Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014810

Physical Location & Seq

Genomic Coordinates Forward (+)

33263898 .. 33265412

Gene Structure 1515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1198700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGCTGCCAAGATCTCCTCCCCCTCCTCCTCCTACGGCAATCCCTGCCTTGATCTGTTTTTCCATGTAACACAAAAATACTTCGAGGATGACACCGAGCAGGCCTCACACAATTCCCGTTTGCTTAACTATCTGAAGCAACTTCTGCCCTTGGCCTGGTCTCACAATCCCCTAATCACACCCAAGCTCATAAGCAACCTCGACTCTGGAAAACTTTATGATGAAGCGTTCTTCTCCGCCGTGTTTTGGCTCCACCACAACCACCCAAAGACTCTACTATGTAACGTTTCATTTAAAGACTCGTATGTCCTTATTGACATTCTCTACAGCCTTTTGGAAGGCCAAGATGCCGCTGAGAGGCTGCGCAGAGATCCGGATTACAAGCTGTTGCATGACCGGGTGATGGATCTTTTCGTGGAGAGGTTGAAGTCTGATATTGAAAAGTTGAAGCAGAACAAGCTGAAACTCAAGTTGAATGATGATGTTGGCAATGATATTGATGATGATGTTTTCGTTACTGAGGCTGCAGCGTGGTGCATTAGCACATGCCCCTCGGTAACCAAAGCCACCCGCGCTGTTTTGCTGCGTGAAAGCGTTGAGAGAAGGCTTTTCTCTCCAGAATCATCAGTTCATTCAAAAGAGTGGAAGCGGCTGACGAAGGAGGTTTTGGAGCCCTTGACCAAATACTACAACCGTCAAGGCATTGCTGGACACAAGCGCCGTGACGATAAGAAGTATTTGGAGGAAATTGCAGCAGGCAATTTAAGTGGCATAAAGTACGACGCTCTTCTTCCACATCAGATCATACTCTATGCTGAAGATGGCAGCGATATCGAGCAAGCGGCTGAGCTTCAGTGGAAGACAATGGTGGAGGGCATGCACCTGAAGGGAAAGTTCAAAAACTGCTTGGCTCTGTATCACACCACCAAATACGCGGACAAGGGAGTTGGACGACGGATGATGATGAGTTTGGCACTTTTGCTGTCTCAACTGAGCGAAGGGCCATGGAAAGGCAAGGTGATCACTTTTGGTAATTCGGCCAAAGATCAGCTGGTACTACATTCGATACGAGGCGATGATCTCAAGTCCAAGTGCAATTTTATGAGGACAATGGAGTCCGACTTGTTTGTTGATTATGAGAAATTGTTTGATATTCCGGAGGTGGCTGCCATTGCCAAGGGGAGTGTGAAGCCGAAGCAGAAGATCAAGAAGGTGTTTGTATTTAGCGAGTCCCTTAGCGGCATACAAGAGAGCCAGTATGAGGCAATACGGAGAAAGTTTAAGGACAAAGGGTATGGAGATGACGCGGTGCCACACATTCTGTTTTGGAATTTTGGGGAATTAGAAGATCCGTCGATGCCTCCAAAACAACATCCAGGGCTGACACTGCTCAGTGGCTACTCCGACAATTTGATCAAGGTCTTCTTGTATAATGGTGGGGAAATTGTCCCGCGCCATCTAATGGAGGCAGCCCTTTCGGACAAAGAGTATCAAACTCTTGCTGTAGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

505

Amino Acids

57.48

Weight (kDa)

6.77

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	10 - 97	1.9e-15	Domain of unknown function (DUF2828)
DUF2828	PF11443	115 - 233	5.5e-10	Domain of unknown function (DUF2828)
DUF7788	PF25043	317 - 480	1.2e-30	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014810)

