RchiOBHm_Chr7g0187481

Alcohol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018116
Physical Location & Seq
Forward (+)
7290640 .. 7291302
663 bp
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UTR
Exon/CDS
Intron
PRQ16735

Sequence Viewer

Length: 210 bp
ATGGTGGTCGATCATGAAGCTGCTGTTGTTTGGGGTCCTGAGGAGCCTTTTGTGATGGAACAAGTTCAAGTTGACCCGCCGCAGAAACTGGAGGTCCGAGTCAAGATCCTCTTCACCTCAATCTGTCACACTGATCTTAGTGCTTGGAAAGGAGAGAATGAAGCTCAACGAGCGTTTCCTCGAATTCTAGGTCATGAAGCAGCCGGGTAA

Protein Analysis

69

Amino Acids

7.74

Weight (kDa)

4.96

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 30 - 69 1.9e-07 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 80
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 183
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 2 cut(s) 20, 164
AluI AGCT 2 cut(s) 20, 164
AlwI GGATC 1 cut(s) 100
AlwNI CAGNNNCTG 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 20, 200
ApoI RAATTY 1 cut(s) 183
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 35, 94
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 35, 94
AxyI CCTNAGG 1 cut(s) 39
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 49
BcnI CCSGG 1 cut(s) 205
BfaI CTAG 1 cut(s) 188
BisI GCNGC 3 cut(s) 21, 80, 201
BlsI GCNGC 3 cut(s) 22, 81, 202
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 2 cut(s) 35, 94
BmgT120I GGNCC 2 cut(s) 35, 94
BmiI GGNNCC 2 cut(s) 36, 45
BmrFI CCNGG 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 93
Bse21I CCTNAGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 204
Bsp143I GATC 3 cut(s) 10, 105, 133
BspACI CCGC 2 cut(s) 77, 80
BspCNI CTCAG 1 cut(s) 31
BspHI TCATGA 2 cut(s) 13, 193
BspLI GGNNCC 2 cut(s) 36, 45
BspPI GGATC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 93
BssMI GATC 3 cut(s) 10, 105, 133
Bst6I CTCTTC 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 39, 137
BstKTI GATC 3 cut(s) 13, 108, 136
BstMBI GATC 3 cut(s) 10, 105, 133
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 88
CciI TCATGA 2 cut(s) 13, 193
Cfr13I GGNCC 2 cut(s) 35, 94
CviAII CATG 2 cut(s) 14, 194
CviJI RGCY 4 cut(s) 20, 46, 164, 203
CviKI_1 RGCY 4 cut(s) 20, 46, 164, 203
DdeI CTNAG 2 cut(s) 39, 137
DpnI GATC 3 cut(s) 12, 107, 135
DpnII GATC 3 cut(s) 10, 105, 133
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 35, 94
Eco81I CCTNAGG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 183
FaeI CATG 2 cut(s) 17, 197
FaiI YATR 2 cut(s) 15, 195
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 2 cut(s) 13, 193
FauI CCCGC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 21, 80, 201
Fsp4HI GCNGC 3 cut(s) 21, 80, 201
FspBI CTAG 1 cut(s) 188
GluI GCNGC 3 cut(s) 21, 80, 201
GsuI CTGGAG 1 cut(s) 110
HapII CCGG 1 cut(s) 204
Hin1II CATG 2 cut(s) 17, 197
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 1 cut(s) 99
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 4 cut(s) 14, 38, 103, 194
Hpy8I GTNNAC 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 39, 137
Hsp92II CATG 2 cut(s) 17, 197
Kzo9I GATC 3 cut(s) 10, 105, 133
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 51, 74
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 12, 107, 135
MboI GATC 3 cut(s) 10, 105, 133
MboII GAAGA 1 cut(s) 103
MflI RGATCY 1 cut(s) 105
MluCI AATT 1 cut(s) 183
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 5 cut(s) 34, 85, 119, 127, 189
MroXI GAANNNNTTC 1 cut(s) 63
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 205
NdeII GATC 3 cut(s) 10, 105, 133
NlaIII CATG 2 cut(s) 17, 197
NlaIV GGNNCC 2 cut(s) 36, 45
NmuCI GTSAC 1 cut(s) 125
PagI TCATGA 2 cut(s) 13, 193
PdmI GAANNNNTTC 1 cut(s) 63
PkrI GCNGC 3 cut(s) 22, 81, 202
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 36, 45
PspPI GGNCC 2 cut(s) 35, 94
PspPPI RGGWCCY 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 105
SatI GCNGC 3 cut(s) 21, 80, 201
Sau3AI GATC 3 cut(s) 10, 105, 133
Sau96I GGNCC 2 cut(s) 35, 94
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 205
SetI ASST 5 cut(s) 22, 96, 119, 166, 193
SinI GGWCC 2 cut(s) 35, 94
Sse9I AATT 1 cut(s) 183
SsiI CCGC 2 cut(s) 77, 80
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 203
TaqI TCGA 2 cut(s) 9, 181
TasI AATT 1 cut(s) 183
TauI GCSGC 1 cut(s) 82
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 2 cut(s) 20, 200
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 30, 174, 210
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 2 cut(s) 35, 94
XapI RAATTY 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.