RLG00000005165

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016849
Physical Location & Seq
Reverse (-)
65570714 .. 65576243
5530 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005165

Sequence Viewer

Length: 2595 bp
ATGGATTCACCCAGAAAAATAATCAGAGGGTATGCTGGTAGCGAAACTCCGGGGAAGGCGGTTGAGTTGTATAACAGGCTGGCGGCGACGGAAGCCGAGCCGGATGGGTATACGTATTCGTATGTTGTTAGTGCTTGTGCTAGGTCAGGGATGGTTAGAGAGGGGGAACAGTTGCATGGGAGAGTTTTGGGTGGTGGGTTTGGTTCTAATGTGTTTGTTCAGACCAGTTTGGTTAGTTTGTATGCAGGTGGTGGAGGGTTGAGTGATGGTGTTGAGTGCGCGCTTAAGGTGTTTGATGAAATGCGGGAGAGGAGTGTTGTCAGTTGGAATACGCTGCTTTCGGGGTATGTGAGGAGCCGGGATTTTGATGCGGCGTGGCGAGTTTTTGATGAGATGCCGGAGAGGAATGTGGTGTCGTGGACGACAATGATTGCGGGGTGTGCTCAGAATGGGAGGTGTAAGGAAGCTTTGAGTTTGTTTGGGCGGATGAGGAAGGCGGATGTGGAACCGGACCAGGTTGCGCTAGTGGCGGTGTTATCGGCCTGTGCTGAGATTGGGGACTTGAGATTGGGAAGGTGGGTTCACTGGTACGTTGAAGAGAGATTGTGTGTTAGAGCTAAGTCGAGGTTGGTGACTGTGTACAATGCACTCATACATATGTACGCCAGTTGTGGTTTGGTTGATGAAGCGTATAAGGTGTTCAAACAGATGCCTAGAAGGAGCACTGTCTCGTGGACCAGCATTATAGTTGGGTTCGCAAAGCAGGGTCGCGGGGAGGAAGCTCTTCGTATATTTCAGTTGATGCTAAGCTCGGGACTTGATGATGTAAGACCTGATAAAATAACTTTCCTTGGGGTGTTGTGTGCTTGTAGCCATGCTGGATTAGTTGATGAGGGCAGAAGGCTTTTCAAGTTTATGACGCAGACTTGGGGAATCGAACCAAGGATTGAGCACTATGGCTGCATGGTCGACCTATTAAGCCGTGCTGGTTTTCTAAACGAAGCTCATGTACTTGTGGAGACTATGCCAATGGAGCCAAACGACGCTGTGTGGGGTGCTCTTCTTGGTGGTTGCATGCTTCACAAGAATTCTGAGCTTGCATCACTTGTATCTCAAAAATTAACAGTTGCACTTGACCCTGACCAAGCTGCAGGGTATCTTGTGCTCTTATCAAATGTCTATGCTTCTGCTAAAAGATGGCTAGATGTTGCTTATGTGAGACAGAAAATGGTTCAGATGGGCGTGAAGAAGCCCCCAGGCCGAAGTTGGGTTCAAATCAATGGAGCTGTTCATGGTTTTGTGGCAGGTGATAGGACCCATAAACATGAATCTTTGATCTATGAAATGGTAGGACAATACCTCGCTGCCCAGCTACGGGCAGCCCTTCCTAACCAAGGCTGTGTGACTCACTCTGGAAGTAGCTCTGAATGGAGGCCTGTTGTGATCCGCAAACAGGGCCTCTACAAGTACCCTACTGTGAGATTGCACATACAAACTGCAGTATGCGGGGACATTGCAATCTACGCCACAGATATATATCAAAGAGACCCCTCTGGCACCGAGCAAAGGCTAGTCTTCTCTAAATTTGATGCTTCAGAACTCGGTGCCTTGTTCACCCGAGGGATGTTTATGGATGTGTTCTTCTCTTTGGATCCATATGACTATCAGCAGAGTGCAGGCATTAGATCTTTATTTTTATCAGAACTAGTAATTTCGGTTGGCTCAGCTGTGAAGGTTGTGGATGCTCTCAATGAAGAGTGGTCTTCAATTGATATTATACTTGCTGCAGTTGACCTCCCAATAGAATCAAGCATTGAGATGCTGAAGTGTATCATGCAAGATAGACATTTCAAATGTATTCCAGTGATCATGCAGTCAACAAACCATGAGTCCTCTTTTCTTCTCAATTTCTTAAGATTGGGGGCAACTGATTACCTGGTCAAGCCATTATGCATCGATGAGATACTGAACTTGTGGATGCACTGCTGGAGGCAGCTTAAGGAACTTGACTGGTTGCCACAGAACAACTTCCAAACTTCGAGTGATGACAGCAGCAATATCTTCGTCTATAATGACACAGACGAAGAATTCCTAGAGAATACGATGCAAACATCACAGAGCAAAACTGGGGATACTGATTCACAGGCATTAGGGTTAATATACATGGAACATAAGAACATAAGACTATTCAAGTTCATGAACCAGACTTGGGGAATCGAACCAAGGATTGAGCACTATGGCTGCATGGTCGACCTATTAAGCCGTGCTGGTTTACTAAACGAAGCTCATGTACTTGTGGAGACTATGCCAATGGATCCAAACGACGCTGTGTGGGGTGCTCTCCTTGGCGGTGGCATGCTTCACAAGAATTCTGAGCTTGCATCACTTGTATCTCAAAAATTAACAGTTGCACTTGACCCTGACCGAGCTGCAGGGTATCTTGTGCTCTTATCAAATGTCTATGCTTCTGCTAAAAGATGGCTAGATGTTGCTTATGTGAGACAGAAAATGGTTCAGATGGGCGTGAATCAAGAAGCCTCCAGGTCGAAGTTGGGTTCAAATCAATGGAGCTGTTCATGGTTTTGTGGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

865

Amino Acids

96.52

Weight (kDa)

6.07

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 105 - 137 2.2e-09 PPR repeat family
PPR PF01535 107 - 137 1.3e-07 PPR repeat
PPR_2 PF13041 135 - 183 4.1e-10 PPR repeat family
PPR PF01535 138 - 167 7.4e-09 PPR repeat
PPR_2 PF13041 211 - 241 8.3e-06 PPR repeat family
PPR PF01535 213 - 240 6.6e-07 PPR repeat
PPR_1 PF12854 213 - 237 3.2e-06 PPR repeat
PPR_2 PF13041 241 - 291 1.3e-06 PPR repeat family
PPR PF01535 243 - 273 1.3e-06 PPR repeat
E_motif PF20431 361 - 425 1.8e-14 E motif
Response_reg PF00072 572 - 657 6.8e-07 Response regulator receiver domain
E_motif PF20431 788 - 843 2.1e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016849)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14600
malus_domestica MD06G1197100.v1.1
prunus_persica Prupe.5G197400_v2.0.a1
pyrus_communis pycom06g17390
rosa_chinensis RchiOBHm_Chr7g0181891
rosa_laevigata RLG00000005165
rosa_multiflora Rmu_co8431917.1_g000001 Rmu_sc0021327.1_g000007
rosa_roxburghii Rroxscaffold_3G00271660
rosa_rugosa Rorug06G0444800
rosa_samantha Rh7AG047100 Rh7BG046700 Rh7CG047200
rosa_wichuraiana Rw7G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 236, 1295, 2580
Acc36I ACCTGC 3 cut(s) 236, 1295, 2580
AccB1I GGYRCC 2 cut(s) 1556, 1604
AccI GTMKAC 3 cut(s) 110, 969, 2250
AccII CGCG 2 cut(s) 281, 771
AclWI GGATC 5 cut(s) 1438, 1646, 1659, 2309, 2322
AcsI RAATTY 4 cut(s) 1087, 1583, 2087, 2368
AcuI CTGAAG 2 cut(s) 1578, 1844
AfaI GTAC 6 cut(s) 590, 641, 662, 1011, 1469, 2292
AfiI CCNNNNNNNGG 7 cut(s) 1267, 1374, 1375, 1394, 1453, 1566, 2209
AflII CTTAAG 3 cut(s) 284, 1912, 1997
