Prupe.8G033200_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014810
Physical Location & Seq
Reverse (-)
3105031 .. 3105687
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G033200.1

Sequence Viewer

Length: 621 bp
ATGCAGGGGCAGGGTTTGGGAAAATTTAAAAACTGCTTGGCTGTGTGTCACATCAAAGATTTCACGGGCATACGCCCCAGAGAATTGGCGGTGAGTTTGGGACTTTTGGTATCTGAACTGAGTGAAGAGACGGCATGGAAAGGAAAGATGATCAGTTCCGAAGGGGATGATCTCAAGTCCAAGTGCGAGTTTATGATGAGGACATGTAGCAGTGAGTTGGGATCGTATGTTCATAGTCGGAAGGTATGGGACTTCATTCGAGAAGTTGTTGTGAAAGAGAACTTGAAGGCAGAGCAGATGGTTAAGAAGGTGTTTGTGTTCACCGAGTTCGGAGGATATGGTGATGGTACATTCTTGAAGACTCTATATGAGGCAAAACAGAGCGAGTTTAAGGAGCAAGGGTACAGGGATAATGCAGTGCCACACATTTTGCTTTGGAATATGGGGGACTGGAACAAGCCTTGTATAGAAGAACATCATCCAGGGGTGACGCTGTTGAGGGGCTTCTCTGAAAACTTGCTCAAGTCTTTCTTGGACAATGGTGGGGAAATTGGCCGGCGCCATCTCATGGAAGCAGCCATTGCTGACAAAGAGTATCAAGCTCTCTCTGTGGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

207

Amino Acids

23.35

Weight (kDa)

