Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000030.1

Orthogroup ID

OG0018116

Physical Location & Seq

Genomic Coordinates Forward (+)

182013 .. 186318

Gene Structure 4306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000030.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgagggaggagatggatgaagaagaggatgacatagtaagggaggagatggctgaagaagaagaggatgaaatagcaagcacaccaacatttggtgaatggttacccatttctggaacccagtcgctactcagttcaattgtagaagccagagcaaaacaaatggaattattaagcacagcatggaattccagagcctctgctatttcatttgcaccactcatcactcccaatagttgcaatacctctcacttccaacacccttctctcccacctcaaagcctttctttcccattttgcccgtacccatttcgctttgttcccaacaagtccctcacactgcaggctcgcaagcgaaactcagagcctgagcagcagcagccacttgtcagcccaaccatgtccaacactgctggcaagggttggggggttgctgtacttgttggagtgccaaacaaagacgatgcattcaaaacccatccgataaacttcttgaatgagaggactctgaaggggactttctatggtaactacaagccccgcaccgatctacctggtgttgtggagaagtatatgaacaaggagatggaattggacaaatttatcactcactctgttcctttctctgagatcaacaaggcatttgagtacatgctggcaggagagggaatccggtgcatcatccgcatggagcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

232

Amino Acids

26.28

Weight (kDa)

5.07

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018116)