Species	Orthologous Gene IDs
malus_domestica	MD00G1207400.v1.1 MD03G1055000.v1.1 MD04G1053500.v1.1 MD06G1198700.v1.1 MD07G1028900.v1.1 MD12G1072700.v1.1
prunus_persica	Prupe.1G152600_v2.0.a1 Prupe.2G155300_v2.0.a1 Prupe.5G035500_v2.0.a1 Prupe.5G035900_v2.0.a1 Prupe.5G194100_v2.0.a1 Prupe.8G033200_v2.0.a1 Prupe.8G043600_v2.0.a1
pyrus_communis	pycom04g04610 pycom12g06140 pycom12g06180 pycom15g36970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	305, 1114
Acc16I	TGCGCA	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	1309
AccB7I	CCANNNNNTGG	1 cut(s)	1462
AccI	GTMKAC	1 cut(s)	1509
AccII	CGCG	4 cut(s)	573, 935, 1307, 1453
AccIII	TCCGGA	2 cut(s)	373, 1156
AciI	CCGC	9 cut(s)	237, 351, 571, 649, 842, 935, 1239, 1307, 1451
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	3 cut(s)	365, 414, 1343
AcoI	YGGCCR	1 cut(s)	1038
AcsI	RAATTY	1 cut(s)	1330
AcuI	CTGAAG	4 cut(s)	155, 836, 837, 905
AfaI	GTAC	2 cut(s)	779, 1056
AfiI	CCNNNNNNNGG	7 cut(s)	156, 246, 357, 403, 1010, 1261, 1462
AgsI	TTSAA	6 cut(s)	427, 440, 448, 475, 636, 898
AjnI	CCWGG	2 cut(s)	155, 1375
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	5 cut(s)	187, 385, 460, 850, 1051
AluI	AGCT	5 cut(s)	187, 385, 460, 850, 1051
Alw26I	GTCTC	2 cut(s)	165, 990
AlwI	GGATC	3 cut(s)	365, 414, 1343
Aor13HI	TCCGGA	2 cut(s)	373, 1156
AoxI	GGCC	5 cut(s)	102, 153, 340, 1001, 1038
ApeKI	GCWGC	9 cut(s)	5, 361, 524, 527, 583, 752, 825, 1166, 1469
ApoI	RAATTY	1 cut(s)	1330
AspLEI	GCGC	4 cut(s)	366, 575, 720, 1455
AspS9I	GGNCC	1 cut(s)	1001
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	412, 1030
BanI	GGYRCC	1 cut(s)	1309
BanII	GRGCYC	1 cut(s)	675
BbsI	GAAGAC	2 cut(s)	866, 1414
BbvI	GCAGC	8 cut(s)	348, 511, 539, 570, 764, 837, 1153, 1481
BccI	CCATC	3 cut(s)	397, 815, 1464
BceAI	ACGGC	3 cut(s)	52, 224, 705
BcgI	CGANNNNNNTGC	4 cut(s)	814, 848, 1458, 1492
BciT130I	CCWGG	2 cut(s)	157, 1377
BclI	TGATCA	2 cut(s)	1020, 1413
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	165, 990
BfmI	CTRYAG	3 cut(s)	325, 525, 1503
BfoI	RGCGCY	1 cut(s)	721
BglII	AGATCT	1 cut(s)	12
BlpI	GCTNAGC	1 cut(s)	846
Bme1390I	CCNGG	3 cut(s)	157, 398, 1377
BmgT120I	GGNCC	1 cut(s)	1001
BmiI	GGNNCC	3 cut(s)	251, 672, 1311
BmrFI	CCNGG	3 cut(s)	157, 398, 1377
BmsI	GCATC	2 cut(s)	337, 1347
BpiI	GAAGAC	2 cut(s)	866, 1414
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	1 cut(s)	600
Bpu10I	CCTNAGC	1 cut(s)	1235
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	452, 1067
BpuMI	CCSGG	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	5 cut(s)	150, 552, 1004, 1176, 1376
BsaWI	WCCGGW	2 cut(s)	373, 1156
Bsc4I	CCNNNNNNNGG	7 cut(s)	156, 246, 357, 403, 1010, 1261, 1462
Bse1I	ACTGG	1 cut(s)	1255
Bse3DI	GCAATG	3 cut(s)	496, 702, 1170
BseAI	TCCGGA	2 cut(s)	373, 1156
