Rw7G003900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016849
Physical Location & Seq
Forward (+)
3170370 .. 3172040
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G003900.1

Sequence Viewer

Length: 1671 bp
ATGGATTTGAAAAGTATAGTTTGCGATTTAAAGGACTACCTTAAACCCCCAACCTCCTCCTCTAGAGCTTTAGAGCAGCGCCTCTTTCATCTATTACAGAGCTGCAACACACTCCGAAATCTGACCCAAATTCATACACAGGTAGTAGTCCATGGATTCACCCAGAAAAGCTATATTCTTTCTAAGGTACTAGCGTTGTATGTAGGTTGTGGGTGTCTTGATAATGCGCTGAGAGTTTTCGGGAATGTGAAGAGTCCGAGTACTACTGTGTGGAACCAGATAATCAGAGGGTATGCTGGCAGCGAAACTCCGGGGAAGGCGGTTGAGTTGTATAACAGGCTGGCGGCGACGGAAGCCGAGCCGGATGGGTATACGTATTCGTATGTTGTTAGTGCTTGCGCTAGGTCAGGGATGGTTAGAGAGGGGGAGCAGTTGCATGGGAGAGTTTTGGGTGGTGGGTTTGGTTCTAATGTGTTTGTTCAGACCAGTTTGGTTAGTTTGTATGCAGGTGGTGGTGTTGAGTGCGCGCGCAAGGTGTTTGATGAAATGCGTGAGAGGAGTGTTGTCAGTTGGAATACGCTGCTTTCGGGGTATGTGAGGAGCCGGGATTTTGATGGGGCGCGGCGAGTTTTTGATGAGATGCCGGAGAGGAATGTGGTGTCGTGGACGACAATGATTGCGGGGTGTGCTCAGAATGGGAGGTGTAGGGAAGCTTTGAGTTTGTTTGGGCGGATGAGGAAGGCGGATGTGGAACCGGACCAGGTTGCGCTAGTGGCGGTGTTATCGGCCTGTGCTGAAATTGGGGACTTGAGATTGGGAAGGTGGGTTCACTGGTACGTTGAAGAGGGATTGTGTGTTAGAGCTAAGTCGCGGTTGGTGACTTTGTACAATGCACTCATACATATGTATGCCAGTTGTGGTTTGGTTGATGAAGCGTATAAGGTGTTCAAGCAGATGCCTAGAAGGAGCACTGTCTCGTGGACAAGCATCATAGTTGGGTTCGCAAAGCAGGGTTGCGGGGAGGAAGCTCTTCGAATATTTCAATTGATGCTGAGCTCGGAACTTGATGATGTAAGACCCGATGAAATTACTTTCCTTGGGGTGTTGTGTGCCTGTAGCCATGCTGGATTAGTTGATGAGGGCCGAAGACTTTTCAAGTTCATGACGCAGACTTGGGGACTCGAACCAAGGATTGAGCACTATGGCTGCATGGTCGATCTATTAAGCCGTGCTGGTTTTTTAAATGAAGCTCATGTACTTGTGCAGACTATGCCAATGGAGCCAAATGACGCTGTGTGGGGTGCTCTCCTCGGCGGTTGCATGCTTCACAAGAATTCTGAGCTTGCATCACTTGCAGCTCAAAAGTTAACAGTTGCACTTGACCCTGACCAAGCCGCAGGGTATCTTGTGCTCTTATCGAATGTGTATGCTTCTGCTAAAAGATGGCTAGATGTTGCTTATGTGAGACAGAAAATGGTTCACGTGGGCGTGAAGAAGCCTCCAGGTCGAAGTTGGGTTCAAATCAATGGAGCTGTTCATGGTTTTGTGGCAGGTGATAGGACCCATAAACATGAATCTTTGATCTATGAAACGGTTGGCGAGATCACAAGGCAAGCCCAGCAAGAAGGCCGCGAACCAGGCACATTAAACATGCTTTCCCTTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

556

Amino Acids

61.64

Weight (kDa)

7.85

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 86 - 135 7.8e-07 PPR repeat family
PPR_2 PF13041 187 - 219 6.4e-08 PPR repeat family
PPR PF01535 189 - 219 6.5e-08 PPR repeat
PPR_2 PF13041 217 - 265 3.3e-10 PPR repeat family
PPR PF01535 220 - 249 4.8e-09 PPR repeat
PPR_2 PF13041 294 - 323 8.2e-06 PPR repeat family
PPR PF01535 295 - 322 6.3e-07 PPR repeat
PPR_1 PF12854 296 - 319 2.9e-06 PPR repeat
PPR PF01535 325 - 353 1e-05 PPR repeat
