GGCGGA 2 cut(s) 748, 761
Ecl136II GAGCTC 1 cut(s) 1059
Eco105I TACGTA 1 cut(s) 378
Eco130I CCWWGG 4 cut(s) 154, 186, 1099, 1190
Eco24I GRGCYC 1 cut(s) 1061
Eco47I GGWCC 3 cut(s) 151, 760, 1563
Eco53kI GAGCTC 1 cut(s) 1059
Eco72I CACGTG 1 cut(s) 1486
Eco88I CYCGRG 1 cut(s) 1060
EcoICRI GAGCTC 1 cut(s) 1059
EcoNI CCTNNNNNAGG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 1563
EcoRI GAATTC 1 cut(s) 1336
EcoRII CCWGG 2 cut(s) 762, 1504
EcoT14I CCWWGG 4 cut(s) 154, 186, 1099, 1190
EcoT38I GRGCYC 1 cut(s) 1061
ErhI CCWWGG 4 cut(s) 154, 186, 1099, 1190
FaqI GGGAC 3 cut(s) 821, 1077, 1194
FauI CCCGC 2 cut(s) 676, 1013
FauNDI CATATG 1 cut(s) 906
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 9 cut(s) 80, 106, 348, 584, 626, 1210, 1359, 1398, 1633
FokI GGATG 4 cut(s) 380, 427, 748, 761
FriOI GRGCYC 1 cut(s) 1061
Fsp4HI GCNGC 9 cut(s) 80, 106, 348, 584, 626, 1210, 1359, 1398, 1633
FspBI CTAG 6 cut(s) 66, 194, 405, 773, 963, 1451
GlaI GCGC 6 cut(s) 83, 231, 529, 531, 533, 624
GluI GCNGC 9 cut(s) 80, 106, 348, 584, 626, 1210, 1359, 1398, 1633
GsaI CCCAGC 1 cut(s) 1624
GsuI CTGGAG 1 cut(s) 1488
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 2 cut(s) 791, 1632
HapII CCGG 5 cut(s) 314, 365, 607, 647, 758
HgaI GACGC 2 cut(s) 1177, 1301
HhaI GCGC 6 cut(s) 84, 232, 530, 532, 534, 625
Hin6I GCGC 6 cut(s) 82, 230, 528, 530, 532, 623
HinP1I GCGC 6 cut(s) 82, 230, 528, 530, 532, 623
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 4 cut(s) 159, 256, 1182, 1577
HpaII CCGG 5 cut(s) 314, 365, 607, 647, 758
HphI GGTGA 2 cut(s) 892, 1568
Hpy166II GTNNAC 5 cut(s) 375, 669, 832, 984, 1483
Hpy188I TCNGA 6 cut(s) 119, 126, 261, 290, 696, 1342
Hpy188III TCNNGA 5 cut(s) 66, 221, 244, 1062, 1165
Hpy8I GTNNAC 5 cut(s) 375, 669, 832, 984, 1483
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 5 cut(s) 313, 816, 960, 1143, 1622
HpyCH4III ACNGT 3 cut(s) 271, 976, 1375
HpyCH4IV ACGT 3 cut(s) 377, 840, 1485
HpyF10VI GCNNNNNNNGC 7 cut(s) 171, 356, 689, 776, 1282, 1355, 1621
HpyF3I CTNAG 5 cut(s) 233, 693, 867, 1055, 1341
HpySE526I ACGT 3 cut(s) 377, 840, 1485
HspAI GCGC 6 cut(s) 82, 230, 528, 530, 532, 623
Kzo9I GATC 2 cut(s) 1219, 1605
LguI GCTCTTC 1 cut(s) 1038
LmnI GCTCC 5 cut(s) 430, 603, 969, 1282, 1532
Lsp1109I GCAGC 5 cut(s) 91, 92, 570, 1196, 1370
LweI GCATC 5 cut(s) 633, 948, 999, 1041, 1358
MabI ACCWGGT 1 cut(s) 762
MaeI CTAG 6 cut(s) 66, 194, 405, 773, 963, 1451
MaeII ACGT 3 cut(s) 377, 840, 1485
MaeIII GTNAC 2 cut(s) 880, 1369
MalI GATC 2 cut(s) 1221, 1607
MboI GATC 2 cut(s) 1219, 1605
MboII GAAGA 5 cut(s) 79, 265, 857, 1025, 1507
MfeI CAATTG 1 cut(s) 1046
MhlI GDGCHC 5 cut(s) 694, 974, 1061, 1203, 1309
MluCI AATT 5 cut(s) 132, 801, 1046, 1089, 1336
MlyI GAGTC 2 cut(s) 265, 1176
MmeI TCCRAC 1 cut(s) 554
MroXI GAANNNNTTC 1 cut(s) 1032
MseI TTAA 5 cut(s) 29, 42, 1226, 1244, 1649
MslI CAYNNNNRTG 2 cut(s) 905, 1572
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 5 cut(s) 314, 365, 607, 647, 758
MspR9I CCNGG 4 cut(s) 315, 608, 764, 1506
MunI CAATTG 1 cut(s) 1046
MvaI CCWGG 2 cut(s) 764, 1506
MvnI CGCG 6 cut(s) 530, 532, 625, 874, 1020, 1635
MwoI GCNNNNNNNGC 7 cut(s) 171, 356, 689, 776, 1282, 1355, 1621
NciI CCSGG 2 cut(s) 315, 608
NcoI CCATGG 1 cut(s) 154
