Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008546

Physical Location & Seq

Genomic Coordinates Reverse (-)

11915980 .. 11916447

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1105400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGGGCTTCGGGCTCATCCCACAGATTGAGCATTATGGTTGCATGGTAGATCTGTTGGGAAGGGCGGGATGCTTGGAAGAAGTTGAGAAATTGATCGAAGCCATACCTTATGATGCTAATGGAATAATTTTGAGTTCTTTTCTTTTTGCATGCGGCCATTATGGGGATGTCACAAGAGCGAACGAAGTTTTAAAGAAGGTGGCCAAGCTGGAGCCAGGGAATGACGGAAACTATATAATGCTTAGAAATTTGTATGCCAGAAAGAGAAGGTGGAGTGATGCGGAGAAAATTAAGAGGTTGATGAGGAGGAATCAAGCAAACAAGGAGATTGGTTGTAGTGTCATAGAGGTTGATGGTAGAATCGAGGAGTTTGCGGCTGGGCACAGGGTGCATACGCATTCAGAAGCTATACATTTAACCTTGCTGCAGAGTTTGAACCATATGATGGGGGAAGGTTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

156

Amino Acids

17.47

Weight (kDa)

6.38

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	55 - 117	5.2e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44880 AT2G44880 AT2G44880 AT2G44880 AT2G44880 AT2G44880
fragaria_vesca	FvH4_7g09950
malus_domestica	MD07G1104700.v1.1 MD07G1105400.v1.1
prunus_persica	Prupe.2G128300_v2.0.a1
pyrus_communis	pycom07g08960
rosa_chinensis	RchiOBHm_Chr1g0347511 RchiOBHm_Chr1g0347541
rosa_laevigata	RLG00000028745
rosa_multiflora	Rmu_ssc0000280.1_g000005
rosa_roxburghii	Rroxscaffold_4G00307740
rosa_rugosa	Rorug01G0187500
rosa_samantha	Rh1AG204700 Rh1BG170500 Rh1CG189800 Rh1DG200800
rosa_wichuraiana	Rw0G013630 Rw1G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	448
AciI	CCGC	4 cut(s)	68, 156, 284, 377
AcoI	YGGCCR	2 cut(s)	157, 204
AcsI	RAATTY	1 cut(s)	250
AdeI	CACNNNGTG	1 cut(s)	391
AfiI	CCNNNNNNNGG	2 cut(s)	166, 448
AgsI	TTSAA	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	2 cut(s)	211, 410
AluI	AGCT	2 cut(s)	211, 410
AoxI	GGCC	2 cut(s)	157, 204
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	2 cut(s)	350, 442
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	428
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	3 cut(s)	157, 378, 428
BlsI	GCNGC	3 cut(s)	158, 379, 429
Bme1390I	CCNGG	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	62, 106, 271
BpmI	CTGGAG	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 448
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	3 cut(s)	18, 77, 175
BseLI	CCNNNNNNNGG	2 cut(s)	166, 448
BseRI	GAGGAG	2 cut(s)	322, 383
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	414
BseYI	CCCAGC	1 cut(s)	380
BshFI	GGCC	2 cut(s)	159, 206
BslI	CCNNNNNNNGG	2 cut(s)	166, 448
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	159, 206
Bsp1286I	GDGCHC	2 cut(s)	18, 387
Bsp143I	GATC	2 cut(s)	52, 96
BspACI	CCGC	4 cut(s)	68, 156, 284, 377
BspANI	GGCC	2 cut(s)	159, 206
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	52, 96
Bst2UI	CCWGG	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	18, 77, 175
BstKTI	GATC	2 cut(s)	55, 99
BstMBI	GATC	2 cut(s)	52, 96
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	159, 206
BtsCI	GGATG	3 cut(s)	18, 77, 175
Cac8I	GCNNGC	1 cut(s)	154
CviAII	CATG	2 cut(s)	46, 153
CviJI	RGCY	9 cut(s)	9, 16, 104, 159, 206, 211, 217, 380, 410
CviKI_1	RGCY	9 cut(s)	9, 16, 104, 159, 206, 211, 217, 380, 410
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	2 cut(s)	54, 98
DpnII	GATC	2 cut(s)	52, 96
DraI	TTTAAA	1 cut(s)	195
DraIII	CACNNNGTG	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	157, 204
Eco24I	GRGCYC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	2 cut(s)	49, 156
FatI	CATG	2 cut(s)	45, 152
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	157, 378, 428
FokI	GGATG	3 cut(s)	5, 84, 182
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	3 cut(s)	157, 378, 428
GluI	GCNGC	3 cut(s)	157, 378, 428
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	159, 206
Hin1II	CATG	2 cut(s)	49, 156
HinfI	GANTC	2 cut(s)	313, 363
Hpy188I	TCNGA	1 cut(s)	406
HpyAV	CCTTC	4 cut(s)	57, 193, 264, 449
HpyCH4V	TGCA	4 cut(s)	45, 152, 394, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	49, 156
Kzo9I	GATC	2 cut(s)	52, 96
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	197, 204, 231, 274, 366, 373
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	3 cut(s)	62, 106, 271
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	54, 98
MboI	GATC	2 cut(s)	52, 96
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	18, 387
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	4 cut(s)	92, 129, 250, 291
MluNI	TGGCCA	1 cut(s)	206
MnlI	CCTC	5 cut(s)	291, 300, 303, 343, 361
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	3 cut(s)	194, 294, 419
Msp20I	TGGCCA	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	391
NdeI	CATATG	1 cut(s)	444
NdeII	GATC	2 cut(s)	52, 96
NlaIII	CATG	2 cut(s)	49, 156
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	156
PaeI	GCATGC	1 cut(s)	156
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	313, 363
PflMI	CCANNNNNTGG	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	158, 379, 429
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	52
SaqAI	TTAA	3 cut(s)	194, 294, 419
SatI	GCNGC	3 cut(s)	157, 378, 428
Sau3AI	GATC	2 cut(s)	52, 96
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	2 cut(s)	18, 387
SetI	ASST	9 cut(s)	112, 204, 213, 275, 302, 354, 412, 425, 460
SfaNI	GCATC	3 cut(s)	62, 106, 271
SfcI	CTRYAG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	156
Sse9I	AATT	4 cut(s)	92, 129, 250, 291
SsiI	CCGC	4 cut(s)	68, 156, 284, 377
StyD4I	CCNGG	1 cut(s)	217
TaqI	TCGA	2 cut(s)	99, 366
TasI	AATT	4 cut(s)	92, 129, 250, 291
TauI	GCSGC	2 cut(s)	159, 380
TfiI	GAWTC	2 cut(s)	313, 363
Tru1I	TTAA	3 cut(s)	194, 294, 419
Tru9I	TTAA	3 cut(s)	194, 294, 419
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	243
Van91I	CCANNNNNTGG	1 cut(s)	448
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.