E_motif PF20431 443 - 507 2.7e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016849)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14600
malus_domestica MD06G1197100.v1.1
prunus_persica Prupe.5G197400_v2.0.a1
pyrus_communis pycom06g17390
rosa_chinensis RchiOBHm_Chr7g0181891
rosa_laevigata RLG00000005165
rosa_multiflora Rmu_co8431917.1_g000001 Rmu_sc0021327.1_g000007
rosa_roxburghii Rroxscaffold_3G00271660
rosa_rugosa Rorug06G0444800
rosa_samantha Rh7AG047100 Rh7BG046700 Rh7CG047200
rosa_wichuraiana Rw7G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 497, 1541
Acc36I ACCTGC 2 cut(s) 497, 1541
AccI GTMKAC 1 cut(s) 371
AccII CGCG 5 cut(s) 527, 529, 622, 871, 1632
AcsI RAATTY 2 cut(s) 129, 1333
AcvI CACGTG 1 cut(s) 1483
AfaI GTAC 5 cut(s) 189, 262, 836, 887, 1257
AgsI TTSAA 7 cut(s) 10, 842, 949, 1043, 1156, 1520, 1664
AjnI CCWGG 3 cut(s) 759, 1501, 1636
AloI GAACNNNNNNTCC 2 cut(s) 810, 842
Alw21I GWGCWC 6 cut(s) 691, 971, 1058, 1200, 1306, 1413
Alw26I GTCTC 2 cut(s) 979, 1459
AoxI GGCC 3 cut(s) 786, 1141, 1627
ApeKI GCWGC 6 cut(s) 76, 102, 300, 580, 1206, 1355
ApoI RAATTY 2 cut(s) 129, 1333
Asp700I GAANNNNTTC 1 cut(s) 1029
AspLEI GCGC 8 cut(s) 81, 229, 401, 527, 529, 531, 622, 769
AspS9I GGNCC 3 cut(s) 757, 1141, 1560
AsuC2I CCSGG 2 cut(s) 312, 605
AsuHPI GGTGA 3 cut(s) 151, 889, 1565
AsuII TTCGAA 1 cut(s) 1033
AvaII GGWCC 2 cut(s) 757, 1560
BaeI ACNNNNGTAYC 2 cut(s) 179, 212
BanII GRGCYC 1 cut(s) 1058
BarI GAAGNNNNNNTAC 2 cut(s) 1239, 1271
BauI CACGAG 1 cut(s) 976
BbrPI CACGTG 1 cut(s) 1483
BbsI GAAGAC 1 cut(s) 1153
Bbv12I GWGCWC 6 cut(s) 691, 971, 1058, 1200, 1306, 1413
BbvI GCAGC 6 cut(s) 88, 89, 312, 567, 1193, 1367
BccI CCATC 4 cut(s) 359, 406, 608, 1437
BceAI ACGGC 1 cut(s) 1212
BciT130I CCWGG 3 cut(s) 761, 1503, 1638
BcnI CCSGG 2 cut(s) 312, 605
BcoDI GTCTC 2 cut(s) 979, 1459
BfaI CTAG 6 cut(s) 63, 191, 402, 770, 960, 1448
BfmI CTRYAG 1 cut(s) 1114
BfoI RGCGCY 1 cut(s) 82
BfuAI ACCTGC 2 cut(s) 497, 1541
BlpI GCTNAGC 1 cut(s) 1052
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 5 cut(s) 312, 605, 761, 1503, 1638
Bme18I GGWCC 2 cut(s) 757, 1560
BmgT120I GGNCC 3 cut(s) 757, 1141, 1560
BmiI GGNNCC 5 cut(s) 275, 602, 753, 1281, 1562
BmrFI CCNGG 5 cut(s) 312, 605, 761, 1503, 1638
BmsI GCATC 5 cut(s) 630, 945, 996, 1038, 1355
BpiI GAAGAC 1 cut(s) 1153
BpmI CTGGAG 1 cut(s) 1485
Bpu1102I GCTNAGC 1 cut(s) 1052
Bpu14I TTCGAA 1 cut(s) 1033