BseBI	CCWGG	2 cut(s)	157, 1377
BseDI	CCNNGG	5 cut(s)	150, 552, 1004, 1176, 1376
BseGI	GGATG	3 cut(s)	94, 963, 1372
BseLI	CCNNNNNNNGG	7 cut(s)	156, 246, 357, 403, 1010, 1261, 1462
BseMI	GCAATG	3 cut(s)	496, 702, 1170
BseMII	CTCAG	5 cut(s)	345, 510, 837, 983, 1405
BseNI	ACTGG	1 cut(s)	1255
BseRI	GAGGAG	3 cut(s)	7, 16, 19
BseXI	GCAGC	8 cut(s)	348, 511, 539, 570, 764, 837, 1153, 1481
Bsh1236I	CGCG	4 cut(s)	573, 935, 1307, 1453
BshFI	GGCC	5 cut(s)	104, 155, 342, 1003, 1040
BshNI	GGYRCC	1 cut(s)	1309
BsiSI	CCGG	3 cut(s)	374, 397, 1157
BslFI	GGGAC	2 cut(s)	1216, 1433
BslI	CCNNNNNNNGG	7 cut(s)	156, 246, 357, 403, 1010, 1261, 1462
BsmAI	GTCTC	2 cut(s)	165, 990
BsmFI	GGGAC	2 cut(s)	1216, 1433
BsnI	GGCC	5 cut(s)	104, 155, 342, 1003, 1040
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp13I	TCCGGA	2 cut(s)	373, 1156
Bsp1720I	GCTNAGC	1 cut(s)	846
Bsp19I	CCATGG	1 cut(s)	1004
BspACI	CCGC	9 cut(s)	237, 351, 571, 649, 842, 935, 1239, 1307, 1451
BspANI	GGCC	5 cut(s)	104, 155, 342, 1003, 1040
BspCNI	CTCAG	5 cut(s)	346, 511, 838, 984, 1404
BspEI	TCCGGA	2 cut(s)	373, 1156
BspFNI	CGCG	4 cut(s)	573, 935, 1307, 1453
BspLI	GGNNCC	3 cut(s)	251, 672, 1311
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	3 cut(s)	365, 414, 1343
BspQI	GCTCTTC	1 cut(s)	792
BspT107I	GGYRCC	1 cut(s)	1309
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	3 cut(s)	496, 702, 1170
BsrI	ACTGG	1 cut(s)	1255
BssECI	CCNNGG	5 cut(s)	150, 552, 1004, 1176, 1376
BssT1I	CCWWGG	3 cut(s)	150, 1004, 1176
Bst2UI	CCWGG	2 cut(s)	157, 1377
Bst4CI	ACNGT	1 cut(s)	695
Bst6I	CTCTTC	1 cut(s)	792
BstAPI	GCANNNNNTGC	2 cut(s)	45, 145
BstC8I	GCNNGC	4 cut(s)	102, 757, 840, 878
BstDEI	CTNAG	6 cut(s)	354, 519, 846, 992, 1235, 1391
BstDSI	CCRYGG	1 cut(s)	1004
BstEII	GGTNACC	1 cut(s)	556
BstF5I	GGATG	3 cut(s)	94, 963, 1372
BstFNI	CGCG	4 cut(s)	573, 935, 1307, 1453
BstH2I	RGCGCY	1 cut(s)	721
BstHHI	GCGC	4 cut(s)	366, 575, 720, 1455
BstMAI	GTCTC	2 cut(s)	165, 990
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 145, 457, 572, 1172, 1387
BstNI	CCWGG	2 cut(s)	157, 1377
BstNSI	RCATGY	2 cut(s)	549, 880
BstPI	GGTNACC	1 cut(s)	556
BstSCI	CCNGG	3 cut(s)	155, 396, 1375
BstSFI	CTRYAG	3 cut(s)	325, 525, 1503
BstUI	CGCG	4 cut(s)	573, 935, 1307, 1453
BstV1I	GCAGC	8 cut(s)	348, 511, 539, 570, 764, 837, 1153, 1481
BstV2I	GAAGAC	2 cut(s)	866, 1414
BstX2I	RGATCY	4 cut(s)	12, 370, 406, 1348
BstYI	RGATCY	4 cut(s)	12, 370, 406, 1348
BsuRI	GGCC	5 cut(s)	104, 155, 342, 1003, 1040
BtgI	CCRYGG	1 cut(s)	1004
BtgZI	GCGATG	1 cut(s)	1089
BtsCI	GGATG	3 cut(s)	94, 963, 1372
BtsI	GCAGTG	1 cut(s)	1385
BtsIMutI	CAGTG	3 cut(s)	860, 1385, 1399
Cac8I	GCNNGC	4 cut(s)	102, 757, 840, 878
CfoI	GCGC	4 cut(s)	366, 575, 720, 1455
Cfr13I	GGNCC	1 cut(s)	1001
CseI	GACGC	2 cut(s)	791, 1313