AgsI TTSAA 8 cut(s) 596, 703, 910, 1274, 1767, 1852, 2191, 2559
AhlI ACTAGT 1 cut(s) 1705
AjnI CCWGG 4 cut(s) 513, 1255, 1935, 2540
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
Alw21I GWGCWC 8 cut(s) 445, 725, 954, 1060, 1167, 2235, 2341, 2448
Alw26I GTCTC 6 cut(s) 733, 1013, 1213, 1539, 2294, 2494
AlwI GGATC 5 cut(s) 1438, 1646, 1659, 2309, 2322
Ama87I CYCGRG 2 cut(s) 811, 1617
AoxI GGCC 4 cut(s) 540, 1258, 1433, 1456
ApoI RAATTY 4 cut(s) 1087, 1583, 2087, 2368
ArsI GACNNNNNNTTYG 2 cut(s) 1874, 1906
Asp700I GAANNNNTTC 2 cut(s) 783, 2027
AspLEI GCGC 3 cut(s) 281, 283, 523
AspS9I GGNCC 4 cut(s) 511, 735, 1314, 1456
AsuC2I CCSGG 2 cut(s) 51, 359
AsuHPI GGTGA 3 cut(s) 643, 1319, 1606
AvaI CYCGRG 2 cut(s) 811, 1617
AvaII GGWCC 3 cut(s) 511, 735, 1314
BamHI GGATCC 2 cut(s) 1651, 2314
BanI GGYRCC 2 cut(s) 1556, 1604
BarI GAAGNNNNNNTAC 4 cut(s) 993, 1025, 2274, 2306
BauI CACGAG 1 cut(s) 730
BbsI GAAGAC 2 cut(s) 1567, 1755
Bbv12I GWGCWC 8 cut(s) 445, 725, 954, 1060, 1167, 2235, 2341, 2448
BccI CCATC 7 cut(s) 98, 145, 260, 1191, 1231, 2472, 2512
BceAI ACGGC 2 cut(s) 966, 2247
BcgI CGANNNNNNTGC 2 cut(s) 2044, 2078
BciT130I CCWGG 4 cut(s) 515, 1257, 1937, 2542
BciVI GTATCC 1 cut(s) 2125
BclI TGATCA 1 cut(s) 1866
BcnI CCSGG 2 cut(s) 51, 359
BcoDI GTCTC 6 cut(s) 733, 1013, 1213, 1539, 2294, 2494
BcuI ACTAGT 1 cut(s) 1705
BfaI CTAG 8 cut(s) 141, 524, 714, 1202, 1571, 1706, 2093, 2483
BfmI CTRYAG 4 cut(s) 1149, 1497, 1785, 2430
BfrI CTTAAG 3 cut(s) 284, 1912, 1997
BfuAI ACCTGC 3 cut(s) 236, 1295, 2580
BfuI GTATCC 1 cut(s) 2125
BglII AGATCT 1 cut(s) 1685
BlpI GCTNAGC 2 cut(s) 806, 1723
Bme1390I CCNGG 6 cut(s) 51, 359, 515, 1257, 1937, 2542
Bme18I GGWCC 3 cut(s) 511, 735, 1314
BmeT110I CYCGRG 2 cut(s) 811, 1617
BmgT120I GGNCC 4 cut(s) 511, 735, 1314, 1456
BmiI GGNNCC 8 cut(s) 356, 507, 1035, 1316, 1558, 1606, 1653, 2316
BmrFI CCNGG 6 cut(s) 51, 359, 515, 1257, 1937, 2542
BmrI ACTGGG 1 cut(s) 2136
BmuI ACTGGG 1 cut(s) 2136
BpiI GAAGAC 2 cut(s) 1567, 1755
BpmI CTGGAG 2 cut(s) 2008, 2524
Bpu1102I GCTNAGC 2 cut(s) 806, 1723
BpuEI CTTGAG 1 cut(s) 583
BpuMI CCSGG 2 cut(s) 51, 359
Bsa29I ATCGAT 1 cut(s) 1956
BsaAI YACGTR 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 1536
BsaI GGTCTC 1 cut(s) 1539
