Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034709.1

Orthogroup ID

OG0018116

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 333

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 217 bp

gataaacttcttgaatgagaggactctgaaggggactttctatggtaactacaagccccgcaccgatctacctggtgttgtcgagaagtatatgaacaaggagatggaattggacaaatttatcactcactctgttcctttctctgagatcaacaaggcatttgagtacatgctggcaggagagggaatccggtgcatcatccgcatggagcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

71

Amino Acids

8.38

Weight (kDa)

6.93

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018116)

Species	Orthologous Gene IDs
malus_domestica	MD07G1090400.v1.1
pyrus_communis	pycom05g00770 pycom10g00870
rosa_chinensis	RchiOBHm_Chr6g0277241 RchiOBHm_Chr7g0187481
rosa_multiflora	Rmu_co8098730.1_g000001 Rmu_sc0000030.1_g000037 Rmu_sc0000469.1_g000001 Rmu_sc0006941.1_g000001 Rmu_sc0006941.1_g000002 Rmu_sc0034709.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	59, 203
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	117
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	65, 148
BspACI	CCGC	2 cut(s)	59, 203
BspCNI	CTCAG	1 cut(s)	137
BssMI	GATC	2 cut(s)	65, 148
Bst2UI	CCWGG	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	68, 151
BstMBI	GATC	2 cut(s)	65, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	2 cut(s)	170, 206
CviJI	RGCY	1 cut(s)	56
CviKI_1	RGCY	1 cut(s)	56
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	2 cut(s)	67, 150
DpnII	GATC	2 cut(s)	65, 148
Eco57I	CTGAAG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	173, 209
FaiI	YATR	5 cut(s)	43, 91, 93, 171, 207
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	169, 205
FauI	CCCGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	186
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	2 cut(s)	173, 209
HinfI	GANTC	2 cut(s)	23, 187
HpaII	CCGG	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	28, 146
Hpy188III	TCNNGA	2 cut(s)	11, 83
HpyAV	CCTTC	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	173, 209
Kzo9I	GATC	2 cut(s)	65, 148
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	5 cut(s)	58, 85, 159, 163, 204
LweI	GCATC	1 cut(s)	205
MabI	ACCWGGT	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	2 cut(s)	67, 150
MboI	GATC	2 cut(s)	65, 148
MluCI	AATT	2 cut(s)	108, 117
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	13, 176
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeII	GATC	2 cut(s)	65, 148
NlaIII	CATG	2 cut(s)	173, 209
NspI	RCATGY	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	65, 148
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	1 cut(s)	74
SexAI	ACCWGGT	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	108, 117
SsiI	CCGC	2 cut(s)	59, 203
StyD4I	CCNGG	1 cut(s)	71
TaqI	TCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	108, 117
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	108
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.