Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014810

Physical Location & Seq

Genomic Coordinates Forward (+)

15803504 .. 15804997

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G194100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCCAAGAAGATCTCCATCTCCCCTACTTCCTCCTCCCTCTATTCCTTCGGTGATTCCTGCCTTGATCTGTTTTTCCATGTGAAACCACTACGTCACCCACTCGAAGACAACACCATCCAGCAGCAGGCTGATTATAATCATTTTGCCCTTAACTATCTGAAGCAACAGCTGCCTGTGGCCTGGTCCCACAGTCCCCCAATCACCCTCAAGCTCATCTTCAATAACCACCCCAAGACTCTATTATTCAACCTCCCTTCCCTTACCAGCCAAGACGCTGTGGAGAGGCTCCACCATGACCCGGACTATAAGTTGTTACACGACCGGGTTATGGATCTCTTGGCGGAGGGGTTGAAGTCTGATATTGACTTATTGAAGCAGCAGCACAAGCTGGAACTGAAGCCAGATGAAGATGGCGACGAACTTGATGCTGATCTTATGGTACCTGGGGCTGCAGCGTTTGTCATTAACGAAATCTCCGACCACCTCTCCGGGGCCATTTTGCTGCATGAAAGCATTGCAAGGAGGCTTTTCCCACCAGAATCAGATCAATCAGAAGAGTGGGAACGGCTAAGGAAGGCTTTGGTTCCCTTGACCAATTACTACAATCATCGAATCATGTACTTGAATCCCACACAAGAGGTCTCTGTGGTTAAAAAGTGTTTGGAGGAGGTGAAAGCAGCAGCAGAAGGAGGAAGCAATTTAAGAGGCGGCAATGGCATAATAAAGCTGGATGCGCTGCTTCCAAATGAGATCATAAAATATGTAGAAGATGAGGATTTTGGGGAAGCGGCTGAGCTTCAGTGGAAGGCAGTGTTGGGCAAATTTAAAAACTGCTTGGCAGTGTGTAACATCACCACCGATTGCATGGCCATACCAGTCATAGAATTGGCAGTGTGTTTTGGACTTGTGCTGTCTGAACTGATTACAGATCCGGCATGGAAAGGAAAGGTGATCAGTTTTGGTCATTTACCTGATCAGCCGCTGCTGCATTTAATACAAGGCGATGATCTCAAGTCCATGCACGAGTTTATGATGAGGACATGCTTCAGGGAGTCCAACGAGGGTGTTGATTTACGGAAAGTGTTTGATTTGATTCTGGAAGTGGTTGTAAATGAGAACTTGAAGGCAGAGCAGATAATCAAGAAAGCGTTTGTGTTCACCGACTTCAAGGGATTTTTTAGCTGCACCTCGACGATGCCACACATTTTGCTTTGGAATGTTTGTGACTGGAAGTTTCCTCATTCCAAAGAACATCATCCAGGGGTGACGATGGTGAGTGGCTTCTCTGACAATTTGATTAAGTCCTTCTTGGACAATGGTGGGGAAATTGGCCCGCAAGCTCTCATGGAAGCATCCATTGCCGACAAAGAGTATCAAACTTTCTCTGTGGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

467

Amino Acids

52.56

Weight (kDa)

5.23

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014810)