Species	Orthologous Gene IDs
malus_domestica	MD07G1090400.v1.1
pyrus_communis	pycom05g00770 pycom10g00870
rosa_chinensis	RchiOBHm_Chr6g0277241 RchiOBHm_Chr7g0187481
rosa_multiflora	Rmu_co8098730.1_g000001 Rmu_sc0000030.1_g000037 Rmu_sc0000469.1_g000001 Rmu_sc0006941.1_g000001 Rmu_sc0006941.1_g000002 Rmu_sc0034709.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	92
AciI	CCGC	2 cut(s)	541, 685
AcsI	RAATTY	2 cut(s)	187, 599
AcuI	CTGAAG	2 cut(s)	75, 530
AfaI	GTAC	3 cut(s)	305, 438, 650
AfiI	CCNNNNNNNGG	2 cut(s)	92, 113
AgsI	TTSAA	3 cut(s)	138, 472, 496
AjnI	CCWGG	1 cut(s)	553
AlwNI	CAGNNNCTG	1 cut(s)	368
ApeKI	GCWGC	3 cut(s)	373, 376, 379
ApoI	RAATTY	2 cut(s)	187, 599
AsuHPI	GGTGA	1 cut(s)	107
BbvI	GCAGC	3 cut(s)	385, 388, 391
BccI	CCATC	4 cut(s)	7, 43, 486, 580
BciT130I	CCWGG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	341
BisI	GCNGC	3 cut(s)	374, 377, 380
BlsI	GCNGC	3 cut(s)	375, 378, 381
Bme1390I	CCNGG	1 cut(s)	555
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	555
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	454, 687
BmuI	ACTGGG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	369
BsaWI	WCCGGW	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 113
Bse1I	ACTGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	555
BseGI	GGATG	5 cut(s)	22, 34, 73, 478, 681
BseLI	CCNNNNNNNGG	2 cut(s)	92, 113
BseMII	CTCAG	4 cut(s)	145, 360, 375, 618
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	23, 59
BseXI	GCAGC	3 cut(s)	385, 388, 391
BsiSI	CCGG	1 cut(s)	673
BslFI	GGGAC	2 cut(s)	316, 529
BslI	CCNNNNNNNGG	2 cut(s)	92, 113
BsmFI	GGGAC	2 cut(s)	316, 529
BsmI	GAATGC	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	547, 630
BspACI	CCGC	2 cut(s)	541, 685
BspCNI	CTCAG	4 cut(s)	144, 361, 374, 619
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	547, 630
Bst2UI	CCWGG	1 cut(s)	555
Bst6I	CTCTTC	2 cut(s)	18, 57
BstC8I	GCNNGC	6 cut(s)	79, 345, 349, 353, 415, 657
BstDEI	CTNAG	4 cut(s)	131, 361, 369, 627
BstEII	GGTNACC	1 cut(s)	102
BstF5I	GGATG	5 cut(s)	22, 34, 73, 478, 681
BstKTI	GATC	2 cut(s)	550, 633
BstMBI	GATC	2 cut(s)	547, 630
BstMWI	GCNNNNNNNGC	3 cut(s)	373, 379, 684
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	1 cut(s)	655
BstPI	GGTNACC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	385, 388, 391
BtsCI	GGATG	5 cut(s)	22, 34, 73, 478, 681
BtsI	GCAGTG	2 cut(s)	338, 408
BtsIMutI	CAGTG	2 cut(s)	338, 408
Cac8I	GCNNGC	6 cut(s)	79, 345, 349, 353, 415, 657
CaiI	CAGNNNCTG	1 cut(s)	368
CsiI	ACCWGGT	1 cut(s)	553
Csp6I	GTAC	3 cut(s)	304, 437, 649
CviAII	CATG	4 cut(s)	183, 400, 652, 688
CviJI	RGCY	9 cut(s)	53, 149, 197, 282, 347, 367, 382, 393, 538
CviKI_1	RGCY	9 cut(s)	53, 149, 197, 282, 347, 367, 382, 393, 538
CviQI	GTAC	3 cut(s)	304, 437, 649
DdeI	CTNAG	4 cut(s)	131, 361, 369, 627
DpnI	GATC	2 cut(s)	549, 632
DpnII	GATC	2 cut(s)	547, 630
Eam1104I	CTCTTC	2 cut(s)	18, 57
EarI	CTCTTC	2 cut(s)	18, 57
Eco57I	CTGAAG	2 cut(s)	75, 530
Eco91I	GGTNACC	1 cut(s)	102
EcoO65I	GGTNACC	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	553
EcoT22I	ATGCAT	1 cut(s)	469
FaeI	CATG	4 cut(s)	186, 403, 655, 691
FaiI	YATR	8 cut(s)	35, 184, 401, 525, 573, 575, 653, 689
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FaqI	GGGAC	2 cut(s)	316, 529
FatI	CATG	4 cut(s)	182, 399, 651, 687
FauI	CCCGC	1 cut(s)	548
Fnu4HI	GCNGC	3 cut(s)	374, 377, 380
FokI	GGATG	5 cut(s)	29, 41, 80, 465, 668
Fsp4HI	GCNGC	3 cut(s)	374, 377, 380
GluI	GCNGC	3 cut(s)	374, 377, 380
HapII	CCGG	1 cut(s)	673
Hin1II	CATG	4 cut(s)	186, 403, 655, 691
HinfI	GANTC	2 cut(s)	505, 669
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	4 cut(s)	364, 483, 510, 628
Hpy188III	TCNNGA	3 cut(s)	114, 192, 493
HpyAV	CCTTC	2 cut(s)	273, 505
HpyCH4V	TGCA	5 cut(s)	215, 240, 343, 467, 678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	373, 379, 684
HpyF3I	CTNAG	4 cut(s)	131, 361, 369, 627
Hsp92II	CATG	4 cut(s)	186, 403, 655, 691
Kzo9I	GATC	2 cut(s)	547, 630
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	3 cut(s)	385, 388, 391
LweI	GCATC	2 cut(s)	454, 687
MabI	ACCWGGT	1 cut(s)	553
MaeIII	GTNAC	2 cut(s)	102, 527
MalI	GATC	2 cut(s)	549, 632
MboI	GATC	2 cut(s)	547, 630
MboII	GAAGA	5 cut(s)	32, 35, 68, 71, 74
MfeI	CAATTG	1 cut(s)	138
MluCI	AATT	5 cut(s)	138, 167, 187, 590, 599
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	3 cut(s)	280, 424, 429
MnlI	CCTC	9 cut(s)	19, 37, 58, 208, 256, 285, 344, 495, 658
Mph1103I	ATGCAT	1 cut(s)	469
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	686
MspI	CCGG	1 cut(s)	673
MspR9I	CCNGG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	3 cut(s)	373, 379, 684
NdeII	GATC	2 cut(s)	547, 630
NlaIII	CATG	4 cut(s)	186, 403, 655, 691
NlaIV	GGNNCC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	1 cut(s)	655
PctI	GAATGC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	669
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	375, 378, 381
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	553
PspEI	GGTNACC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	368
RsaI	GTAC	3 cut(s)	305, 438, 650
RsaNI	GTAC	3 cut(s)	304, 437, 649
RseI	CAYNNNNRTG	1 cut(s)	686
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	374, 377, 380
Sau3AI	GATC	2 cut(s)	547, 630
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	555
SetI	ASST	3 cut(s)	248, 277, 556
SexAI	ACCWGGT	1 cut(s)	553
SfaNI	GCATC	2 cut(s)	454, 687
SfcI	CTRYAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	686
Sse9I	AATT	5 cut(s)	138, 167, 187, 590, 599
SsiI	CCGC	2 cut(s)	541, 685
StyD4I	CCNGG	1 cut(s)	553
TasI	AATT	5 cut(s)	138, 167, 187, 590, 599
TatI	WGTACW	2 cut(s)	436, 648
TfiI	GAWTC	1 cut(s)	669
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	345, 415
TseI	GCWGC	3 cut(s)	373, 376, 379
TspDTI	ATGAA	4 cut(s)	33, 84, 198, 590
TspRI	CASTG	2 cut(s)	345, 415
Van91I	CCANNNNNTGG	1 cut(s)	92
XapI	RAATTY	2 cut(s)	187, 599
XceI	RCATGY	1 cut(s)	655
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.