NdeI CATATG 1 cut(s) 906
NdeII GATC 2 cut(s) 1219, 1605
NlaIV GGNNCC 5 cut(s) 278, 605, 756, 1284, 1565
NmeAIII GCCGAG 2 cut(s) 385, 1293
NmuCI GTSAC 1 cut(s) 880
NspI RCATGY 2 cut(s) 1327, 1657
NspV TTCGAA 1 cut(s) 1036
PaeI GCATGC 1 cut(s) 1327
PagI TCATGA 1 cut(s) 1164
PaqCI CACCTGC 2 cut(s) 500, 1544
PauI GCGCGC 2 cut(s) 528, 530
PciSI GCTCTTC 1 cut(s) 1038
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 2 cut(s) 159, 1577
PkrI GCNGC 9 cut(s) 81, 107, 349, 585, 627, 1211, 1360, 1399, 1634
PleI GAGTC 2 cut(s) 264, 1176
PmaCI CACGTG 1 cut(s) 1486
PmlI CACGTG 1 cut(s) 1486
PpsI GAGTC 2 cut(s) 264, 1176
Ppu21I YACGTR 2 cut(s) 378, 1486
PpuMI RGGWCCY 1 cut(s) 1563
Psp124BI GAGCTC 1 cut(s) 1061
Psp5II RGGWCCY 1 cut(s) 1563
Psp6I CCWGG 2 cut(s) 762, 1504
PspCI CACGTG 1 cut(s) 1486
PspFI CCCAGC 1 cut(s) 1620
PspGI CCWGG 2 cut(s) 762, 1504
PspN4I GGNNCC 5 cut(s) 278, 605, 756, 1284, 1565
PspPI GGNCC 3 cut(s) 151, 760, 1563
PspPPI RGGWCCY 1 cut(s) 1563
PsrI GAACNNNNNNTAC 2 cut(s) 932, 964
PteI GCGCGC 2 cut(s) 528, 530
RsaI GTAC 6 cut(s) 192, 265, 839, 890, 911, 1260
RsaNI GTAC 6 cut(s) 191, 264, 838, 889, 910, 1259
RseI CAYNNNNRTG 2 cut(s) 905, 1572
SacI GAGCTC 1 cut(s) 1061
SapI GCTCTTC 1 cut(s) 1038
SaqAI TTAA 5 cut(s) 29, 42, 1226, 1244, 1649
SatI GCNGC 9 cut(s) 80, 106, 348, 584, 626, 1210, 1359, 1398, 1633
Sau3AI GATC 2 cut(s) 1219, 1605
Sau96I GGNCC 3 cut(s) 151, 760, 1563
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 2 cut(s) 265, 1176
ScrFI CCNGG 4 cut(s) 315, 608, 764, 1506
SduI GDGCHC 5 cut(s) 694, 974, 1061, 1203, 1309
SexAI ACCWGGT 1 cut(s) 762
SfaNI GCATC 5 cut(s) 633, 948, 999, 1041, 1358
SfcI CTRYAG 1 cut(s) 1117
SfuI TTCGAA 1 cut(s) 1036
SinI GGWCC 3 cut(s) 151, 760, 1563
SmiMI CAYNNNNRTG 2 cut(s) 905, 1572
SmlI CTYRAG 2 cut(s) 41, 811
SmoI CTYRAG 2 cut(s) 41, 811
SnaBI TACGTA 1 cut(s) 378
SpeI ACTAGT 1 cut(s) 772
SphI GCATGC 1 cut(s) 1327
Sse9I AATT 5 cut(s) 132, 801, 1046, 1089, 1336
SspI AATATT 1 cut(s) 1041
SspMI CTAG 6 cut(s) 66, 194, 405, 773, 963, 1451
SstI GAGCTC 1 cut(s) 1061
StyD4I CCNGG 4 cut(s) 313, 606, 762, 1504
StyI CCWWGG 4 cut(s) 154, 186, 1099, 1190
TaaI ACNGT 3 cut(s) 271, 976, 1375
TaiI ACGT 3 cut(s) 380, 843, 1488
TaqI TCGA 5 cut(s) 1036, 1185, 1218, 1421, 1510
TasI AATT 5 cut(s) 132, 801, 1046, 1089, 1336
TatI WGTACW 3 cut(s) 263, 888, 1258
TauI GCSGC 4 cut(s) 350, 628, 1400, 1635
TfiI GAWTC 2 cut(s) 159, 1577
Tru1I TTAA 5 cut(s) 29, 42, 1226, 1244, 1649
Tru9I TTAA 5 cut(s) 29, 42, 1226, 1244, 1649
TscAI CASTG 2 cut(s) 839, 979
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 5 cut(s) 79, 105, 583, 1209, 1358
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 9 cut(s) 125, 561, 948, 1101, 1153, 1263, 1529, 1590, 1605
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 2 cut(s) 839, 979
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 3 cut(s) 151, 760, 1563
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 2 cut(s) 132, 1336
XbaI TCTAGA 1 cut(s) 65
XceI RCATGY 2 cut(s) 1327, 1657
XcmI CCANNNNNNNNNTGG 2 cut(s) 922, 1512
XmiI GTMKAC 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 6 cut(s) 66, 194, 405, 773, 963, 1451
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.