Prupe.1G152600_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014810
Physical Location & Seq
Reverse (-)
12047283 .. 12048451
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G152600.1

Sequence Viewer

Length: 921 bp
ATGCGTATAGAAGAATGGGAACGGCTAAGGAAGGAGTTTTTGGAGCCCTTGACGGAGTATAGTCGTCAACGCATGCGTCTTTATCTCAATCAAATGCCCTGTGTGATCAAGAAGTATTTGGAGGAGGTGAAAGCAGGCGGCAGCATCATAAAGTCGGATACATTGCTTCCACATTATATCATAAGATATGTAAAAGATAAGGATGTTGGGGAAGCAGCTGAGATTCAGTGGAAGGAAATGATGGAGAACATATACCAAGGGGAGGAGAACAAATTTAAGAACTGCTTGGCAGTGTGTAATATCACCTACGCCATGAGCGCAGCATCAATCACAGAATTGGCGGCAAGTTTGGGAATTTTGGTGTCTGAATTGAGTGAAGAGCCGGCATGGAAAGGAAAGGTGATCACTCTGGGTCCATTGCGTGATAAGCTGCCTCTGCTGCATTCGATACAAGGCAGTGATCTCAAGTCCAGGTACGACTTTGTGATCAGGGCATGCAGCAACAGCTACAGCCAGGGTGTTGATTTTGATCAGGTGTGTGATTTGATTCTGGAAGTGGCTGTGAACAATAACTTGAAGGCGGAGCAGATGATCAAGAAGGTGTTTCTGTTCACCGACTCCGTAAGATTTGGTGGCTGCAGCACATCCTGGAAGACTTTGTATGAGGCAAAACGCAGCAAGTTTAAGGAGCAAGGTTACGGGGATGATGCGATGCCACACATTTTGTTTTGGAATATTTGGGACATAGCGGGGTTTATGCATCGTGTAGAAGAACCTCATCCAGGAGTGACCCTCTTGAGGGGAAACTCGAACACATTGATCAAGTCCTTCTTGGATAATGGTGGGGAAATTAGCCGGCATCAGATCATGGAAGCAGCCATTGCCAACAAAGAGTATCAAACTCTCTCTGTGGTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

307

Amino Acids

35.04

Weight (kDa)

