Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006941.1

Orthogroup ID

OG0018116

Physical Location & Seq

Genomic Coordinates Forward (+)

13446 .. 15470

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006941.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgagggaggagatggatgaagaagaggatgacatagtaagggaggagatggctgaagaagaagaggatgaaatagcaagcacaccaacatttggtgaatggttacccatttctggaacccagtcgctactcagttcaattgtagaagccagagcaaaacaaatggaattattaagcacagcatggaattccagagcctctgctatttcatttgcaccactcatcactcccaatagttgcaatacctctcacttccaacacccttctctcccacctcaaagcctttctttcccattttgcccgtacccatttcgctttgttcccaacaagtccctcacactgcaggctcgcaagcgaaactcagagcctgagcagcagcagccacttgtcagcccaaccatgtccaacactgctggcaaggtgatcaagtgcaaagctgcggtcgcctgggaagctgggaagccgctggttattgaggaagtggaggtggcaccaccacagaaacatgaagtacgcttgaagatcctctttacctctctgtgccacactgatgtatacttctgggaagcaaaggtaaaccttaaacttattaaagctttgtccatcattgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

204

Amino Acids

22.94

Weight (kDa)

5.12

Isoelectric Point (pI)

60.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018116)

Species	Orthologous Gene IDs
malus_domestica	MD07G1090400.v1.1
pyrus_communis	pycom05g00770 pycom10g00870
rosa_chinensis	RchiOBHm_Chr6g0277241 RchiOBHm_Chr7g0187481
rosa_multiflora	Rmu_co8098730.1_g000001 Rmu_sc0000030.1_g000037 Rmu_sc0000469.1_g000001 Rmu_sc0006941.1_g000001 Rmu_sc0006941.1_g000002 Rmu_sc0034709.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	2 cut(s)	440, 464
AclWI	GGATC	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	305, 513
AfiI	CCNNNNNNNGG	2 cut(s)	92, 113
AgsI	TTSAA	2 cut(s)	138, 520
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	3 cut(s)	437, 455, 596
AluI	AGCT	3 cut(s)	437, 455, 596
AlwI	GGATC	1 cut(s)	517
AlwNI	CAGNNNCTG	1 cut(s)	368
ApeKI	GCWGC	4 cut(s)	373, 376, 379, 437
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AsuHPI	GGTGA	2 cut(s)	107, 433
BanI	GGYRCC	1 cut(s)	490
BbvI	GCAGC	4 cut(s)	385, 388, 391, 424
BccI	CCATC	3 cut(s)	7, 43, 611
BciT130I	CCWGG	1 cut(s)	448
BclI	TGATCA	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	341
BisI	GCNGC	5 cut(s)	374, 377, 380, 438, 464
BlsI	GCNGC	5 cut(s)	375, 378, 381, 439, 465
Bme1390I	CCNGG	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	118, 492
BmrFI	CCNGG	1 cut(s)	448
BmrI	ACTGGG	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 113
Bse1I	ACTGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	3 cut(s)	22, 34, 73
BseLI	CCNNNNNNNGG	2 cut(s)	92, 113
BseMII	CTCAG	3 cut(s)	145, 360, 375
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	23, 59
BseXI	GCAGC	4 cut(s)	385, 388, 391, 424
BseYI	CCCAGC	1 cut(s)	455
Bsh1285I	CGRYCG	1 cut(s)	444
BshNI	GGYRCC	1 cut(s)	490
BsiEI	CGRYCG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	2 cut(s)	92, 113
BsmFI	GGGAC	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	423, 522
BspACI	CCGC	2 cut(s)	440, 464
BspCNI	CTCAG	3 cut(s)	144, 361, 374
BspLI	GGNNCC	2 cut(s)	118, 492
BspMAI	CTGCAG	1 cut(s)	345
BspPI	GGATC	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	2 cut(s)	423, 522
BssNAI	GTATAC	1 cut(s)	556
Bst1107I	GTATAC	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	448
Bst6I	CTCTTC	2 cut(s)	18, 57
BstC8I	GCNNGC	5 cut(s)	79, 345, 349, 353, 415
BstDEI	CTNAG	3 cut(s)	131, 361, 369
BstEII	GGTNACC	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	22, 34, 73
BstKTI	GATC	2 cut(s)	426, 525
BstMBI	GATC	2 cut(s)	423, 522