Csp6I	GTAC	2 cut(s)	778, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	748, 783
CviAII	CATG	5 cut(s)	65, 392, 546, 877, 1005
CviQI	GTAC	2 cut(s)	778, 1055
DdeI	CTNAG	6 cut(s)	354, 519, 846, 992, 1235, 1391
DraI	TTTAAA	1 cut(s)	295
DrdI	GACNNNNNNGTC	2 cut(s)	305, 1114
DseDI	GACNNNNNNGTC	2 cut(s)	305, 1114
EaeI	YGGCCR	1 cut(s)	1038
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
EciI	GGCGGA	1 cut(s)	226
Eco130I	CCWWGG	3 cut(s)	150, 1004, 1176
Eco147I	AGGCCT	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	675
Eco31I	GGTCTC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	832
Eco57I	CTGAAG	4 cut(s)	155, 836, 837, 905
Eco91I	GGTNACC	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	155, 1375
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	3 cut(s)	150, 1004, 1176
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	3 cut(s)	150, 1004, 1176
FaeI	CATG	5 cut(s)	68, 395, 549, 880, 1008
FalI	AAGNNNNNCTT	2 cut(s)	1409, 1441
FaqI	GGGAC	2 cut(s)	1216, 1433
FatI	CATG	5 cut(s)	64, 391, 545, 876, 1004
FauI	CCCGC	2 cut(s)	578, 1458
FbaI	TGATCA	2 cut(s)	1020, 1413
FblI	GTMKAC	1 cut(s)	1509
FokI	GGATG	3 cut(s)	101, 970, 1359
FriOI	GRGCYC	1 cut(s)	675
FspI	TGCGCA	1 cut(s)	365
GlaI	GCGC	4 cut(s)	365, 574, 719, 1454
GsuI	CTGGAG	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	721
HaeIII	GGCC	5 cut(s)	104, 155, 342, 1003, 1040
HapII	CCGG	3 cut(s)	374, 397, 1157
HgaI	GACGC	2 cut(s)	791, 1313
HhaI	GCGC	4 cut(s)	366, 575, 720, 1455
Hin1II	CATG	5 cut(s)	68, 395, 549, 880, 1008
Hin6I	GCGC	4 cut(s)	364, 573, 718, 1453
HinP1I	GCGC	4 cut(s)	364, 573, 718, 1453
HincII	GTYRAC	1 cut(s)	1510
HindII	GTYRAC	1 cut(s)	1510
HinfI	GANTC	6 cut(s)	203, 271, 299, 620, 1115, 1229
HpaII	CCGG	3 cut(s)	374, 397, 1157
HphI	GGTGA	2 cut(s)	412, 1030
Hpy166II	GTNNAC	1 cut(s)	1510
Hpy188I	TCNGA	6 cut(s)	135, 433, 801, 1120, 1405, 1480
Hpy188III	TCNNGA	5 cut(s)	207, 374, 617, 1157, 1207
Hpy8I	GTNNAC	1 cut(s)	1510
Hpy99I	CGWCG	3 cut(s)	785, 957, 1357
HpyAV	CCTTC	6 cut(s)	332, 597, 652, 880, 992, 1204
HpyCH4III	ACNGT	1 cut(s)	695
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	6 cut(s)	391, 527, 537, 752, 880, 1095
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 145, 457, 572, 1172, 1387
HpyF3I	CTNAG	6 cut(s)	354, 519, 846, 992, 1235, 1391
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	68, 395, 549, 880, 1008
HspAI	GCGC	4 cut(s)	364, 573, 718, 1453
Kpn2I	TCCGGA	2 cut(s)	373, 1156
Ksp22I	TGATCA	2 cut(s)	1020, 1413
LguI	GCTCTTC	1 cut(s)	792
LmnI	GCTCC	2 cut(s)	255, 670
Lsp1109I	GCAGC	8 cut(s)	348, 511, 539, 570, 764, 837, 1153, 1481
LweI	GCATC	2 cut(s)	337, 1347
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	5 cut(s)	67, 281, 514, 556, 722
