Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0018116

Physical Location & Seq

Genomic Coordinates Forward (+)

9461459 .. 9462054

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1090400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGCTACTCAAGGTCAAGTCATCACTTGCAAAGCGGCGGTGGCCTGGGAACCCAATAAGCCGTTGTTGATCGAAGACGTGCAGGTGGCTCCGCCGGAGGCCGGAGAGGTCCGGGTCAAGATTCTTTACACCGCTCTCTGCCACACAGACGCTTATATACCTGGAGCAGGAGATAAAAATAATAATAAAAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

66

Amino Acids

6.99

Weight (kDa)

5.62

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018116)

Species	Orthologous Gene IDs
malus_domestica	MD07G1090400.v1.1
pyrus_communis	pycom05g00770 pycom10g00870
rosa_chinensis	RchiOBHm_Chr6g0277241 RchiOBHm_Chr7g0187481
rosa_multiflora	Rmu_co8098730.1_g000001 Rmu_sc0000030.1_g000037 Rmu_sc0000469.1_g000001 Rmu_sc0006941.1_g000001 Rmu_sc0006941.1_g000002 Rmu_sc0034709.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	73
Acc36I	ACCTGC	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	134
AciI	CCGC	4 cut(s)	35, 38, 92, 132
AfiI	CCNNNNNNNGG	2 cut(s)	101, 167
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	44, 160
AoxI	GGCC	2 cut(s)	42, 99
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	46, 162
BcnI	CCSGG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	3 cut(s)	46, 113, 162
Bme18I	GGWCC	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	51, 90
BmrFI	CCNGG	3 cut(s)	46, 113, 162
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 167
BseBI	CCWGG	2 cut(s)	46, 162
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	101, 167
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	44, 101
BsiSI	CCGG	3 cut(s)	95, 102, 112
BslI	CCNNNNNNNGG	2 cut(s)	101, 167
BsnI	GGCC	2 cut(s)	44, 101
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	4 cut(s)	35, 38, 92, 132
BspANI	GGCC	2 cut(s)	44, 101
BspLI	GGNNCC	2 cut(s)	51, 90
BspMI	ACCTGC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	46, 162
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	2 cut(s)	46, 162
BstSCI	CCNGG	3 cut(s)	44, 111, 160
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	44, 101
BtrI	CACGTC	1 cut(s)	79
BveI	ACCTGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	109
CseI	GACGC	1 cut(s)	158
CviJI	RGCY	5 cut(s)	5, 44, 61, 89, 101
CviKI_1	RGCY	5 cut(s)	5, 44, 61, 89, 101
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	109
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	44, 160
FaiI	YATR	2 cut(s)	156, 158
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	44, 101
HapII	CCGG	3 cut(s)	95, 102, 112
HgaI	GACGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	3 cut(s)	95, 102, 112
Hpy188III	TCNNGA	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	30, 82
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	94, 164
LpnPI	CCDG	9 cut(s)	31, 58, 68, 108, 115, 125, 147, 153, 174
MaeII	ACGT	1 cut(s)	78
MalI	GATC	1 cut(s)	71
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	86
MnlI	CCTC	2 cut(s)	91, 100
MseI	TTAA	1 cut(s)	196
MspI	CCGG	3 cut(s)	95, 102, 112
MspR9I	CCNGG	3 cut(s)	46, 113, 162
MvaI	CCWGG	2 cut(s)	46, 162
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	69
NlaIV	GGNNCC	2 cut(s)	51, 90
PaqCI	CACCTGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	44, 160
PspGI	CCWGG	2 cut(s)	44, 160
PspN4I	GGNNCC	2 cut(s)	51, 90
PspPI	GGNCC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	196
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	3 cut(s)	46, 113, 162
SetI	ASST	5 cut(s)	16, 81, 87, 111, 163
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SsiI	CCGC	4 cut(s)	35, 38, 92, 132
SspI	AATATT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	44, 111, 160
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	72
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	109
XagI	CCTNNNNNAGG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.