BpuEI CTTGAG 1 cut(s) 829
BpuMI CCSGG 2 cut(s) 312, 605
BsaAI YACGTR 2 cut(s) 375, 1483
BsaJI CCNNGG 5 cut(s) 151, 311, 1096, 1187, 1309
BsaWI WCCGGW 1 cut(s) 754
Bse1I ACTGG 3 cut(s) 486, 836, 912
BseBI CCWGG 3 cut(s) 761, 1503, 1638
BseDI CCNNGG 5 cut(s) 151, 311, 1096, 1187, 1309
BseGI GGATG 4 cut(s) 370, 417, 738, 751
BseMII CTCAG 4 cut(s) 221, 704, 1043, 1329
BseNI ACTGG 3 cut(s) 486, 836, 912
BsePI GCGCGC 2 cut(s) 525, 527
BseRI GAGGAG 5 cut(s) 46, 49, 571, 613, 1298
BseXI GCAGC 6 cut(s) 88, 89, 312, 567, 1193, 1367
BseYI CCCAGC 1 cut(s) 1617
BsgI GTGCAG 1 cut(s) 1283
Bsh1236I CGCG 5 cut(s) 527, 529, 622, 871, 1632
BshFI GGCC 3 cut(s) 788, 1143, 1629
BsiHKAI GWGCWC 6 cut(s) 691, 971, 1058, 1200, 1306, 1413
BsiSI CCGG 5 cut(s) 311, 362, 604, 644, 755
BslFI GGGAC 2 cut(s) 818, 1191
BsmAI GTCTC 2 cut(s) 979, 1459
BsmFI GGGAC 2 cut(s) 818, 1191
BsnI GGCC 3 cut(s) 788, 1143, 1629
Bsp119I TTCGAA 1 cut(s) 1033
Bsp1286I GDGCHC 6 cut(s) 691, 971, 1058, 1200, 1306, 1413
Bsp1407I TGTACA 1 cut(s) 885
Bsp143I GATC 3 cut(s) 1216, 1581, 1602
Bsp1720I GCTNAGC 1 cut(s) 1052
Bsp19I CCATGG 1 cut(s) 151
BspANI GGCC 3 cut(s) 788, 1143, 1629
BspCNI CTCAG 4 cut(s) 222, 703, 1044, 1330
BspFNI CGCG 5 cut(s) 527, 529, 622, 871, 1632
BspHI TCATGA 1 cut(s) 1161
BspLI GGNNCC 5 cut(s) 275, 602, 753, 1281, 1562
BspMI ACCTGC 2 cut(s) 497, 1541
BspQI GCTCTTC 1 cut(s) 1035
BspT104I TTCGAA 1 cut(s) 1033
BsrGI TGTACA 1 cut(s) 885
BsrI ACTGG 3 cut(s) 486, 836, 912
BssECI CCNNGG 5 cut(s) 151, 311, 1096, 1187, 1309
BssHII GCGCGC 2 cut(s) 525, 527
BssMI GATC 3 cut(s) 1216, 1581, 1602
BssNAI GTATAC 1 cut(s) 372
BssSI CACGAG 1 cut(s) 976
BssT1I CCWWGG 3 cut(s) 151, 1096, 1187
Bst1107I GTATAC 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 976
Bst2UI CCWGG 3 cut(s) 761, 1503, 1638
Bst4CI ACNGT 4 cut(s) 268, 973, 1372, 1594
Bst6I CTCTTC 3 cut(s) 245, 837, 1035
BstAPI GCANNNNNTGC 2 cut(s) 1270, 1352
BstAUI TGTACA 1 cut(s) 885
BstBAI YACGTR 2 cut(s) 375, 1483
BstBI TTCGAA 1 cut(s) 1033
BstC8I GCNNGC 8 cut(s) 298, 342, 397, 527, 529, 1322, 1344, 1614
BstDEI CTNAG 6 cut(s) 183, 230, 690, 864, 1052, 1338
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 4 cut(s) 370, 417, 738, 751
BstFNI CGCG 5 cut(s) 527, 529, 622, 871, 1632
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 8 cut(s) 81, 229, 401, 527, 529, 531, 622, 769
BstKTI GATC 3 cut(s) 1219, 1584, 1605
BstMAI GTCTC 2 cut(s) 979, 1459
