Rmu_co8431917.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8431917.1
OG0016849
Physical Location & Seq
Reverse (-)
343 .. 1467
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8431917.1_g000001.1.cds

Sequence Viewer

Length: 1125 bp
atgcgtgagaggagtgttgtcagttggaatacgctgctttcggggtatgtgaggagccgggattttgatggggcgcggcgagtttttgatgagatgccggagaggaatgtggtgtcgtggacgacaatgattgcggggtgtgctcagaatgggaggtgcaaggaagctttgagtttgtttgggcggatgaggaaggcggatgtggaaccggaccaggttgcgctagtggcggtgttatcggcctgtgctgaaattggggacttgagattgggaaggtgggttcactggtacgttgaagagggattgtgtgttagagctaagtcgcggttggtgactttgtacaatgcactcatacatatgtacgccagttgtggtttggttgatgaagcgtataaggtgttcaagcagatgcctagaaggagcactgtctcgtggacaagcatcatagttgggttcgcaaagcagggttgcggggaggaagctcttcgaatatttcaattgatgctgagctcggaacttgatgatgtaagacccgatgaaattactttccttggggtgttgtgtgcctgtagccatgctggattagttgatgagggcagaaggcttttcaagttcatgacgcagacttggggactcgaaccaaggattgagcactatggctgcatggtcgatctattaagccgtgctggttttttaaatgaagctcatgttcttgtggagactatgccaatggagccaaatgacgctgtgtggggtgctctcctcggcggttgcatgcttcacaagaattctgagcttgcatcacttgcagctcaaaatttaacagttgcacttgaccctgaccaagccgcagggtatcttgtgctcttatcgaatgtgtatgcttctgctaaaagatggctagatgttgcttatgtgagacagaaaatggttcacgtgggcgtgaagaagcctccaggtcgaagttgggttcaaatcaatggagctgttcatggttttgtggcaggtgatagaacccataaacatgaatctttgatctatgaaatggttggcgagatcacaaggcaagcccagcaagaaggccgcgaaccagacacattaaatacgctttcccttgaagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

374

Amino Acids

41.83

Weight (kDa)