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	4 cut(s)	373, 379, 443, 452
BstNI	CCWGG	1 cut(s)	448
BstPI	GGTNACC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	341
BstV1I	GCAGC	4 cut(s)	385, 388, 391, 424
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
BstZ17I	GTATAC	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	22, 34, 73
BtsI	GCAGTG	2 cut(s)	338, 408
BtsIMutI	CAGTG	3 cut(s)	338, 408, 546
Cac8I	GCNNGC	5 cut(s)	79, 345, 349, 353, 415
CaiI	CAGNNNCTG	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	304, 512
CviAII	CATG	3 cut(s)	183, 400, 506
CviQI	GTAC	2 cut(s)	304, 512
DdeI	CTNAG	3 cut(s)	131, 361, 369
DpnI	GATC	2 cut(s)	425, 524
DpnII	GATC	2 cut(s)	423, 522
Eam1104I	CTCTTC	2 cut(s)	18, 57
EarI	CTCTTC	2 cut(s)	18, 57
Eco57I	CTGAAG	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	102
EcoO65I	GGTNACC	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	446
FaeI	CATG	3 cut(s)	186, 403, 509
FaiI	YATR	5 cut(s)	35, 184, 401, 507, 556
FalI	AAGNNNNNCTT	4 cut(s)	271, 303, 512, 544
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	182, 399, 505
FbaI	TGATCA	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	5 cut(s)	374, 377, 380, 438, 464
FokI	GGATG	3 cut(s)	29, 41, 80
Fsp4HI	GCNGC	5 cut(s)	374, 377, 380, 438, 464
GluI	GCNGC	5 cut(s)	374, 377, 380, 438, 464
GsaI	CCCAGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	186, 403, 509
HindIII	AAGCTT	1 cut(s)	594
HphI	GGTGA	2 cut(s)	107, 433
Hpy166II	GTNNAC	2 cut(s)	556, 577
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	2 cut(s)	114, 192
Hpy8I	GTNNAC	2 cut(s)	556, 577
HpyAV	CCTTC	1 cut(s)	273
HpyCH4V	TGCA	4 cut(s)	215, 240, 343, 432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	373, 379, 443, 452
HpyF3I	CTNAG	3 cut(s)	131, 361, 369
Hsp92II	CATG	3 cut(s)	186, 403, 509
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	2 cut(s)	423, 522
Lsp1109I	GCAGC	4 cut(s)	385, 388, 391, 424
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	2 cut(s)	425, 524
MboI	GATC	2 cut(s)	423, 522
MboII	GAAGA	6 cut(s)	32, 35, 68, 71, 74, 532
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	522
MluCI	AATT	3 cut(s)	138, 167, 187
MmeI	TCCRAC	2 cut(s)	280, 429
MseI	TTAA	3 cut(s)	173, 582, 591
MslI	CAYNNNNRTG	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	466
MspR9I	CCNGG	1 cut(s)	448
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	373, 379, 443, 452
NdeII	GATC	2 cut(s)	423, 522
NlaIII	CATG	3 cut(s)	186, 403, 509
NlaIV	GGNNCC	2 cut(s)	118, 492
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	375, 378, 381, 439, 465
Psp6I	CCWGG	1 cut(s)	446
PspEI	GGTNACC	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	118, 492
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	522
RsaI	GTAC	2 cut(s)	305, 513
RsaNI	GTAC	2 cut(s)	304, 512
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	173, 582, 591
SatI	GCNGC	5 cut(s)	374, 377, 380, 438, 464
Sau3AI	GATC	2 cut(s)	423, 522
ScrFI	CCNGG	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	549
Sse9I	AATT	3 cut(s)	138, 167, 187
SsiI	CCGC	2 cut(s)	440, 464
StyD4I	CCNGG	1 cut(s)	446
TasI	AATT	3 cut(s)	138, 167, 187
TauI	GCSGC	1 cut(s)	466
Tru1I	TTAA	3 cut(s)	173, 582, 591
Tru9I	TTAA	3 cut(s)	173, 582, 591
TscAI	CASTG	3 cut(s)	345, 415, 553
TseI	GCWGC	4 cut(s)	373, 376, 379, 437
TspDTI	ATGAA	4 cut(s)	33, 84, 198, 522
TspRI	CASTG	3 cut(s)	345, 415, 553
Van91I	CCANNNNNTGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.