MboII	GAAGA	8 cut(s)	223, 779, 782, 830, 871, 1213, 1358, 1414
MflI	RGATCY	4 cut(s)	12, 370, 406, 1348
MhlI	GDGCHC	1 cut(s)	675
MlyI	GAGTC	5 cut(s)	197, 265, 293, 1124, 1238
MmeI	TCCRAC	3 cut(s)	928, 1143, 1428
MroI	TCCGGA	2 cut(s)	373, 1156
MseI	TTAA	4 cut(s)	126, 294, 764, 1281
MspA1I	CMGCKG	2 cut(s)	353, 1051
MspI	CCGG	3 cut(s)	374, 397, 1157
MspR9I	CCNGG	3 cut(s)	157, 398, 1377
MvaI	CCWGG	2 cut(s)	157, 1377
MvnI	CGCG	4 cut(s)	573, 935, 1307, 1453
MwoI	GCNNNNNNNGC	6 cut(s)	45, 145, 457, 572, 1172, 1387
NciI	CCSGG	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	1004
NlaIII	CATG	5 cut(s)	68, 395, 549, 880, 1008
NlaIV	GGNNCC	3 cut(s)	251, 672, 1311
NmuCI	GTSAC	1 cut(s)	722
NsbI	TGCGCA	1 cut(s)	365
NspI	RCATGY	2 cut(s)	549, 880
PaeI	GCATGC	1 cut(s)	880
PceI	AGGCCT	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	792
PfeI	GAWTC	1 cut(s)	620
PflMI	CCANNNNNTGG	1 cut(s)	1462
PleI	GAGTC	5 cut(s)	197, 265, 293, 1123, 1237
PpsI	GAGTC	5 cut(s)	197, 265, 293, 1123, 1237
Psp1406I	AACGTT	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	155, 1375
PspEI	GGTNACC	1 cut(s)	556
PspGI	CCWGG	2 cut(s)	155, 1375
PspN4I	GGNNCC	3 cut(s)	251, 672, 1311
PspPI	GGNCC	1 cut(s)	1001
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	4 cut(s)	12, 370, 406, 1348
PvuII	CAGCTG	1 cut(s)	1051
RsaI	GTAC	2 cut(s)	779, 1056
RsaNI	GTAC	2 cut(s)	778, 1055
SalI	GTCGAC	1 cut(s)	1508
SapI	GCTCTTC	1 cut(s)	792
SaqAI	TTAA	4 cut(s)	126, 294, 764, 1281
Sau96I	GGNCC	1 cut(s)	1001
SchI	GAGTC	5 cut(s)	197, 265, 293, 1124, 1238
ScrFI	CCNGG	3 cut(s)	157, 398, 1377
SduI	GDGCHC	1 cut(s)	675
SfaNI	GCATC	2 cut(s)	337, 1347
SfcI	CTRYAG	3 cut(s)	325, 525, 1503
SmlI	CTYRAG	2 cut(s)	467, 1082
SmoI	CTYRAG	2 cut(s)	467, 1082
SphI	GCATGC	1 cut(s)	880
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	9 cut(s)	237, 351, 571, 649, 842, 935, 1239, 1307, 1451
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	155, 396, 1375
StyI	CCWWGG	3 cut(s)	150, 1004, 1176
TaaI	ACNGT	1 cut(s)	695
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	6 cut(s)	84, 201, 834, 1064, 1355, 1509
TauI	GCSGC	4 cut(s)	353, 652, 845, 1242
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	4 cut(s)	126, 294, 764, 1281
Tru9I	TTAA	4 cut(s)	126, 294, 764, 1281
TscAI	CASTG	3 cut(s)	860, 1392, 1399
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	9 cut(s)	5, 361, 524, 527, 583, 752, 825, 1166, 1469
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	3 cut(s)	237, 279, 620
TspGWI	ACGGA	3 cut(s)	970, 1285, 1341
TspRI	CASTG	3 cut(s)	860, 1392, 1399
Van91I	CCANNNNNTGG	1 cut(s)	1462
XapI	RAATTY	1 cut(s)	1330
XceI	RCATGY	2 cut(s)	549, 880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1048
XmiI	GTMKAC	1 cut(s)	1509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.