Species	Orthologous Gene IDs
malus_domestica	MD00G1207400.v1.1 MD03G1055000.v1.1 MD04G1053500.v1.1 MD06G1198700.v1.1 MD07G1028900.v1.1 MD12G1072700.v1.1
prunus_persica	Prupe.1G152600_v2.0.a1 Prupe.2G155300_v2.0.a1 Prupe.5G035500_v2.0.a1 Prupe.5G035900_v2.0.a1 Prupe.5G194100_v2.0.a1 Prupe.8G033200_v2.0.a1 Prupe.8G043600_v2.0.a1
pyrus_communis	pycom04g04610 pycom12g06140 pycom12g06180 pycom15g36970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
Acc65I	GGTACC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	442
AciI	CCGC	5 cut(s)	344, 711, 791, 983, 1337
AclWI	GGATC	2 cut(s)	342, 926
AcoI	YGGCCR	2 cut(s)	3, 870
AcsI	RAATTY	1 cut(s)	824
AcuI	CTGAAG	4 cut(s)	182, 419, 785, 1033
AfaI	GTAC	2 cut(s)	444, 623
AfiI	CCNNNNNNNGG	4 cut(s)	127, 301, 331, 493
AgsI	TTSAA	7 cut(s)	223, 250, 355, 376, 628, 1126, 1171
AjnI	CCWGG	3 cut(s)	182, 445, 1261
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
AluBI	AGCT	7 cut(s)	172, 214, 391, 730, 799, 1185, 1343
AluI	AGCT	7 cut(s)	172, 214, 391, 730, 799, 1185, 1343
Alw26I	GTCTC	1 cut(s)	649
AlwI	GGATC	2 cut(s)	342, 926
AlwNI	CAGNNNCTG	1 cut(s)	985
AoxI	GGCC	5 cut(s)	3, 180, 495, 870, 1333
ApoI	RAATTY	1 cut(s)	824
Asp718I	GGTACC	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	3 cut(s)	186, 495, 1334
AsuC2I	CCSGG	3 cut(s)	302, 326, 493
AsuHPI	GGTGA	9 cut(s)	65, 89, 196, 685, 847, 964, 1153, 1279, 1288
AvaII	GGWCC	1 cut(s)	186
BalI	TGGCCA	2 cut(s)	5, 872
BanI	GGYRCC	1 cut(s)	442
BauI	CACGAG	1 cut(s)	1025
BbsI	GAAGAC	1 cut(s)	114
BccI	CCATC	4 cut(s)	26, 125, 407, 1267
BceAI	ACGGC	1 cut(s)	584
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	3 cut(s)	184, 447, 1263
BclI	TGATCA	2 cut(s)	954, 976
BcnI	CCSGG	3 cut(s)	302, 326, 493
BcoDI	GTCTC	1 cut(s)	649
BfmI	CTRYAG	1 cut(s)	453
BglII	AGATCT	1 cut(s)	12
BlpI	GCTNAGC	1 cut(s)	795
Bme1390I	CCNGG	6 cut(s)	184, 302, 326, 447, 493, 1263
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	3 cut(s)	186, 495, 1334
BmiI	GGNNCC	5 cut(s)	188, 290, 444, 496, 588
BmrFI	CCNGG	6 cut(s)	184, 302, 326, 447, 493, 1263
BmsI	GCATC	4 cut(s)	418, 724, 1188, 1364
BpiI	GAAGAC	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	572
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	2 cut(s)	194, 998
BpuMI	CCSGG	3 cut(s)	302, 326, 493
BsaBI	GATNNNNATC	3 cut(s)	17, 138, 432
BsaI	GGTCTC	1 cut(s)	649
BsaJI	CCNNGG	3 cut(s)	446, 492, 1262
BsaXI	ACNNNNNCTCC	4 cut(s)	461, 473, 491, 503
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 301, 331, 493
Bse1I	ACTGG	2 cut(s)	878, 1235
Bse3DI	GCAATG	3 cut(s)	516, 721, 1359
Bse8I	GATNNNNATC	3 cut(s)	17, 138, 432
BseBI	CCWGG	3 cut(s)	184, 447, 1263
BseDI	CCNNGG	3 cut(s)	446, 492, 1262
BseGI	GGATG	4 cut(s)	117, 739, 1258, 1355
BseJI	GATNNNNATC	3 cut(s)	17, 138, 432
BseLI	CCNNNNNNNGG	4 cut(s)	127, 301, 331, 493
BseMI	GCAATG	3 cut(s)	516, 721, 1359
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	2 cut(s)	878, 1235
BseRI	GAGGAG	2 cut(s)	25, 683
BsgI	GTGCAG	1 cut(s)	1171
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	5 cut(s)	5, 182, 497, 872, 1335
BshNI	GGYRCC	1 cut(s)	442
BsiEI	CGRYCG	1 cut(s)	325