BstMBI GATC 3 cut(s) 1216, 1581, 1602
BstMWI GCNNNNNNNGC 8 cut(s) 353, 686, 773, 1270, 1279, 1352, 1618, 1638
BstNI CCWGG 3 cut(s) 761, 1503, 1638
BstNSI RCATGY 2 cut(s) 1324, 1654
BstSCI CCNGG 5 cut(s) 310, 603, 759, 1501, 1636
BstSFI CTRYAG 1 cut(s) 1114
BstSNI TACGTA 1 cut(s) 375
BstUI CGCG 5 cut(s) 527, 529, 622, 871, 1632
BstV1I GCAGC 6 cut(s) 88, 89, 312, 567, 1193, 1367
BstV2I GAAGAC 1 cut(s) 1153
BstZ17I GTATAC 1 cut(s) 372
BsuRI GGCC 3 cut(s) 788, 1143, 1629
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 4 cut(s) 370, 417, 738, 751
BtsIMutI CAGTG 2 cut(s) 829, 969
BveI ACCTGC 2 cut(s) 497, 1541
Cac8I GCNNGC 8 cut(s) 298, 342, 397, 527, 529, 1322, 1344, 1614
CciI TCATGA 1 cut(s) 1161
CfoI GCGC 8 cut(s) 81, 229, 401, 527, 529, 531, 622, 769
Cfr13I GGNCC 3 cut(s) 757, 1141, 1560
CseI GACGC 2 cut(s) 1174, 1298
CsiI ACCWGGT 1 cut(s) 759
Csp6I GTAC 5 cut(s) 188, 261, 835, 886, 1256
CviQI GTAC 5 cut(s) 188, 261, 835, 886, 1256
DdeI CTNAG 6 cut(s) 183, 230, 690, 864, 1052, 1338
DpnI GATC 3 cut(s) 1218, 1583, 1604
DpnII GATC 3 cut(s) 1216, 1581, 1602
DraI TTTAAA 2 cut(s) 30, 1242
Eam1104I CTCTTC 3 cut(s) 245, 837, 1035
EarI CTCTTC 3 cut(s) 245, 837, 1035
EciI GGCGGA 2 cut(s) 745, 758
Ecl136II GAGCTC 1 cut(s) 1056
Eco105I TACGTA 1 cut(s) 375
Eco130I CCWWGG 3 cut(s) 151, 1096, 1187
Eco24I GRGCYC 1 cut(s) 1058
Eco47I GGWCC 2 cut(s) 757, 1560
Eco53kI GAGCTC 1 cut(s) 1056
Eco72I CACGTG 1 cut(s) 1483
EcoICRI GAGCTC 1 cut(s) 1056
EcoO109I RGGNCCY 1 cut(s) 1560
EcoRI GAATTC 1 cut(s) 1333
EcoRII CCWGG 3 cut(s) 759, 1501, 1636
EcoT14I CCWWGG 3 cut(s) 151, 1096, 1187
EcoT38I GRGCYC 1 cut(s) 1058
ErhI CCWWGG 3 cut(s) 151, 1096, 1187
FaqI GGGAC 2 cut(s) 818, 1191
FauI CCCGC 2 cut(s) 673, 1010
FauNDI CATATG 1 cut(s) 903
FblI GTMKAC 1 cut(s) 371
FokI GGATG 4 cut(s) 377, 424, 745, 758
FriOI GRGCYC 1 cut(s) 1058
FspBI CTAG 6 cut(s) 63, 191, 402, 770, 960, 1448
GlaI GCGC 8 cut(s) 80, 228, 400, 526, 528, 530, 621, 768
GsaI CCCAGC 1 cut(s) 1621
GsuI CTGGAG 1 cut(s) 1485
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 3 cut(s) 788, 1143, 1629
HapII CCGG 5 cut(s) 311, 362, 604, 644, 755
HgaI GACGC 2 cut(s) 1174, 1298
HhaI GCGC 8 cut(s) 81, 229, 401, 527, 529, 531, 622, 769
Hin6I GCGC 8 cut(s) 79, 227, 399, 525, 527, 529, 620, 767
HinP1I GCGC 8 cut(s) 79, 227, 399, 525, 527, 529, 620, 767
HincII GTYRAC 1 cut(s) 1368
HindII GTYRAC 1 cut(s) 1368
HindIII AAGCTT 1 cut(s) 711