BsaJI CCNNGG 8 cut(s) 50, 850, 941, 1255, 1393, 1618, 2222, 2344
BsaWI WCCGGW 1 cut(s) 508
Bsc4I CCNNNNNNNGG 7 cut(s) 1267, 1374, 1375, 1394, 1453, 1566, 2209
Bse1I ACTGG 6 cut(s) 225, 590, 666, 1862, 2015, 2131
Bse3DI GCAATG 1 cut(s) 1512
Bse8I GATNNNNATC 1 cut(s) 1536
BseBI CCWGG 4 cut(s) 515, 1257, 1937, 2542
BseCI ATCGAT 1 cut(s) 1956
BseDI CCNNGG 8 cut(s) 50, 850, 941, 1255, 1393, 1618, 2222, 2344
BseGI GGATG 8 cut(s) 109, 156, 492, 505, 1629, 1639, 1747, 1983
BseJI GATNNNNATC 1 cut(s) 1536
BseLI CCNNNNNNNGG 7 cut(s) 1267, 1374, 1375, 1394, 1453, 1566, 2209
BseMI GCAATG 1 cut(s) 1512
BseMII CTCAG 5 cut(s) 458, 540, 1083, 1737, 2364
BseNI ACTGG 6 cut(s) 225, 590, 666, 1862, 2015, 2131
BsePI GCGCGC 1 cut(s) 279
BseRI GAGGAG 2 cut(s) 325, 367
BseYI CCCAGC 1 cut(s) 1368
BsgI GTGCAG 1 cut(s) 1695
Bsh1236I CGCG 2 cut(s) 281, 771
BshFI GGCC 4 cut(s) 542, 1260, 1435, 1458
BshNI GGYRCC 2 cut(s) 1556, 1604
BshVI ATCGAT 1 cut(s) 1956
BsiHKAI GWGCWC 8 cut(s) 445, 725, 954, 1060, 1167, 2235, 2341, 2448
BsiHKCI CYCGRG 2 cut(s) 811, 1617
BsiSI CCGG 5 cut(s) 50, 101, 358, 398, 509
BslFI GGGAC 3 cut(s) 572, 828, 1523
BslI CCNNNNNNNGG 7 cut(s) 1267, 1374, 1375, 1394, 1453, 1566, 2209
BsmAI GTCTC 6 cut(s) 733, 1013, 1213, 1539, 2294, 2494
BsmFI GGGAC 3 cut(s) 572, 828, 1523
BsnI GGCC 4 cut(s) 542, 1260, 1435, 1458
Bso31I GGTCTC 1 cut(s) 1539
BsoBI CYCGRG 2 cut(s) 811, 1617
Bsp1286I GDGCHC 8 cut(s) 445, 725, 954, 1060, 1167, 2235, 2341, 2448
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 6 cut(s) 1335, 1443, 1651, 1685, 1866, 2314
Bsp1720I GCTNAGC 2 cut(s) 806, 1723
BspANI GGCC 4 cut(s) 542, 1260, 1435, 1458
BspCNI CTCAG 5 cut(s) 457, 541, 1084, 1736, 2365
BspDI ATCGAT 1 cut(s) 1956
BspFNI CGCG 2 cut(s) 281, 771
BspHI TCATGA 1 cut(s) 2196
BspLI GGNNCC 8 cut(s) 356, 507, 1035, 1316, 1558, 1606, 1653, 2316
BspMAI CTGCAG 4 cut(s) 1153, 1501, 1789, 2434
BspMI ACCTGC 3 cut(s) 236, 1295, 2580
BspPI GGATC 5 cut(s) 1438, 1646, 1659, 2309, 2322
BspQI GCTCTTC 2 cut(s) 789, 1065
BspT107I GGYRCC 2 cut(s) 1556, 1604
BspTI CTTAAG 3 cut(s) 284, 1912, 1997
BspTNI GGTCTC 1 cut(s) 1539
BsrDI GCAATG 1 cut(s) 1512
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 6 cut(s) 225, 590, 666, 1862, 2015, 2131