5.96

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 915
AciI CCGC 4 cut(s) 138, 341, 581, 749
AcsI RAATTY 2 cut(s) 272, 354
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 4 cut(s) 262, 782, 798, 799
AgsI TTSAA 1 cut(s) 577
AjnI CCWGG 4 cut(s) 470, 513, 647, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 3 cut(s) 218, 430, 507
AluI AGCT 3 cut(s) 218, 430, 507
ApoI RAATTY 2 cut(s) 272, 354
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 4 cut(s) 139, 295, 412, 604
AvaII GGWCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 659
BccI CCATC 1 cut(s) 235
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 4 cut(s) 472, 515, 649, 783
BciVI GTATCC 1 cut(s) 151
BclI TGATCA 6 cut(s) 105, 402, 486, 529, 591, 819
BfmI CTRYAG 2 cut(s) 508, 637
BfuI GTATCC 1 cut(s) 151
Bme1390I CCNGG 4 cut(s) 472, 515, 649, 783
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 45, 414
BmrFI CCNGG 4 cut(s) 472, 515, 649, 783
BmsI GCATC 6 cut(s) 153, 332, 697, 702, 769, 868
BpiI GAAGAC 1 cut(s) 659
BplI GAGNNNNNCTC 2 cut(s) 777, 809
Bpu10I CCTNAGC 1 cut(s) 26
BpuEI CTTGAG 2 cut(s) 449, 817
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 256, 514
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 782, 798, 799
Bse118I RCCGGY 2 cut(s) 382, 855
Bse3DI GCAATG 3 cut(s) 161, 416, 879
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 4 cut(s) 472, 515, 649, 783
BseDI CCNNGG 2 cut(s) 256, 514
BseGI GGATG 4 cut(s) 208, 644, 709, 778
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 4 cut(s) 262, 782, 798, 799
BseMI GCAATG 3 cut(s) 161, 416, 879
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 137, 278
BsiSI CCGG 2 cut(s) 383, 856
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 4 cut(s) 262, 782, 798, 799
BsmFI GGGAC 1 cut(s) 755
BsmI GAATGC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 8 cut(s) 105, 402, 460, 486, 529, 591, 819, 864
BspACI CCGC 4 cut(s) 138, 341, 581, 749
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 45, 414
BspMAI CTGCAG 1 cut(s) 641
BspQI GCTCTTC 1 cut(s) 372
BsrDI GCAATG 3 cut(s) 161, 416, 879
BsrFI RCCGGY 2 cut(s) 382, 855
BssAI RCCGGY 2 cut(s) 382, 855
BssECI CCNNGG 2 cut(s) 256, 514
BssMI GATC 8 cut(s) 105, 402, 460, 486, 529, 591, 819, 864
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 4 cut(s) 472, 515, 649, 783
Bst6I CTCTTC 1 cut(s) 372
BstAPI GCANNNNNTGC 1 cut(s) 881
BstC8I GCNNGC 5 cut(s) 74, 136, 384, 496, 857
BstDEI CTNAG 2 cut(s) 26, 219
BstENI CCTNNNNNAGG 1 cut(s) 780
BstF5I GGATG 4 cut(s) 208, 644, 709, 778
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 8 cut(s) 108, 405, 463, 489, 532, 594, 822, 867
BstMBI GATC 8 cut(s) 105, 402, 460, 486, 529, 591, 819, 864
BstMWI GCNNNNNNNGC 6 cut(s) 317, 427, 436, 439, 504, 881
BstNI CCWGG 4 cut(s) 472, 515, 649, 783
BstNSI RCATGY 2 cut(s) 76, 498
BstSCI CCNGG 4 cut(s) 470, 513, 647, 781
BstSFI CTRYAG 2 cut(s) 508, 637
BstV2I GAAGAC 1 cut(s) 659
BsuI GTATCC 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 725
BtsCI GGATG 4 cut(s) 208, 644, 709, 778
BtsI GCAGTG 2 cut(s) 297, 463
BtsIMutI CAGTG 3 cut(s) 233, 297, 463
Cac8I GCNNGC 5 cut(s) 74, 136, 384, 496, 857
CfoI GCGC 1 cut(s) 320
Cfr10I RCCGGY 2 cut(s) 382, 855
Cfr13I GGNCC 1 cut(s) 413
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 475
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 5 cut(s) 73, 313, 387, 495, 868
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 2 cut(s) 26, 219
DpnI GATC 8 cut(s) 107, 404, 462, 488, 531, 593, 821, 866
DpnII GATC 8 cut(s) 105, 402, 460, 486, 529, 591, 819, 864
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 780
EcoRII CCWGG 4 cut(s) 470, 513, 647, 781
EcoT14I CCWWGG 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 762
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 5 cut(s) 76, 316, 390, 498, 871
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 815, 847
FaqI GGGAC 1 cut(s) 755