6.23

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016849)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14600
malus_domestica MD06G1197100.v1.1
prunus_persica Prupe.5G197400_v2.0.a1
pyrus_communis pycom06g17390
rosa_chinensis RchiOBHm_Chr7g0181891
rosa_laevigata RLG00000005165
rosa_multiflora Rmu_co8431917.1_g000001 Rmu_sc0021327.1_g000007
rosa_roxburghii Rroxscaffold_3G00271660
rosa_rugosa Rorug06G0444800
rosa_samantha Rh7AG047100 Rh7BG046700 Rh7CG047200
rosa_wichuraiana Rw7G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 995
Acc36I ACCTGC 1 cut(s) 995
AccII CGCG 3 cut(s) 76, 325, 1086
AcsI RAATTY 2 cut(s) 787, 817
AcvI CACGTG 1 cut(s) 937
AfaI GTAC 3 cut(s) 290, 341, 362
AgsI TTSAA 6 cut(s) 296, 403, 497, 610, 974, 1118
AjnI CCWGG 2 cut(s) 213, 955
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AluBI AGCT 8 cut(s) 167, 317, 482, 510, 704, 796, 812, 986
AluI AGCT 8 cut(s) 167, 317, 482, 510, 704, 796, 812, 986
Alw21I GWGCWC 6 cut(s) 145, 425, 512, 654, 760, 867
Alw26I GTCTC 3 cut(s) 433, 713, 913
AoxI GGCC 2 cut(s) 240, 1081
ApeKI GCWGC 3 cut(s) 34, 660, 809
ApoI RAATTY 2 cut(s) 787, 817
Asp700I GAANNNNTTC 1 cut(s) 483
AspLEI GCGC 2 cut(s) 76, 223
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 343, 1019
AsuII TTCGAA 1 cut(s) 487
AvaII GGWCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 512
BauI CACGAG 1 cut(s) 430
BbrPI CACGTG 1 cut(s) 937
Bbv12I GWGCWC 6 cut(s) 145, 425, 512, 654, 760, 867
BbvI GCAGC 3 cut(s) 21, 647, 821
BccI CCATC 2 cut(s) 62, 891
BceAI ACGGC 1 cut(s) 666
BciT130I CCWGG 2 cut(s) 215, 957
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 3 cut(s) 433, 713, 913
BfaI CTAG 4 cut(s) 224, 414, 902, 1123
BfmI CTRYAG 1 cut(s) 568
BfuAI ACCTGC 1 cut(s) 995
BisI GCNGC 6 cut(s) 35, 77, 661, 810, 849, 1084
BlpI GCTNAGC 1 cut(s) 506
BlsI GCNGC 6 cut(s) 36, 78, 662, 811, 850, 1085
Bme1390I CCNGG 3 cut(s) 59, 215, 957
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 3 cut(s) 56, 207, 735
BmrFI CCNGG 3 cut(s) 59, 215, 957
BmsI GCATC 5 cut(s) 84, 399, 450, 492, 809
BpmI CTGGAG 1 cut(s) 939
Bpu1102I GCTNAGC 1 cut(s) 506
Bpu14I TTCGAA 1 cut(s) 487
BpuEI CTTGAG 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 937
BsaJI CCNNGG 3 cut(s) 550, 641, 763
BsaWI WCCGGW 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 290, 366
BseBI CCWGG 2 cut(s) 215, 957
BseDI CCNNGG 3 cut(s) 550, 641, 763
BseGI GGATG 2 cut(s) 192, 205
BseMII CTCAG 3 cut(s) 158, 497, 783
BseNI ACTGG 2 cut(s) 290, 366
BseRI GAGGAG 3 cut(s) 25, 67, 752
BseXI GCAGC 3 cut(s) 21, 647, 821
BseYI CCCAGC 1 cut(s) 1071
Bsh1236I CGCG 3 cut(s) 76, 325, 1086
BshFI GGCC 2 cut(s) 242, 1083
BsiHKAI GWGCWC 6 cut(s) 145, 425, 512, 654, 760, 867
BsiSI CCGG 3 cut(s) 58, 98, 209
BslFI GGGAC 2 cut(s) 272, 645
BsmAI GTCTC 3 cut(s) 433, 713, 913
BsmFI GGGAC 2 cut(s) 272, 645
BsnI GGCC 2 cut(s) 242, 1083
Bsp119I TTCGAA 1 cut(s) 487
Bsp1286I GDGCHC 6 cut(s) 145, 425, 512, 654, 760, 867
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 3 cut(s) 670, 1035, 1056
Bsp1720I GCTNAGC 1 cut(s) 506
BspANI GGCC 2 cut(s) 242, 1083
BspCNI CTCAG 3 cut(s) 157, 498, 784
BspFNI CGCG 3 cut(s) 76, 325, 1086
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 3 cut(s) 56, 207, 735
BspMI ACCTGC 1 cut(s) 995
BspQI GCTCTTC 1 cut(s) 489
BspT104I TTCGAA 1 cut(s) 487
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 2 cut(s) 290, 366
BssECI CCNNGG 3 cut(s) 550, 641, 763
