Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018116

Physical Location & Seq

Genomic Coordinates Reverse (-)

39706312 .. 39706893

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24871

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTGGATTGTAGCAGCGGTGGCCTGGGAAGCTGGGAAGCCGCTGGTTATTGAGGAAGTGGAGGTGGCACCACCACAGAAACATGAAGTACGCTTGAAGATCCTCTTTACCGCTCTTTGCCACACGGATATATACTTCTGTGAAGCGAAGATGTTATATGTTGGACAAAATCCACTGTTCCCTCGGATTTTAGGTCATGAACCTGGAGGAATCGTGGAAAGCATAGGCCAGGGTGTAACTGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

82

Amino Acids

9.1

Weight (kDa)

5.2

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	27 - 81	2.6e-08	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018116)

Species	Orthologous Gene IDs
malus_domestica	MD07G1090400.v1.1
pyrus_communis	pycom05g00770 pycom10g00870
rosa_chinensis	RchiOBHm_Chr6g0277241 RchiOBHm_Chr7g0187481
rosa_multiflora	Rmu_co8098730.1_g000001 Rmu_sc0000030.1_g000037 Rmu_sc0000469.1_g000001 Rmu_sc0006941.1_g000001 Rmu_sc0006941.1_g000002 Rmu_sc0034709.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	3 cut(s)	17, 41, 111
AclWI	GGATC	1 cut(s)	94
AfaI	GTAC	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	3 cut(s)	23, 202, 228
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	2 cut(s)	21, 226
ApeKI	GCWGC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	26
BciT130I	CCWGG	3 cut(s)	25, 204, 230
BisI	GCNGC	2 cut(s)	15, 41
BlsI	GCNGC	2 cut(s)	16, 42
Bme1390I	CCNGG	3 cut(s)	25, 204, 230
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	3 cut(s)	25, 204, 230
BpmI	CTGGAG	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	24, 182, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
BseBI	CCWGG	3 cut(s)	25, 204, 230
BseDI	CCNNGG	3 cut(s)	24, 182, 229
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	32
BshFI	GGCC	2 cut(s)	23, 228
BshNI	GGYRCC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	23, 228
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	3 cut(s)	17, 41, 111
BspANI	GGCC	2 cut(s)	23, 228
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	67
BsrBI	CCGCTC	1 cut(s)	113
BssECI	CCNNGG	3 cut(s)	24, 182, 229
BssMI	GATC	1 cut(s)	99
Bst2UI	CCWGG	3 cut(s)	25, 204, 230
Bst4CI	ACNGT	1 cut(s)	177
BstKTI	GATC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 29
BstNI	CCWGG	3 cut(s)	25, 204, 230
BstSCI	CCNGG	3 cut(s)	23, 202, 228
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	23, 228
BtsIMutI	CAGTG	1 cut(s)	173
CciI	TCATGA	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	2 cut(s)	83, 197
CviJI	RGCY	4 cut(s)	23, 32, 40, 228
CviKI_1	RGCY	4 cut(s)	23, 32, 40, 228
CviQI	GTAC	1 cut(s)	89
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
EcoRII	CCWGG	3 cut(s)	23, 202, 228
FaeI	CATG	2 cut(s)	86, 200
FaiI	YATR	7 cut(s)	84, 131, 133, 157, 159, 198, 224
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	2 cut(s)	82, 196
Fnu4HI	GCNGC	2 cut(s)	15, 41
Fsp4HI	GCNGC	2 cut(s)	15, 41
GluI	GCNGC	2 cut(s)	15, 41
GsaI	CCCAGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	23, 228
Hin1II	CATG	2 cut(s)	86, 200
HinfI	GANTC	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 29
Hsp92II	CATG	2 cut(s)	86, 200
Kzo9I	GATC	1 cut(s)	99
LpnPI	CCDG	8 cut(s)	10, 18, 29, 37, 189, 215, 216, 242
Lsp1109I	GCAGC	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	101
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	1 cut(s)	99
MboII	GAAGA	2 cut(s)	109, 160
MflI	RGATCY	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	5 cut(s)	46, 55, 113, 192, 200
MspA1I	CMGCKG	2 cut(s)	17, 43
MspR9I	CCNGG	3 cut(s)	25, 204, 230
MvaI	CCWGG	3 cut(s)	25, 204, 230
MwoI	GCNNNNNNNGC	2 cut(s)	20, 29
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	2 cut(s)	86, 200
NlaIV	GGNNCC	1 cut(s)	69
PagI	TCATGA	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	16, 42
Psp6I	CCWGG	3 cut(s)	23, 202, 228
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	3 cut(s)	23, 202, 228
PspN4I	GGNNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SatI	GCNGC	2 cut(s)	15, 41
Sau3AI	GATC	1 cut(s)	99
ScrFI	CCNGG	3 cut(s)	25, 204, 230
SetI	ASST	4 cut(s)	34, 66, 196, 205
SsiI	CCGC	3 cut(s)	17, 41, 111
StyD4I	CCNGG	3 cut(s)	23, 202, 228
TaaI	ACNGT	1 cut(s)	177
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	210
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	99, 213
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.