HinfI GANTC 4 cut(s) 156, 253, 1179, 1574
HpaI GTTAAC 1 cut(s) 1368
HpaII CCGG 5 cut(s) 311, 362, 604, 644, 755
HphI GGTGA 3 cut(s) 151, 889, 1565
Hpy166II GTNNAC 6 cut(s) 372, 666, 829, 981, 1368, 1480
Hpy188I TCNGA 8 cut(s) 116, 123, 258, 287, 483, 693, 1060, 1339
Hpy188III TCNNGA 4 cut(s) 63, 218, 241, 1162
Hpy8I GTNNAC 6 cut(s) 372, 666, 829, 981, 1368, 1480
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 5 cut(s) 310, 733, 813, 957, 1619
HpyCH4III ACNGT 4 cut(s) 268, 973, 1372, 1594
HpyCH4IV ACGT 3 cut(s) 374, 837, 1482
HpyF10VI GCNNNNNNNGC 8 cut(s) 353, 686, 773, 1270, 1279, 1352, 1618, 1638
HpyF3I CTNAG 6 cut(s) 183, 230, 690, 864, 1052, 1338
HpySE526I ACGT 3 cut(s) 374, 837, 1482
HspAI GCGC 8 cut(s) 79, 227, 399, 525, 527, 529, 620, 767
KspAI GTTAAC 1 cut(s) 1368
Kzo9I GATC 3 cut(s) 1216, 1581, 1602
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 5 cut(s) 427, 600, 966, 1279, 1529
Lsp1109I GCAGC 6 cut(s) 88, 89, 312, 567, 1193, 1367
LweI GCATC 5 cut(s) 630, 945, 996, 1038, 1355
MabI ACCWGGT 1 cut(s) 759
MaeI CTAG 6 cut(s) 63, 191, 402, 770, 960, 1448
MaeII ACGT 3 cut(s) 374, 837, 1482
MaeIII GTNAC 1 cut(s) 877
MalI GATC 3 cut(s) 1218, 1583, 1604
MboI GATC 3 cut(s) 1216, 1581, 1602
MboII GAAGA 5 cut(s) 262, 854, 1022, 1158, 1504
MfeI CAATTG 1 cut(s) 1043
MhlI GDGCHC 6 cut(s) 691, 971, 1058, 1200, 1306, 1413
MluCI AATT 5 cut(s) 129, 798, 1043, 1086, 1333
MlyI GAGTC 2 cut(s) 262, 1173
MmeI TCCRAC 1 cut(s) 551
MroXI GAANNNNTTC 1 cut(s) 1029
MseI TTAA 6 cut(s) 29, 42, 1223, 1241, 1367, 1646
MslI CAYNNNNRTG 3 cut(s) 902, 906, 1569
MspI CCGG 5 cut(s) 311, 362, 604, 644, 755
MspR9I CCNGG 5 cut(s) 312, 605, 761, 1503, 1638
MunI CAATTG 1 cut(s) 1043
MvaI CCWGG 3 cut(s) 761, 1503, 1638
MvnI CGCG 5 cut(s) 527, 529, 622, 871, 1632
MwoI GCNNNNNNNGC 8 cut(s) 353, 686, 773, 1270, 1279, 1352, 1618, 1638
NciI CCSGG 2 cut(s) 312, 605
NcoI CCATGG 1 cut(s) 151
NdeI CATATG 1 cut(s) 903
NdeII GATC 3 cut(s) 1216, 1581, 1602
NlaIV GGNNCC 5 cut(s) 275, 602, 753, 1281, 1562
NmeAIII GCCGAG 2 cut(s) 382, 1290
NmuCI GTSAC 1 cut(s) 877
NspI RCATGY 2 cut(s) 1324, 1654
NspV TTCGAA 1 cut(s) 1033
PaeI GCATGC 1 cut(s) 1324
PagI TCATGA 1 cut(s) 1161
PaqCI CACCTGC 2 cut(s) 497, 1541
PauI GCGCGC 2 cut(s) 525, 527
PciSI GCTCTTC 1 cut(s) 1035
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 2 cut(s) 156, 1574
PleI GAGTC 2 cut(s) 261, 1173
PmaCI CACGTG 1 cut(s) 1483
PmlI CACGTG 1 cut(s) 1483