FatI CATG 5 cut(s) 72, 312, 386, 494, 867
FauI CCCGC 1 cut(s) 742
FbaI TGATCA 6 cut(s) 105, 402, 486, 529, 591, 819
FblI GTMKAC 1 cut(s) 915
FokI GGATG 4 cut(s) 215, 631, 716, 765
FriOI GRGCYC 1 cut(s) 48
GlaI GCGC 1 cut(s) 319
HapII CCGG 2 cut(s) 383, 856
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 320
Hin1II CATG 5 cut(s) 76, 316, 390, 498, 871
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HincII GTYRAC 2 cut(s) 68, 916
HindII GTYRAC 2 cut(s) 68, 916
HinfI GANTC 3 cut(s) 223, 547, 617
HpaII CCGG 2 cut(s) 383, 856
HphI GGTGA 4 cut(s) 139, 295, 412, 604
Hpy166II GTNNAC 4 cut(s) 68, 565, 612, 916
Hpy188I TCNGA 3 cut(s) 157, 367, 864
Hpy188III TCNNGA 4 cut(s) 109, 551, 595, 796
Hpy8I GTNNAC 4 cut(s) 68, 565, 612, 916
HpyAV CCTTC 5 cut(s) 25, 226, 571, 592, 838
HpyCH4V TGCA 4 cut(s) 442, 498, 639, 760
HpyF10VI GCNNNNNNNGC 6 cut(s) 317, 427, 436, 439, 504, 881
HpyF3I CTNAG 2 cut(s) 26, 219
Hsp92II CATG 5 cut(s) 76, 316, 390, 498, 871
HspAI GCGC 1 cut(s) 318
KroI GCCGGC 2 cut(s) 382, 855
KroNI GCCGGC 2 cut(s) 384, 857
Ksp22I TGATCA 6 cut(s) 105, 402, 486, 529, 591, 819
Kzo9I GATC 8 cut(s) 105, 402, 460, 486, 529, 591, 819, 864
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 3 cut(s) 43, 583, 688
LweI GCATC 6 cut(s) 153, 332, 697, 702, 769, 868
MaeIII GTNAC 2 cut(s) 695, 787
MalI GATC 8 cut(s) 107, 404, 462, 488, 531, 593, 821, 866
MboI GATC 8 cut(s) 105, 402, 460, 486, 529, 591, 819, 864
MboII GAAGA 4 cut(s) 23, 389, 664, 782
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 5 cut(s) 272, 335, 354, 368, 849
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 8 cut(s) 115, 118, 256, 444, 658, 786, 792, 803
Mph1103I ATGCAT 1 cut(s) 762
MroNI GCCGGC 2 cut(s) 382, 855
MseI TTAA 2 cut(s) 276, 684
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 383, 856
MspR9I CCNGG 4 cut(s) 472, 515, 649, 783
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 4 cut(s) 472, 515, 649, 783
MwoI GCNNNNNNNGC 6 cut(s) 317, 427, 436, 439, 504, 881
NaeI GCCGGC 2 cut(s) 384, 857
NdeII GATC 8 cut(s) 105, 402, 460, 486, 529, 591, 819, 864
NgoMIV GCCGGC 2 cut(s) 382, 855
NlaIII CATG 5 cut(s) 76, 316, 390, 498, 871
NlaIV GGNNCC 2 cut(s) 45, 414
NmuCI GTSAC 1 cut(s) 787
NsiI ATGCAT 1 cut(s) 762
NspI RCATGY 2 cut(s) 76, 498
PaeI GCATGC 2 cut(s) 76, 498
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 1 cut(s) 442
PdiI GCCGGC 2 cut(s) 384, 857
PfeI GAWTC 2 cut(s) 223, 547
PfoI TCCNGGA 2 cut(s) 647, 781
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
Psp6I CCWGG 4 cut(s) 470, 513, 647, 781
PspGI CCWGG 4 cut(s) 470, 513, 647, 781
PspN4I GGNNCC 2 cut(s) 45, 414
PspPI GGNCC 1 cut(s) 413
PstI CTGCAG 1 cut(s) 641
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SalI GTCGAC 1 cut(s) 914
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 276, 684
Sau3AI GATC 8 cut(s) 105, 402, 460, 486, 529, 591, 819, 864
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 4 cut(s) 472, 515, 649, 783
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 6 cut(s) 153, 332, 697, 702, 769, 868
SfcI CTRYAG 2 cut(s) 508, 637
SinI GGWCC 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 464, 796
SmoI CTYRAG 2 cut(s) 464, 796
SphI GCATGC 2 cut(s) 76, 498
Sse9I AATT 5 cut(s) 272, 335, 354, 368, 849
SsiI CCGC 4 cut(s) 138, 341, 581, 749
SspI AATATT 1 cut(s) 736
StyD4I CCNGG 4 cut(s) 470, 513, 647, 781
StyI CCWWGG 1 cut(s) 256
TaqI TCGA 3 cut(s) 446, 809, 915
TasI AATT 5 cut(s) 272, 335, 354, 368, 849
TauI GCSGC 2 cut(s) 141, 344
TfiI GAWTC 2 cut(s) 223, 547
Tru1I TTAA 2 cut(s) 276, 684
Tru9I TTAA 2 cut(s) 276, 684
TscAI CASTG 3 cut(s) 233, 297, 463
TseFI GTSAC 1 cut(s) 787
Tsp45I GTSAC 1 cut(s) 787
TspGWI ACGGA 2 cut(s) 68, 610
TspRI CASTG 3 cut(s) 233, 297, 463
VpaK11BI GGWCC 1 cut(s) 413
XagI CCTNNNNNAGG 1 cut(s) 780
XapI RAATTY 2 cut(s) 272, 354
XceI RCATGY 2 cut(s) 76, 498
XmiI GTMKAC 1 cut(s) 915
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.