BssECI CCNNGG 8 cut(s) 50, 850, 941, 1255, 1393, 1618, 2222, 2344
BssHII GCGCGC 1 cut(s) 279
BssMI GATC 6 cut(s) 1335, 1443, 1651, 1685, 1866, 2314
BssNAI GTATAC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 730
BssT1I CCWWGG 5 cut(s) 850, 941, 1393, 2222, 2344
Bst1107I GTATAC 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 730
Bst2UI CCWGG 4 cut(s) 515, 1257, 1937, 2542
Bst4CI ACNGT 6 cut(s) 171, 637, 727, 1126, 1477, 2407
Bst6I CTCTTC 4 cut(s) 591, 789, 1065, 1749
BstAFI CTTAAG 3 cut(s) 284, 1912, 1997
BstAUI TGTACA 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 114
BstC8I GCNNGC 7 cut(s) 81, 281, 1076, 1098, 1678, 2357, 2379
BstDEI CTNAG 7 cut(s) 444, 549, 618, 806, 1092, 1723, 2373
BstENI CCTNNNNNAGG 1 cut(s) 1392
BstF5I GGATG 8 cut(s) 109, 156, 492, 505, 1629, 1639, 1747, 1983
BstFNI CGCG 2 cut(s) 281, 771
BstHHI GCGC 3 cut(s) 281, 283, 523
BstKTI GATC 6 cut(s) 1338, 1446, 1654, 1688, 1869, 2317
BstMAI GTCTC 6 cut(s) 733, 1013, 1213, 1539, 2294, 2494
BstMBI GATC 6 cut(s) 1335, 1443, 1651, 1685, 1866, 2314
BstMWI GCNNNNNNNGC 6 cut(s) 92, 440, 527, 1033, 1455, 1523
BstNI CCWGG 4 cut(s) 515, 1257, 1937, 2542
BstNSI RCATGY 2 cut(s) 1078, 2359
BstSCI CCNGG 6 cut(s) 49, 357, 513, 1255, 1935, 2540
BstSFI CTRYAG 4 cut(s) 1149, 1497, 1785, 2430
BstSNI TACGTA 1 cut(s) 114
BstUI CGCG 2 cut(s) 281, 771
BstV2I GAAGAC 2 cut(s) 1567, 1755
BstX2I RGATCY 3 cut(s) 1651, 1685, 2314
BstYI RGATCY 3 cut(s) 1651, 1685, 2314
BstZ17I GTATAC 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 1956
BsuI GTATCC 1 cut(s) 2125
BsuRI GGCC 4 cut(s) 542, 1260, 1435, 1458
BsuTUI ATCGAT 1 cut(s) 1956
BtsCI GGATG 8 cut(s) 109, 156, 492, 505, 1629, 1639, 1747, 1983
BtsI GCAGTG 1 cut(s) 1981
BtsIMutI CAGTG 4 cut(s) 583, 723, 1869, 1981
BveI ACCTGC 3 cut(s) 236, 1295, 2580
Cac8I GCNNGC 7 cut(s) 81, 281, 1076, 1098, 1678, 2357, 2379
CciI TCATGA 1 cut(s) 2196
CfoI GCGC 3 cut(s) 281, 283, 523
Cfr13I GGNCC 4 cut(s) 511, 735, 1314, 1456
ClaI ATCGAT 1 cut(s) 1956
CseI GACGC 3 cut(s) 928, 1052, 2333
CsiI ACCWGGT 2 cut(s) 513, 1935
Csp6I GTAC 6 cut(s) 589, 640, 661, 1010, 1468, 2291
CviQI GTAC 6 cut(s) 589, 640, 661, 1010, 1468, 2291
DdeI CTNAG 7 cut(s) 444, 549, 618, 806, 1092, 1723, 2373
DpnI GATC 6 cut(s) 1337, 1445, 1653, 1687, 1868, 2316