6.1

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 558
AccB7I CCANNNNNTGG 1 cut(s) 568
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 229
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 559
AfaI GTAC 2 cut(s) 349, 404
AfiI CCNNNNNNNGG 1 cut(s) 568
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 2 cut(s) 286, 358
AjnI CCWGG 1 cut(s) 481
AloI GAACNNNNNNTCC 2 cut(s) 213, 245
AluBI AGCT 1 cut(s) 602
AluI AGCT 1 cut(s) 602
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 229
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 1 cut(s) 23
AspLEI GCGC 1 cut(s) 561
AsuHPI GGTGA 4 cut(s) 103, 313, 353, 499
BanI GGYRCC 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 587
BccI CCATC 3 cut(s) 292, 338, 570
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 562
BisI GCNGC 1 cut(s) 576
BlsI GCNGC 1 cut(s) 577
Bme1390I CCNGG 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 560
BmrFI CCNGG 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 365
BpuEI CTTGAG 2 cut(s) 158, 506
BsaHI GRCGYC 1 cut(s) 559
BsaJI CCNNGG 1 cut(s) 482
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse118I RCCGGY 1 cut(s) 555
Bse1I ACTGG 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 2 cut(s) 172, 478
BseLI CCNNNNNNNGG 1 cut(s) 568
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 455
BseXI GCAGC 1 cut(s) 587
BshFI GGCC 1 cut(s) 555
BshNI GGYRCC 1 cut(s) 558
BsiSI CCGG 1 cut(s) 556
BslFI GGGAC 3 cut(s) 114, 263, 461
BslI CCNNNNNNNGG 1 cut(s) 568
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 3 cut(s) 114, 263, 461
BsnI GGCC 1 cut(s) 555
Bsp143I GATC 3 cut(s) 150, 169, 221
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 560
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 1 cut(s) 555
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 555
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 3 cut(s) 150, 169, 221
BssNI GRCGYC 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 483
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 559
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 172, 478
BstH2I RGCGCY 1 cut(s) 562
BstHHI GCGC 1 cut(s) 561
BstKTI GATC 3 cut(s) 153, 172, 224
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 3 cut(s) 150, 169, 221
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 481
BstV1I GCAGC 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 365
BstXI CCANNNNNNTGG 1 cut(s) 85
BsuRI GGCC 1 cut(s) 555
BtsCI GGATG 2 cut(s) 172, 478
BtsI GCAGTG 2 cut(s) 217, 423
BtsIMutI CAGTG 2 cut(s) 217, 423
Cac8I GCNNGC 1 cut(s) 557
CfoI GCGC 1 cut(s) 561
Cfr10I RCCGGY 1 cut(s) 555
CseI GACGC 1 cut(s) 499
Csp6I GTAC 2 cut(s) 348, 403
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 3 cut(s) 135, 204, 568
CviJI RGCY 6 cut(s) 41, 460, 504, 555, 578, 602
CviKI_1 RGCY 6 cut(s) 41, 460, 504, 555, 578, 602
CviQI GTAC 2 cut(s) 348, 403
DdeI CTNAG 1 cut(s) 119
DinI GGCGCC 1 cut(s) 560
DpnI GATC 3 cut(s) 152, 171, 223
DpnII GATC 3 cut(s) 150, 169, 221
DraI TTTAAA 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 481
EgeI GGCGCC 1 cut(s) 560
EheI GGCGCC 1 cut(s) 560
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 3 cut(s) 138, 207, 571
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 3 cut(s) 114, 263, 461
FatI CATG 3 cut(s) 134, 203, 567
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 2 cut(s) 179, 465
Fsp4HI GCNGC 1 cut(s) 576
GlaI GCGC 1 cut(s) 560
GluI GCNGC 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 562
HaeIII GGCC 1 cut(s) 555
HapII CCGG 1 cut(s) 556
HgaI GACGC 1 cut(s) 499
HhaI GCGC 1 cut(s) 561
Hin1I GRCGYC 1 cut(s) 559
Hin1II CATG 3 cut(s) 138, 207, 571
Hin6I GCGC 1 cut(s) 559
HinP1I GCGC 1 cut(s) 559
HinfI GANTC 1 cut(s) 361
HpaII CCGG 1 cut(s) 556
HphI GGTGA 4 cut(s) 103, 313, 353, 499
Hpy166II GTNNAC 2 cut(s) 321, 616
Hpy188I TCNGA 5 cut(s) 115, 160, 240, 332, 511
Hpy188III TCNNGA 2 cut(s) 260, 355
Hpy8I GTNNAC 2 cut(s) 321, 616
HpyAV CCTTC 4 cut(s) 155, 235, 280, 301
HpyCH4V TGCA 2 cut(s) 4, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 559
Hsp92II CATG 3 cut(s) 138, 207, 571
HspAI GCGC 1 cut(s) 559
KasI GGCGCC 1 cut(s) 558
KroI GCCGGC 1 cut(s) 555
KroNI GCCGGC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 3 cut(s) 150, 169, 221
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 6 cut(s) 91, 391, 436, 468, 495, 569
Lsp1109I GCAGC 1 cut(s) 587
MaeIII GTNAC 2 cut(s) 47, 487
MalI GATC 3 cut(s) 152, 171, 223
MboI GATC 3 cut(s) 150, 169, 221
MboII GAAGA 3 cut(s) 137, 370, 482
MluCI AATT 3 cut(s) 23, 83, 549
Mly113I GGCGCC 1 cut(s) 559
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 4 cut(s) 192, 326, 364, 492
MroNI GCCGGC 1 cut(s) 555
MseI TTAA 3 cut(s) 27, 303, 390
MspI CCGG 1 cut(s) 556
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 581
NaeI GCCGGC 1 cut(s) 557
NarI GGCGCC 1 cut(s) 559
NdeII GATC 3 cut(s) 150, 169, 221
NgoMIV GCCGGC 1 cut(s) 555
NlaIII CATG 3 cut(s) 138, 207, 571
NlaIV GGNNCC 1 cut(s) 560
NmuCI GTSAC 2 cut(s) 47, 487
NspI RCATGY 1 cut(s) 207
PciI ACATGT 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 557
PflMI CCANNNNNTGG 1 cut(s) 568
PkrI GCNGC 1 cut(s) 577
PleI GAGTC 1 cut(s) 355
PluTI GGCGCC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 355
PscI ACATGT 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 560
RsaI GTAC 2 cut(s) 349, 404
RsaNI GTAC 2 cut(s) 348, 403
SaqAI TTAA 3 cut(s) 27, 303, 390
SatI GCNGC 1 cut(s) 576
Sau3AI GATC 3 cut(s) 150, 169, 221
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 483
SetI ASST 3 cut(s) 246, 312, 604
SfoI GGCGCC 1 cut(s) 560
SmlI CTYRAG 2 cut(s) 173, 521
SmoI CTYRAG 2 cut(s) 173, 521
Sse9I AATT 3 cut(s) 23, 83, 549
SsiI CCGC 1 cut(s) 89
SspDI GGCGCC 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 481
TaqI TCGA 1 cut(s) 259
TasI AATT 3 cut(s) 23, 83, 549
Tru1I TTAA 3 cut(s) 27, 303, 390
Tru9I TTAA 3 cut(s) 27, 303, 390
TscAI CASTG 2 cut(s) 217, 423
TseFI GTSAC 2 cut(s) 47, 487
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 2 cut(s) 47, 487
TspDTI ATGAA 2 cut(s) 221, 244
TspRI CASTG 2 cut(s) 217, 423
Van91I CCANNNNNTGG 1 cut(s) 568
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.