BssMI GATC 3 cut(s) 670, 1035, 1056
BssSI CACGAG 1 cut(s) 430
BssT1I CCWWGG 2 cut(s) 550, 641
Bst2BI CACGAG 1 cut(s) 430
Bst2UI CCWGG 2 cut(s) 215, 957
Bst4CI ACNGT 2 cut(s) 427, 826
Bst6I CTCTTC 2 cut(s) 291, 489
BstAPI GCANNNNNTGC 1 cut(s) 806
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 937
BstBI TTCGAA 1 cut(s) 487
BstC8I GCNNGC 3 cut(s) 776, 798, 1068
BstDEI CTNAG 4 cut(s) 144, 318, 506, 792
BstF5I GGATG 2 cut(s) 192, 205
BstFNI CGCG 3 cut(s) 76, 325, 1086
BstHHI GCGC 2 cut(s) 76, 223
BstKTI GATC 3 cut(s) 673, 1038, 1059
BstMAI GTCTC 3 cut(s) 433, 713, 913
BstMBI GATC 3 cut(s) 670, 1035, 1056
BstMWI GCNNNNNNNGC 5 cut(s) 140, 227, 733, 806, 1072
BstNI CCWGG 2 cut(s) 215, 957
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 3 cut(s) 57, 213, 955
BstSFI CTRYAG 1 cut(s) 568
BstUI CGCG 3 cut(s) 76, 325, 1086
BstV1I GCAGC 3 cut(s) 21, 647, 821
BsuRI GGCC 2 cut(s) 242, 1083
BtsCI GGATG 2 cut(s) 192, 205
BtsIMutI CAGTG 2 cut(s) 283, 423
BveI ACCTGC 1 cut(s) 995
Cac8I GCNNGC 3 cut(s) 776, 798, 1068
CciI TCATGA 1 cut(s) 615
CfoI GCGC 2 cut(s) 76, 223
Cfr13I GGNCC 1 cut(s) 211
CseI GACGC 2 cut(s) 628, 752
CsiI ACCWGGT 1 cut(s) 213
Csp6I GTAC 3 cut(s) 289, 340, 361
CviAII CATG 7 cut(s) 575, 616, 664, 707, 775, 992, 1025
CviQI GTAC 3 cut(s) 289, 340, 361
DdeI CTNAG 4 cut(s) 144, 318, 506, 792
DpnI GATC 3 cut(s) 672, 1037, 1058
DpnII GATC 3 cut(s) 670, 1035, 1056
DraI TTTAAA 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 291, 489
EarI CTCTTC 2 cut(s) 291, 489
EciI GGCGGA 2 cut(s) 199, 212
Ecl136II GAGCTC 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 550, 641
Eco24I GRGCYC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 510
Eco72I CACGTG 1 cut(s) 937
EcoICRI GAGCTC 1 cut(s) 510
EcoRI GAATTC 1 cut(s) 787
EcoRII CCWGG 2 cut(s) 213, 955
EcoT14I CCWWGG 2 cut(s) 550, 641
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 2 cut(s) 550, 641
FaeI CATG 7 cut(s) 578, 619, 667, 710, 778, 995, 1028
FaqI GGGAC 2 cut(s) 272, 645
FatI CATG 7 cut(s) 574, 615, 663, 706, 774, 991, 1024
FauI CCCGC 2 cut(s) 127, 464
FauNDI CATATG 1 cut(s) 357
Fnu4HI GCNGC 6 cut(s) 35, 77, 661, 810, 849, 1084
FokI GGATG 2 cut(s) 199, 212
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 6 cut(s) 35, 77, 661, 810, 849, 1084
FspBI CTAG 4 cut(s) 224, 414, 902, 1123
GlaI GCGC 2 cut(s) 75, 222
GluI GCNGC 6 cut(s) 35, 77, 661, 810, 849, 1084
GsaI CCCAGC 1 cut(s) 1075
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 2 cut(s) 242, 1083
HapII CCGG 3 cut(s) 58, 98, 209
HgaI GACGC 2 cut(s) 628, 752
HhaI GCGC 2 cut(s) 76, 223
Hin1II CATG 7 cut(s) 578, 619, 667, 710, 778, 995, 1028
Hin6I GCGC 2 cut(s) 74, 221
HinP1I GCGC 2 cut(s) 74, 221
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 633, 1028
HpaII CCGG 3 cut(s) 58, 98, 209
HphI GGTGA 2 cut(s) 343, 1019
Hpy166II GTNNAC 4 cut(s) 120, 283, 435, 934
Hpy188I TCNGA 3 cut(s) 147, 514, 793
Hpy188III TCNNGA 1 cut(s) 616
Hpy8I GTNNAC 4 cut(s) 120, 283, 435, 934
HpyAV CCTTC 5 cut(s) 187, 267, 411, 594, 1073
HpyCH4III ACNGT 2 cut(s) 427, 826
HpyCH4IV ACGT 2 cut(s) 291, 936
HpyCH4V TGCA 7 cut(s) 159, 347, 663, 774, 800, 809, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 227, 733, 806, 1072
HpyF3I CTNAG 4 cut(s) 144, 318, 506, 792
HpySE526I ACGT 2 cut(s) 291, 936
Hsp92II CATG 7 cut(s) 578, 619, 667, 710, 778, 995, 1028
HspAI GCGC 2 cut(s) 74, 221
Kzo9I GATC 3 cut(s) 670, 1035, 1056
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 4 cut(s) 54, 420, 733, 983