DpnII GATC 6 cut(s) 1335, 1443, 1651, 1685, 1866, 2314
Eam1104I CTCTTC 4 cut(s) 591, 789, 1065, 1749
EarI CTCTTC 4 cut(s) 591, 789, 1065, 1749
EciI GGCGGA 2 cut(s) 499, 512
Eco105I TACGTA 1 cut(s) 114
Eco130I CCWWGG 5 cut(s) 850, 941, 1393, 2222, 2344
Eco147I AGGCCT 1 cut(s) 1435
Eco31I GGTCTC 1 cut(s) 1539
Eco47I GGWCC 3 cut(s) 511, 735, 1314
Eco57I CTGAAG 2 cut(s) 1578, 1844
Eco88I CYCGRG 2 cut(s) 811, 1617
EcoNI CCTNNNNNAGG 1 cut(s) 1392
EcoO109I RGGNCCY 2 cut(s) 1314, 1456
EcoRI GAATTC 3 cut(s) 1087, 2087, 2368
EcoRII CCWGG 4 cut(s) 513, 1255, 1935, 2540
EcoT14I CCWWGG 5 cut(s) 850, 941, 1393, 2222, 2344
EcoT22I ATGCAT 1 cut(s) 1955
ErhI CCWWGG 5 cut(s) 850, 941, 1393, 2222, 2344
FaqI GGGAC 3 cut(s) 572, 828, 1523
FauI CCCGC 4 cut(s) 297, 427, 764, 1499
FauNDI CATATG 2 cut(s) 657, 1657
FbaI TGATCA 1 cut(s) 1866
FblI GTMKAC 3 cut(s) 110, 969, 2250
FokI GGATG 8 cut(s) 116, 163, 499, 512, 1636, 1646, 1754, 1990
FspBI CTAG 8 cut(s) 141, 524, 714, 1202, 1571, 1706, 2093, 2483
GlaI GCGC 3 cut(s) 280, 282, 522
GsaI CCCAGC 1 cut(s) 1372
GsuI CTGGAG 2 cut(s) 2008, 2524
HaeIII GGCC 4 cut(s) 542, 1260, 1435, 1458
HapII CCGG 5 cut(s) 50, 101, 358, 398, 509
HgaI GACGC 3 cut(s) 928, 1052, 2333
HhaI GCGC 3 cut(s) 281, 283, 523
Hin6I GCGC 3 cut(s) 279, 281, 521
HinP1I GCGC 3 cut(s) 279, 281, 521
HincII GTYRAC 4 cut(s) 970, 1792, 1878, 2251
HindII GTYRAC 4 cut(s) 970, 1792, 1878, 2251
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 9 cut(s) 5, 933, 1328, 1405, 1805, 1889, 2138, 2214, 2527
HpaII CCGG 5 cut(s) 50, 101, 358, 398, 509
HphI GGTGA 3 cut(s) 643, 1319, 1606
Hpy188III TCNNGA 4 cut(s) 813, 1413, 2197, 2531
Hpy99I CGWCG 3 cut(s) 91, 1046, 2327
HpyAV CCTTC 7 cut(s) 49, 487, 567, 711, 894, 1394, 1726
HpyCH4III ACNGT 6 cut(s) 171, 637, 727, 1126, 1477, 2407
HpyCH4IV ACGT 2 cut(s) 113, 591
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 440, 527, 1033, 1455, 1523
HpyF3I CTNAG 7 cut(s) 444, 549, 618, 806, 1092, 1723, 2373
HpySE526I ACGT 2 cut(s) 113, 591
HspAI GCGC 3 cut(s) 279, 281, 521
Ksp22I TGATCA 1 cut(s) 1866
Kzo9I GATC 6 cut(s) 1335, 1443, 1651, 1685, 1866, 2314
LguI GCTCTTC 2 cut(s) 789, 1065
LmnI GCTCC 5 cut(s) 354, 720, 1033, 1283, 2568
MabI ACCWGGT 2 cut(s) 513, 1935