BsiSI	CCGG	4 cut(s)	302, 325, 492, 935
BslFI	GGGAC	2 cut(s)	172, 180
BslI	CCNNNNNNNGG	4 cut(s)	127, 301, 331, 493
BsmAI	GTCTC	1 cut(s)	649
BsmFI	GGGAC	2 cut(s)	172, 180
BsnI	GGCC	5 cut(s)	5, 182, 497, 872, 1335
Bso31I	GGTCTC	1 cut(s)	649
Bsp1720I	GCTNAGC	1 cut(s)	795
BspACI	CCGC	5 cut(s)	344, 711, 791, 983, 1337
BspANI	GGCC	5 cut(s)	5, 182, 497, 872, 1335
BspCNI	CTCAG	1 cut(s)	787
BspLI	GGNNCC	5 cut(s)	188, 290, 444, 496, 588
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	2 cut(s)	342, 926
BspT107I	GGYRCC	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	649
BsrDI	GCAATG	3 cut(s)	516, 721, 1359
BsrI	ACTGG	2 cut(s)	878, 1235
BssECI	CCNNGG	3 cut(s)	446, 492, 1262
BssSI	CACGAG	1 cut(s)	1025
Bst2BI	CACGAG	1 cut(s)	1025
Bst2UI	CCWGG	3 cut(s)	184, 447, 1263
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	552
BstAPI	GCANNNNNTGC	2 cut(s)	172, 1361
BstC8I	GCNNGC	3 cut(s)	129, 1337, 1341
BstDEI	CTNAG	2 cut(s)	572, 795
BstF5I	GGATG	4 cut(s)	117, 739, 1258, 1355
BstHHI	GCGC	1 cut(s)	739
BstMAI	GTCTC	1 cut(s)	649
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	6 cut(s)	172, 388, 717, 736, 988, 1361
BstNI	CCWGG	3 cut(s)	184, 447, 1263
BstNSI	RCATGY	1 cut(s)	1047
BstSCI	CCNGG	6 cut(s)	182, 300, 324, 445, 491, 1261
BstSFI	CTRYAG	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	3 cut(s)	12, 334, 931
BstYI	RGATCY	3 cut(s)	12, 334, 931
BsuRI	GGCC	5 cut(s)	5, 182, 497, 872, 1335
BtgZI	GCGATG	1 cut(s)	1020
BtsCI	GGATG	4 cut(s)	117, 739, 1258, 1355
BtsI	GCAGTG	3 cut(s)	819, 849, 900
BtsIMutI	CAGTG	4 cut(s)	809, 819, 849, 900
Cac8I	GCNNGC	3 cut(s)	129, 1337, 1341
CaiI	CAGNNNCTG	1 cut(s)	985
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	3 cut(s)	186, 495, 1334
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	443, 622
CspCI	CAANNNNNGTGG	2 cut(s)	1191, 1226
CviAII	CATG	9 cut(s)	80, 296, 509, 619, 868, 939, 1021, 1044, 1348
CviQI	GTAC	2 cut(s)	443, 622
DdeI	CTNAG	2 cut(s)	572, 795
DraI	TTTAAA	1 cut(s)	829
EaeI	YGGCCR	2 cut(s)	3, 870
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	186
Eco57I	CTGAAG	4 cut(s)	182, 419, 785, 1033
EcoRII	CCWGG	3 cut(s)	182, 445, 1261
FaeI	CATG	9 cut(s)	83, 299, 512, 622, 871, 942, 1024, 1047, 1351
FalI	AAGNNNNNCTT	6 cut(s)	203, 235, 565, 597, 1295, 1327
FaqI	GGGAC	2 cut(s)	172, 180
FatI	CATG	9 cut(s)	79, 295, 508, 618, 867, 938, 1020, 1043, 1347
FauI	CCCGC	1 cut(s)	1344
FbaI	TGATCA	2 cut(s)	954, 976
FokI	GGATG	4 cut(s)	104, 746, 1245, 1342
GlaI	GCGC	1 cut(s)	738
HaeIII	GGCC	5 cut(s)	5, 182, 497, 872, 1335
HapII	CCGG	4 cut(s)	302, 325, 492, 935
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	739
Hin1II	CATG	9 cut(s)	83, 299, 512, 622, 871, 942, 1024, 1047, 1351
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	1 cut(s)	1396
HindII	GTYRAC	1 cut(s)	1396
HinfI	GANTC	7 cut(s)	56, 238, 542, 615, 628, 1055, 1096
HpaII	CCGG	4 cut(s)	302, 325, 492, 935
HphI	GGTGA	9 cut(s)	65, 89, 196, 685, 847, 964, 1153, 1279, 1288
Hpy166II	GTNNAC	2 cut(s)	1161, 1396
Hpy188I	TCNGA	7 cut(s)	162, 361, 481, 547, 556, 919, 1291
Hpy188III	TCNNGA	2 cut(s)	1100, 1144
Hpy8I	GTNNAC	2 cut(s)	1161, 1396
Hpy99I	CGWCG	2 cut(s)	422, 1198
