Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0018116

Physical Location & Seq

Genomic Coordinates Reverse (-)

939917 .. 940710

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCGCGCCACGCGGATCGTTGAACGGAGGCCTCCCTTGAAAGTGTACGGAAAGCGGGAGGTATCACCGGAGACGACGACCGGAGCGACGGACTTCTCGCCGGAGGACTCGATTGGTGCGCGATCAAGAAACGCGAAGGCGCTGGTGGAGGGTTGGGGTGTTGCTGTTCTTGTGGGAGTCCCACACAAAGAAGCCGTCTTCAAGACGCCTCCGGTTAACTTTCTGACTGAGGGGACTCTCAAGGGTACATTCTACGGAAACTACAAGCCTCGAACGGACATTCCCTCTGTTGTGGAGATGTACATGAACAAGGAACTGGAGCTAGAGAAATTCTTCACCCACGAAGTCCCGTTCTCAGAAATCAACAAGGCTTTTGAGTACATGCTTAAAGAGGAAGGTCTTCGTTGCCTAATCTACATGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00592 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

143

Amino Acids

16.18

Weight (kDa)

6.19

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018116)

Species	Orthologous Gene IDs
malus_domestica	MD07G1090400.v1.1
pyrus_communis	pycom05g00770 pycom10g00870
rosa_chinensis	RchiOBHm_Chr6g0277241 RchiOBHm_Chr7g0187481
rosa_multiflora	Rmu_co8098730.1_g000001 Rmu_sc0000030.1_g000037 Rmu_sc0000469.1_g000001 Rmu_sc0006941.1_g000001 Rmu_sc0006941.1_g000002 Rmu_sc0034709.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	6, 13, 121, 134
AciI	CCGC	2 cut(s)	13, 55
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	4 cut(s)	47, 247, 302, 380
AgsI	TTSAA	3 cut(s)	23, 40, 202
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
Asp700I	GAANNNNTTC	2 cut(s)	332, 399
AspLEI	GCGC	4 cut(s)	6, 8, 121, 142
AsuHPI	GGTGA	2 cut(s)	57, 328
BbsI	GAAGAC	2 cut(s)	190, 392
BceAI	ACGGC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	190, 392
BpmI	CTGGAG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	206
BsaWI	WCCGGW	3 cut(s)	67, 80, 211
Bse1I	ACTGG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	219, 369
BseNI	ACTGG	1 cut(s)	321
BsePI	GCGCGC	1 cut(s)	4
Bsh1236I	CGCG	4 cut(s)	6, 13, 121, 134
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	4 cut(s)	68, 81, 101, 212
BslFI	GGGAC	3 cut(s)	164, 247, 332
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	3 cut(s)	164, 247, 332
BsnI	GGCC	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	15, 122
BspACI	CCGC	2 cut(s)	13, 55
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	220, 368
BspFNI	CGCG	4 cut(s)	6, 13, 121, 134
BspPI	GGATC	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	321
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	2 cut(s)	15, 122
BssNI	GRCGYC	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	228, 355
BstFNI	CGCG	4 cut(s)	6, 13, 121, 134
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	4 cut(s)	6, 8, 121, 142
BstKTI	GATC	2 cut(s)	18, 125
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	15, 122
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	385
BstUI	CGCG	4 cut(s)	6, 13, 121, 134
BstV2I	GAAGAC	2 cut(s)	190, 392
BsuRI	GGCC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	4 cut(s)	6, 8, 121, 142
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	4 cut(s)	46, 246, 301, 379
CviAII	CATG	3 cut(s)	304, 382, 418
CviJI	RGCY	5 cut(s)	31, 194, 268, 322, 371
CviKI_1	RGCY	5 cut(s)	31, 194, 268, 322, 371
CviQI	GTAC	4 cut(s)	46, 246, 301, 379
DdeI	CTNAG	2 cut(s)	228, 355
DpnI	GATC	2 cut(s)	17, 124
DpnII	GATC	2 cut(s)	15, 122
Eco147I	AGGCCT	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	307, 385, 421
FaiI	YATR	3 cut(s)	305, 383, 419
FaqI	GGGAC	3 cut(s)	164, 247, 332
FatI	CATG	3 cut(s)	303, 381, 417
FauI	CCCGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	4 cut(s)	5, 7, 120, 141
GsuI	CTGGAG	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	4 cut(s)	68, 81, 101, 212
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	4 cut(s)	6, 8, 121, 142
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	307, 385, 421
Hin6I	GCGC	4 cut(s)	4, 6, 119, 140
HinP1I	GCGC	4 cut(s)	4, 6, 119, 140
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	107, 177, 235
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	4 cut(s)	68, 81, 101, 212
HphI	GGTGA	2 cut(s)	57, 328
Hpy166II	GTNNAC	2 cut(s)	46, 217
Hpy188I	TCNGA	2 cut(s)	225, 358
Hpy188III	TCNNGA	2 cut(s)	126, 202
Hpy8I	GTNNAC	2 cut(s)	46, 217
Hpy99I	CGWCG	2 cut(s)	79, 91
HpyAV	CCTTC	2 cut(s)	130, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	228, 355
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	3 cut(s)	307, 385, 421
HspAI	GCGC	4 cut(s)	4, 6, 119, 140
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	15, 122
LmnI	GCTCC	2 cut(s)	83, 319
LpnPI	CCDG	6 cut(s)	81, 94, 114, 128, 225, 302
MaeI	CTAG	1 cut(s)	323
MalI	GATC	2 cut(s)	17, 124
MboI	GATC	2 cut(s)	15, 122
MboII	GAAGA	3 cut(s)	190, 325, 392
MluCI	AATT	1 cut(s)	329
MlyI	GAGTC	3 cut(s)	101, 186, 229
MroXI	GAANNNNTTC	2 cut(s)	332, 399
MseI	TTAA	2 cut(s)	216, 387
MspI	CCGG	4 cut(s)	68, 81, 101, 212
MvnI	CGCG	4 cut(s)	6, 13, 121, 134
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	15, 122
NlaIII	CATG	3 cut(s)	307, 385, 421
NspI	RCATGY	1 cut(s)	385
PauI	GCGCGC	1 cut(s)	4
PceI	AGGCCT	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PdmI	GAANNNNTTC	2 cut(s)	332, 399
PleI	GAGTC	3 cut(s)	101, 185, 229
PpsI	GAGTC	3 cut(s)	101, 185, 229
PteI	GCGCGC	1 cut(s)	4
RsaI	GTAC	4 cut(s)	47, 247, 302, 380
RsaNI	GTAC	4 cut(s)	46, 246, 301, 379
SaqAI	TTAA	2 cut(s)	216, 387
Sau3AI	GATC	2 cut(s)	15, 122
SchI	GAGTC	3 cut(s)	101, 186, 229
SetI	ASST	3 cut(s)	63, 324, 400
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	329
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	13, 55
SspMI	CTAG	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	110, 271
TasI	AATT	1 cut(s)	329
TatI	WGTACW	2 cut(s)	300, 378
Tru1I	TTAA	2 cut(s)	216, 387
Tru9I	TTAA	2 cut(s)	216, 387
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	5 cut(s)	40, 63, 104, 270, 290
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	2 cut(s)	332, 399
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.