Lsp1109I GCAGC 3 cut(s) 21, 647, 821
LweI GCATC 5 cut(s) 84, 399, 450, 492, 809
MabI ACCWGGT 1 cut(s) 213
MaeI CTAG 4 cut(s) 224, 414, 902, 1123
MaeII ACGT 2 cut(s) 291, 936
MaeIII GTNAC 1 cut(s) 331
MalI GATC 3 cut(s) 672, 1037, 1058
MboI GATC 3 cut(s) 670, 1035, 1056
MboII GAAGA 3 cut(s) 308, 476, 958
MfeI CAATTG 1 cut(s) 497
MhlI GDGCHC 6 cut(s) 145, 425, 512, 654, 760, 867
MluCI AATT 5 cut(s) 252, 497, 540, 787, 817
MlyI GAGTC 1 cut(s) 627
MmeI TCCRAC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 4 cut(s) 677, 695, 821, 1100
MslI CAYNNNNRTG 2 cut(s) 356, 1023
MspI CCGG 3 cut(s) 58, 98, 209
MspR9I CCNGG 3 cut(s) 59, 215, 957
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 2 cut(s) 215, 957
MvnI CGCG 3 cut(s) 76, 325, 1086
MwoI GCNNNNNNNGC 5 cut(s) 140, 227, 733, 806, 1072
NciI CCSGG 1 cut(s) 59
NdeI CATATG 1 cut(s) 357
NdeII GATC 3 cut(s) 670, 1035, 1056
NlaIII CATG 7 cut(s) 578, 619, 667, 710, 778, 995, 1028
NlaIV GGNNCC 3 cut(s) 56, 207, 735
NmeAIII GCCGAG 1 cut(s) 744
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 778
NspV TTCGAA 1 cut(s) 487
PaeI GCATGC 1 cut(s) 778
PagI TCATGA 1 cut(s) 615
PaqCI CACCTGC 1 cut(s) 995
PciSI GCTCTTC 1 cut(s) 489
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 1028
PkrI GCNGC 6 cut(s) 36, 78, 662, 811, 850, 1085
PleI GAGTC 1 cut(s) 627
PmaCI CACGTG 1 cut(s) 937
PmlI CACGTG 1 cut(s) 937
PpsI GAGTC 1 cut(s) 627
Ppu21I YACGTR 1 cut(s) 937
Psp124BI GAGCTC 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 213, 955
PspCI CACGTG 1 cut(s) 937
PspFI CCCAGC 1 cut(s) 1071
PspGI CCWGG 2 cut(s) 213, 955
PspN4I GGNNCC 3 cut(s) 56, 207, 735
PspPI GGNCC 1 cut(s) 211
PsrI GAACNNNNNNTAC 2 cut(s) 383, 415
RsaI GTAC 3 cut(s) 290, 341, 362
RsaNI GTAC 3 cut(s) 289, 340, 361
RseI CAYNNNNRTG 2 cut(s) 356, 1023
SacI GAGCTC 1 cut(s) 512
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 4 cut(s) 677, 695, 821, 1100
SatI GCNGC 6 cut(s) 35, 77, 661, 810, 849, 1084
Sau3AI GATC 3 cut(s) 670, 1035, 1056
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 1 cut(s) 627
ScrFI CCNGG 3 cut(s) 59, 215, 957
SduI GDGCHC 6 cut(s) 145, 425, 512, 654, 760, 867
SexAI ACCWGGT 1 cut(s) 213
SfaNI GCATC 5 cut(s) 84, 399, 450, 492, 809
SfcI CTRYAG 1 cut(s) 568
SfuI TTCGAA 1 cut(s) 487
SinI GGWCC 1 cut(s) 211
SmiMI CAYNNNNRTG 2 cut(s) 356, 1023
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SphI GCATGC 1 cut(s) 778
Sse9I AATT 5 cut(s) 252, 497, 540, 787, 817
SspI AATATT 1 cut(s) 492
SspMI CTAG 4 cut(s) 224, 414, 902, 1123
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 3 cut(s) 57, 213, 955
StyI CCWWGG 2 cut(s) 550, 641
TaaI ACNGT 2 cut(s) 427, 826
TaiI ACGT 2 cut(s) 294, 939
TaqI TCGA 5 cut(s) 487, 636, 669, 872, 961
TasI AATT 5 cut(s) 252, 497, 540, 787, 817
TatI WGTACW 1 cut(s) 339
TauI GCSGC 3 cut(s) 79, 851, 1086
TfiI GAWTC 1 cut(s) 1028
Tru1I TTAA 4 cut(s) 677, 695, 821, 1100
Tru9I TTAA 4 cut(s) 677, 695, 821, 1100
TscAI CASTG 2 cut(s) 290, 430
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 34, 660, 809
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 7 cut(s) 399, 552, 604, 714, 980, 1041, 1056
TspRI CASTG 2 cut(s) 290, 430
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 2 cut(s) 787, 817
XceI RCATGY 1 cut(s) 778
XcmI CCANNNNNNNNNTGG 2 cut(s) 373, 963
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 4 cut(s) 224, 414, 902, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.