PpsI GAGTC 2 cut(s) 261, 1173
Ppu21I YACGTR 2 cut(s) 375, 1483
PpuMI RGGWCCY 1 cut(s) 1560
Psp124BI GAGCTC 1 cut(s) 1058
Psp5II RGGWCCY 1 cut(s) 1560
Psp6I CCWGG 3 cut(s) 759, 1501, 1636
PspCI CACGTG 1 cut(s) 1483
PspFI CCCAGC 1 cut(s) 1617
PspGI CCWGG 3 cut(s) 759, 1501, 1636
PspN4I GGNNCC 5 cut(s) 275, 602, 753, 1281, 1562
PspPI GGNCC 3 cut(s) 757, 1141, 1560
PspPPI RGGWCCY 1 cut(s) 1560
PsrI GAACNNNNNNTAC 2 cut(s) 929, 961
PteI GCGCGC 2 cut(s) 525, 527
RsaI GTAC 5 cut(s) 189, 262, 836, 887, 1257
RsaNI GTAC 5 cut(s) 188, 261, 835, 886, 1256
RseI CAYNNNNRTG 3 cut(s) 902, 906, 1569
SacI GAGCTC 1 cut(s) 1058
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 6 cut(s) 29, 42, 1223, 1241, 1367, 1646
Sau3AI GATC 3 cut(s) 1216, 1581, 1602
Sau96I GGNCC 3 cut(s) 757, 1141, 1560
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 2 cut(s) 262, 1173
ScrFI CCNGG 5 cut(s) 312, 605, 761, 1503, 1638
SduI GDGCHC 6 cut(s) 691, 971, 1058, 1200, 1306, 1413
SexAI ACCWGGT 1 cut(s) 759
SfaNI GCATC 5 cut(s) 630, 945, 996, 1038, 1355
SfcI CTRYAG 1 cut(s) 1114
SfuI TTCGAA 1 cut(s) 1033
SinI GGWCC 2 cut(s) 757, 1560
SmiMI CAYNNNNRTG 3 cut(s) 902, 906, 1569
SmlI CTYRAG 1 cut(s) 808
SmoI CTYRAG 1 cut(s) 808
SnaBI TACGTA 1 cut(s) 375
SphI GCATGC 1 cut(s) 1324
Sse9I AATT 5 cut(s) 129, 798, 1043, 1086, 1333
SspI AATATT 1 cut(s) 1038
SspMI CTAG 6 cut(s) 63, 191, 402, 770, 960, 1448
SstI GAGCTC 1 cut(s) 1058
StyD4I CCNGG 5 cut(s) 310, 603, 759, 1501, 1636
StyI CCWWGG 3 cut(s) 151, 1096, 1187
TaaI ACNGT 4 cut(s) 268, 973, 1372, 1594
TaiI ACGT 3 cut(s) 377, 840, 1485
TaqI TCGA 5 cut(s) 1033, 1182, 1215, 1418, 1507
TasI AATT 5 cut(s) 129, 798, 1043, 1086, 1333
TatI WGTACW 3 cut(s) 260, 885, 1255
TauI GCSGC 4 cut(s) 347, 625, 1397, 1632
TfiI GAWTC 2 cut(s) 156, 1574
Tru1I TTAA 6 cut(s) 29, 42, 1223, 1241, 1367, 1646
Tru9I TTAA 6 cut(s) 29, 42, 1223, 1241, 1367, 1646
TscAI CASTG 2 cut(s) 836, 976
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 6 cut(s) 76, 102, 300, 580, 1206, 1355
Tsp45I GTSAC 1 cut(s) 877
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 2 cut(s) 836, 976
VpaK11BI GGWCC 2 cut(s) 757, 1560
XapI RAATTY 2 cut(s) 129, 1333
XbaI TCTAGA 1 cut(s) 62
XceI RCATGY 2 cut(s) 1324, 1654
XcmI CCANNNNNNNNNTGG 2 cut(s) 919, 1509
XmiI GTMKAC 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 1029
XspI CTAG 6 cut(s) 63, 191, 402, 770, 960, 1448
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.