MaeI CTAG 8 cut(s) 141, 524, 714, 1202, 1571, 1706, 2093, 2483
MaeII ACGT 2 cut(s) 113, 591
MaeIII GTNAC 2 cut(s) 631, 1402
MalI GATC 6 cut(s) 1337, 1445, 1653, 1687, 1868, 2316
MboI GATC 6 cut(s) 1335, 1443, 1651, 1685, 1866, 2314
MfeI CAATTG 1 cut(s) 1767
MflI RGATCY 3 cut(s) 1651, 1685, 2314
MhlI GDGCHC 8 cut(s) 445, 725, 954, 1060, 1167, 2235, 2341, 2448
MluCI AATT 9 cut(s) 1087, 1118, 1583, 1710, 1767, 1906, 2087, 2368, 2399
MlyI GAGTC 2 cut(s) 1399, 1898
MmeI TCCRAC 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 1955
MroXI GAANNNNTTC 2 cut(s) 783, 2027
MseI TTAA 8 cut(s) 285, 977, 1121, 1913, 1998, 2156, 2258, 2402
MslI CAYNNNNRTG 3 cut(s) 656, 1323, 1817
MspA1I CMGCKG 1 cut(s) 1727
MspCI CTTAAG 3 cut(s) 284, 1912, 1997
MspI CCGG 5 cut(s) 50, 101, 358, 398, 509
MspR9I CCNGG 6 cut(s) 51, 359, 515, 1257, 1937, 2542
MunI CAATTG 1 cut(s) 1767
MvaI CCWGG 4 cut(s) 515, 1257, 1937, 2542
MvnI CGCG 2 cut(s) 281, 771
MwoI GCNNNNNNNGC 6 cut(s) 92, 440, 527, 1033, 1455, 1523
NciI CCSGG 2 cut(s) 51, 359
NdeI CATATG 2 cut(s) 657, 1657
NdeII GATC 6 cut(s) 1335, 1443, 1651, 1685, 1866, 2314
NlaIV GGNNCC 8 cut(s) 356, 507, 1035, 1316, 1558, 1606, 1653, 2316
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 631, 1402
NsiI ATGCAT 1 cut(s) 1955
NspI RCATGY 2 cut(s) 1078, 2359
PaeI GCATGC 2 cut(s) 1078, 2359
PagI TCATGA 1 cut(s) 2196
PaqCI CACCTGC 3 cut(s) 236, 1295, 2580
PauI GCGCGC 1 cut(s) 279
PceI AGGCCT 1 cut(s) 1435
PciSI GCTCTTC 2 cut(s) 789, 1065
PdmI GAANNNNTTC 2 cut(s) 783, 2027
PfeI GAWTC 7 cut(s) 5, 933, 1328, 1805, 2138, 2214, 2527
PleI GAGTC 2 cut(s) 1399, 1897
PpsI GAGTC 2 cut(s) 1399, 1897
Ppu21I YACGTR 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 1314
Psp5II RGGWCCY 1 cut(s) 1314
Psp6I CCWGG 4 cut(s) 513, 1255, 1935, 2540
PspFI CCCAGC 1 cut(s) 1368
PspGI CCWGG 4 cut(s) 513, 1255, 1935, 2540
PspN4I GGNNCC 8 cut(s) 356, 507, 1035, 1316, 1558, 1606, 1653, 2316
PspPI GGNCC 4 cut(s) 511, 735, 1314, 1456
PspPPI RGGWCCY 1 cut(s) 1314
PsrI GAACNNNNNNTAC 2 cut(s) 683, 715
PstI CTGCAG 4 cut(s) 1153, 1501, 1789, 2434
PsuI RGATCY 3 cut(s) 1651, 1685, 2314
PteI GCGCGC 1 cut(s) 279
PvuII CAGCTG 1 cut(s) 1727
RsaI GTAC 6 cut(s) 590, 641, 662, 1011, 1469, 2292
RsaNI GTAC 6 cut(s) 589, 640, 661, 1010, 1468, 2291