HpyAV	CCTTC	7 cut(s)	58, 267, 571, 683, 802, 1120, 1318
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	7 cut(s)	455, 508, 521, 867, 991, 1024, 1188
HpyF10VI	GCNNNNNNNGC	6 cut(s)	172, 388, 717, 736, 988, 1361
HpyF3I	CTNAG	2 cut(s)	572, 795
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	9 cut(s)	83, 299, 512, 622, 871, 942, 1024, 1047, 1351
HspAI	GCGC	1 cut(s)	737
KpnI	GGTACC	1 cut(s)	446
Ksp22I	TGATCA	2 cut(s)	954, 976
LmnI	GCTCC	1 cut(s)	294
LweI	GCATC	4 cut(s)	418, 724, 1188, 1364
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	5 cut(s)	95, 315, 848, 1226, 1267
MboII	GAAGA	6 cut(s)	22, 119, 211, 422, 569, 782
MflI	RGATCY	3 cut(s)	12, 334, 931
MlsI	TGGCCA	2 cut(s)	5, 872
MluCI	AATT	6 cut(s)	598, 700, 824, 887, 1294, 1329
MluNI	TGGCCA	2 cut(s)	5, 872
MlyI	GAGTC	2 cut(s)	232, 1064
MmeI	TCCRAC	2 cut(s)	504, 1083
Mox20I	TGGCCA	2 cut(s)	5, 872
MscI	TGGCCA	2 cut(s)	5, 872
MseI	TTAA	7 cut(s)	153, 468, 654, 704, 828, 995, 1302
Msp20I	TGGCCA	2 cut(s)	5, 872
MspA1I	CMGCKG	2 cut(s)	172, 985
MspI	CCGG	4 cut(s)	302, 325, 492, 935
MspR9I	CCNGG	6 cut(s)	184, 302, 326, 447, 493, 1263
MvaI	CCWGG	3 cut(s)	184, 447, 1263
MwoI	GCNNNNNNNGC	6 cut(s)	172, 388, 717, 736, 988, 1361
NciI	CCSGG	3 cut(s)	302, 326, 493
NlaIII	CATG	9 cut(s)	83, 299, 512, 622, 871, 942, 1024, 1047, 1351
NlaIV	GGNNCC	5 cut(s)	188, 290, 444, 496, 588
NmuCI	GTSAC	3 cut(s)	95, 1226, 1267
NspI	RCATGY	1 cut(s)	1047
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PfeI	GAWTC	5 cut(s)	56, 542, 615, 628, 1096
PleI	GAGTC	2 cut(s)	232, 1063
PpsI	GAGTC	2 cut(s)	232, 1063
PsiI	TTATAA	1 cut(s)	138
Psp6I	CCWGG	3 cut(s)	182, 445, 1261
PspGI	CCWGG	3 cut(s)	182, 445, 1261
PspN4I	GGNNCC	5 cut(s)	188, 290, 444, 496, 588
PspPI	GGNCC	3 cut(s)	186, 495, 1334
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	985
PsuI	RGATCY	3 cut(s)	12, 334, 931
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	444, 623
RsaNI	GTAC	2 cut(s)	443, 622
SaqAI	TTAA	7 cut(s)	153, 468, 654, 704, 828, 995, 1302
Sau96I	GGNCC	3 cut(s)	186, 495, 1334
SchI	GAGTC	2 cut(s)	232, 1064
ScrFI	CCNGG	6 cut(s)	184, 302, 326, 447, 493, 1263
SfaNI	GCATC	4 cut(s)	418, 724, 1188, 1364
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	209, 1013
SmoI	CTYRAG	2 cut(s)	209, 1013
Sse9I	AATT	6 cut(s)	598, 700, 824, 887, 1294, 1329
SsiI	CCGC	5 cut(s)	344, 711, 791, 983, 1337
StyD4I	CCNGG	6 cut(s)	182, 300, 324, 445, 491, 1261
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	105, 613, 1193
TasI	AATT	6 cut(s)	598, 700, 824, 887, 1294, 1329
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	3 cut(s)	714, 794, 985
TfiI	GAWTC	5 cut(s)	56, 542, 615, 628, 1096
Tru1I	TTAA	7 cut(s)	153, 468, 654, 704, 828, 995, 1302
Tru9I	TTAA	7 cut(s)	153, 468, 654, 704, 828, 995, 1302
TscAI	CASTG	4 cut(s)	809, 819, 849, 900
TseFI	GTSAC	3 cut(s)	95, 1226, 1267
Tsp45I	GTSAC	3 cut(s)	95, 1226, 1267
TspDTI	ATGAA	2 cut(s)	423, 525
TspGWI	ACGGA	1 cut(s)	1093
TspRI	CASTG	4 cut(s)	809, 819, 849, 900
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	1 cut(s)	824
XceI	RCATGY	1 cut(s)	1047
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.