Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000469.1

Orthogroup ID

OG0018116

Physical Location & Seq

Genomic Coordinates Forward (+)

596 .. 1910

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000469.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaatcgtttttattcgtgctcaaaaggttttggtgcaattgtaaatgttgcaaagccgaaaaagggttcatctgttgccattttcggattgggtgctgttggtgttgctgctgcggaaggtgcatgggtttctggggcttcaaggatcattggagttgatctgaactccaaccgatttgaggaagggttggggggttgttgtacttgttggagtgctaaacaaagacgcatgttcaaaacccatccagtgaacttcttgaatgagaggactcttaagggaactttctatggtaactacaagccccgcactgatctacctggtgttgtggagaagtacatgaacaaggagttagaattggacaaatttatcactcactctgttcctttctccgagatcaataaggcattcgattacatgctggcaggacagggaatctggtgcatcatcctcatggagcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

154

Amino Acids

17.01

Weight (kDa)

9.15

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018116)

Species	Orthologous Gene IDs
malus_domestica	MD07G1090400.v1.1
pyrus_communis	pycom05g00770 pycom10g00870
rosa_chinensis	RchiOBHm_Chr6g0277241 RchiOBHm_Chr7g0187481
rosa_multiflora	Rmu_co8098730.1_g000001 Rmu_sc0000030.1_g000037 Rmu_sc0000469.1_g000001 Rmu_sc0006941.1_g000001 Rmu_sc0006941.1_g000002 Rmu_sc0034709.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	116, 307
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	2 cut(s)	205, 338
AfiI	CCNNNNNNNGG	2 cut(s)	65, 181
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	144, 238, 262
AjnI	CCWGG	1 cut(s)	319
Alw21I	GWGCWC	2 cut(s)	23, 462
AlwI	GGATC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	110, 113
ApoI	RAATTY	1 cut(s)	365
Bbv12I	GWGCWC	2 cut(s)	23, 462
BbvI	GCAGC	2 cut(s)	97, 100
BccI	CCATC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	321
BfaI	CTAG	1 cut(s)	463
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	2 cut(s)	111, 114
BlsI	GCNGC	2 cut(s)	112, 115
Bme1390I	CCNGG	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 181
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	244, 447
BseLI	CCNNNNNNNGG	2 cut(s)	65, 181
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	97, 100
BsiHKAI	GWGCWC	2 cut(s)	23, 462
BslI	CCNNNNNNNGG	2 cut(s)	65, 181
BsmI	GAATGC	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	23, 462
Bsp143I	GATC	4 cut(s)	147, 160, 313, 396
BspACI	CCGC	2 cut(s)	116, 307
BspPI	GGATC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	4 cut(s)	147, 160, 313, 396
Bst2UI	CCWGG	1 cut(s)	321
BstAFI	CTTAAG	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	244, 447
BstKTI	GATC	4 cut(s)	150, 163, 316, 399
BstMBI	GATC	4 cut(s)	147, 160, 313, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	2 cut(s)	235, 421
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	97, 100
BtsCI	GGATG	2 cut(s)	244, 447
BtsIMutI	CAGTG	2 cut(s)	255, 309
Cac8I	GCNNGC	1 cut(s)	423
CseI	GACGC	1 cut(s)	237
CsiI	ACCWGGT	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	204, 337
CviAII	CATG	5 cut(s)	126, 232, 340, 418, 454
CviJI	RGCY	3 cut(s)	58, 140, 304
CviKI_1	RGCY	3 cut(s)	58, 140, 304
CviQI	GTAC	2 cut(s)	204, 337
DpnI	GATC	4 cut(s)	149, 162, 315, 398
DpnII	GATC	4 cut(s)	147, 160, 313, 396
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	5 cut(s)	129, 235, 343, 421, 457
FaiI	YATR	6 cut(s)	127, 233, 291, 341, 419, 455
FatI	CATG	5 cut(s)	125, 231, 339, 417, 453
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	111, 114
FokI	GGATG	2 cut(s)	231, 434
Fsp4HI	GCNGC	2 cut(s)	111, 114
FspBI	CTAG	1 cut(s)	463
GluI	GCNGC	2 cut(s)	111, 114
HgaI	GACGC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	129, 235, 343, 421, 457
HinfI	GANTC	3 cut(s)	4, 271, 435
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	89, 165, 394
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	113, 179
HpyCH4V	TGCA	4 cut(s)	38, 53, 125, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
Hsp92II	CATG	5 cut(s)	129, 235, 343, 421, 457
Kzo9I	GATC	4 cut(s)	147, 160, 313, 396
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	8 cut(s)	120, 261, 306, 333, 407, 411, 416, 424
Lsp1109I	GCAGC	2 cut(s)	97, 100
LweI	GCATC	1 cut(s)	453
MabI	ACCWGGT	1 cut(s)	319
MaeI	CTAG	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	4 cut(s)	149, 162, 315, 398
MboI	GATC	4 cut(s)	147, 160, 313, 396
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	23, 462
MluCI	AATT	3 cut(s)	39, 356, 365
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	2 cut(s)	191, 195
MnlI	CCTC	3 cut(s)	175, 261, 461
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	452
MspCI	CTTAAG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	4 cut(s)	147, 160, 313, 396
NlaIII	CATG	5 cut(s)	129, 235, 343, 421, 457
NspI	RCATGY	2 cut(s)	235, 421
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	4, 435
PkrI	GCNGC	2 cut(s)	112, 115
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	205, 338
RsaNI	GTAC	2 cut(s)	204, 337
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	2 cut(s)	111, 114
Sau3AI	GATC	4 cut(s)	147, 160, 313, 396
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	23, 462
SetI	ASST	3 cut(s)	31, 124, 322
SexAI	ACCWGGT	1 cut(s)	319
SfaNI	GCATC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	39, 356, 365
SsiI	CCGC	2 cut(s)	116, 307
SspMI	CTAG	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	319
TaqI	TCGA	1 cut(s)	411
TasI	AATT	3 cut(s)	39, 356, 365
TatI	WGTACW	2 cut(s)	203, 336
TfiI	GAWTC	2 cut(s)	4, 435
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	255, 316
TseI	GCWGC	2 cut(s)	110, 113
TspDTI	ATGAA	3 cut(s)	17, 60, 356
TspRI	CASTG	2 cut(s)	255, 316
Vha464I	CTTAAG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	2 cut(s)	235, 421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.