RseI CAYNNNNRTG 3 cut(s) 656, 1323, 1817
SalI GTCGAC 2 cut(s) 968, 2249
SapI GCTCTTC 2 cut(s) 789, 1065
SaqAI TTAA 8 cut(s) 285, 977, 1121, 1913, 1998, 2156, 2258, 2402
Sau3AI GATC 6 cut(s) 1335, 1443, 1651, 1685, 1866, 2314
Sau96I GGNCC 4 cut(s) 511, 735, 1314, 1456
SchI GAGTC 2 cut(s) 1399, 1898
ScrFI CCNGG 6 cut(s) 51, 359, 515, 1257, 1937, 2542
SduI GDGCHC 8 cut(s) 445, 725, 954, 1060, 1167, 2235, 2341, 2448
SexAI ACCWGGT 2 cut(s) 513, 1935
SfcI CTRYAG 4 cut(s) 1149, 1497, 1785, 2430
SinI GGWCC 3 cut(s) 511, 735, 1314
SmiMI CAYNNNNRTG 3 cut(s) 656, 1323, 1817
SmlI CTYRAG 4 cut(s) 284, 562, 1912, 1997
SmoI CTYRAG 4 cut(s) 284, 562, 1912, 1997
SnaBI TACGTA 1 cut(s) 114
SpeI ACTAGT 1 cut(s) 1705
SphI GCATGC 2 cut(s) 1078, 2359
Sse9I AATT 9 cut(s) 1087, 1118, 1583, 1710, 1767, 1906, 2087, 2368, 2399
SseBI AGGCCT 1 cut(s) 1435
SspMI CTAG 8 cut(s) 141, 524, 714, 1202, 1571, 1706, 2093, 2483
StuI AGGCCT 1 cut(s) 1435
StyD4I CCNGG 6 cut(s) 49, 357, 513, 1255, 1935, 2540
StyI CCWWGG 5 cut(s) 850, 941, 1393, 2222, 2344
TaaI ACNGT 6 cut(s) 171, 637, 727, 1126, 1477, 2407
TaiI ACGT 2 cut(s) 116, 594
TaqI TCGA 8 cut(s) 623, 936, 969, 1956, 2039, 2217, 2250, 2546
TaqII GACCGA 1 cut(s) 2439
TasI AATT 9 cut(s) 1087, 1118, 1583, 1710, 1767, 1906, 2087, 2368, 2399
TatI WGTACW 3 cut(s) 639, 1009, 2290
TauI GCSGC 2 cut(s) 86, 374
TfiI GAWTC 7 cut(s) 5, 933, 1328, 1805, 2138, 2214, 2527
Tru1I TTAA 8 cut(s) 285, 977, 1121, 1913, 1998, 2156, 2258, 2402
Tru9I TTAA 8 cut(s) 285, 977, 1121, 1913, 1998, 2156, 2258, 2402
TscAI CASTG 4 cut(s) 590, 730, 1869, 1988
TseFI GTSAC 2 cut(s) 631, 1402
Tsp45I GTSAC 2 cut(s) 631, 1402
TspDTI ATGAA 9 cut(s) 312, 699, 1280, 1341, 1356, 1767, 2185, 2213, 2565
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 4 cut(s) 590, 730, 1869, 1988
Vha464I CTTAAG 3 cut(s) 284, 1912, 1997
VpaK11BI GGWCC 3 cut(s) 511, 735, 1314
XagI CCTNNNNNAGG 1 cut(s) 1392
XapI RAATTY 4 cut(s) 1087, 1583, 2087, 2368
XceI RCATGY 2 cut(s) 1078, 2359
XcmI CCANNNNNNNNNTGG 3 cut(s) 673, 1263, 2548
XmiI GTMKAC 3 cut(s) 110, 969, 2250
XmnI GAANNNNTTC 2 cut(s) 783, 2027
XspI CTAG 8 cut(s) 141, 524, 714, 1202, 1571, 1706, 2093, 2483
Zsp2I ATGCAT 1 cut(s) 1955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.