Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008546

Physical Location & Seq

Genomic Coordinates Reverse (-)

8156545 .. 8157522

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCCATGCCCAAGAAGAATCTTATTTCTTGGAATGCGATCGATCGGAGGTTATAGTCAAAATAACCAACCCCATGAAGCCTTGAAGTTATTTCAGGAAATGCAGTCAACTACATCGCTAGAATTGGATGGTGTGACTGTTGTGAGCATTCTTCCAGCTATTGCAGATTTGGGCACCTTGGCTTTGGGTCGTTGGGTTGACAAGGTTGCACGGAGGAAGAAGCTTGATAGGATAACTAATGTTGGCACTGCGCTTGTTGATATGTACGCAAAATGTGGTGAAATTAAAAAAGCCAAGAGACTTTTTGATGAGATGCCTGAAAAAGAAACAGCTTCCTGGAATGCCCTGATAAATGGATTTGCAGTCAATGGTCATGGCGAGGAGGCACTGGAGATATTTTTGGAGATGCAGAAAGAGAACTTTATGCCAAATAATATTACCTTTATCGGGGTTTTGTCCGCTTGTAACCACTGTGGTCTGGTAGAGGAAGGGAAAAGGTGGTTTAAAGCAATGGAGAGCTTCGGGCTCATCCCACAGATTGAGCATTATGGTTGCATGGTAGATGTCTTGGGAAGGGCAGGATGCTTGGAAGAAGTTGAGAAATTGATTGAAGTCATGCCTTATGATGCTAATGGAATAATTTTGAGTTCTTTTCTTTTTGCATGCGGCCATTATGGGGATGTCACAAGAGCCAACAAAGTGTTAAAGAAGGTGGCCAAGCTGGAGCCAGGGAATGATGGAAACTACGTAATGCTCAGAAATTTGTATGCCAGAAAGAGAAGGTGGGGTGATGCGGAGGAAATTAAGAGGTTGATGAGGAAGAATCAAGCAAATAAGGAGATTGGTTGTAGTGTCATAGAGGTTAATGGTAGAATCGAGGAGTTTGTGGCTGGGGACAGGGTGCATACCCATTCAGAAGCTATGCATTTAACATTGCTGCAGGGTTGGAAGCATATGATGGGGGAAGGTTCGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

326

Amino Acids

36.53

Weight (kDa)

7.11

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	110 - 155	2.3e-11	PPR repeat family
PPR	PF01535	112 - 141	1.2e-08	PPR repeat
E_motif	PF20431	225 - 287	3.8e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44880 AT2G44880 AT2G44880 AT2G44880 AT2G44880 AT2G44880
fragaria_vesca	FvH4_7g09950
malus_domestica	MD07G1104700.v1.1 MD07G1105400.v1.1
prunus_persica	Prupe.2G128300_v2.0.a1
pyrus_communis	pycom07g08960
rosa_chinensis	RchiOBHm_Chr1g0347511 RchiOBHm_Chr1g0347541
rosa_laevigata	RLG00000028745
rosa_multiflora	Rmu_ssc0000280.1_g000005
rosa_roxburghii	Rroxscaffold_4G00307740
rosa_rugosa	Rorug01G0187500
rosa_samantha	Rh1AG204700 Rh1BG170500 Rh1CG189800 Rh1DG200800
rosa_wichuraiana	Rw0G013630 Rw1G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	3 cut(s)	459, 666, 794
AcoI	YGGCCR	2 cut(s)	667, 714
AcsI	RAATTY	1 cut(s)	760
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	447, 676
AgsI	TTSAA	2 cut(s)	85, 611
AjnI	CCWGG	2 cut(s)	335, 727
AluBI	AGCT	6 cut(s)	158, 223, 332, 519, 721, 920
AluI	AGCT	6 cut(s)	158, 223, 332, 519, 721, 920
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	667, 714
ApeKI	GCWGC	1 cut(s)	937
ApoI	RAATTY	1 cut(s)	760
AspLEI	GCGC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	290, 800
BaeGI	GKGCMC	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	924
BccI	CCATC	3 cut(s)	122, 731, 952
BciT130I	CCWGG	2 cut(s)	337, 729
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	938
BisI	GCNGC	2 cut(s)	667, 938
BlsI	GCNGC	2 cut(s)	668, 939
Bme1390I	CCNGG	2 cut(s)	337, 729
BmiI	GGNNCC	2 cut(s)	175, 726
BmrFI	CCNGG	2 cut(s)	337, 729
BmsI	GCATC	5 cut(s)	303, 396, 572, 616, 781
BpmI	CTGGAG	2 cut(s)	410, 743
Bsa29I	ATCGAT	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	748
BsaJI	CCNNGG	2 cut(s)	177, 728
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 676
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	2 cut(s)	516, 932
BseBI	CCWGG	2 cut(s)	337, 729
BseCI	ATCGAT	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	177, 728
BseGI	GGATG	4 cut(s)	133, 528, 587, 685
BseLI	CCNNNNNNNGG	2 cut(s)	447, 676
BseMI	GCAATG	2 cut(s)	516, 932
BseMII	CTCAG	1 cut(s)	769
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	395, 893
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	924
BseYI	CCCAGC	1 cut(s)	890
Bsh1285I	CGRYCG	2 cut(s)	41, 45
BshFI	GGCC	2 cut(s)	669, 716
BshNI	GGYRCC	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	41
BsiEI	CGRYCG	2 cut(s)	41, 45
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	2 cut(s)	447, 676
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	908
BsmI	GAATGC	3 cut(s)	39, 147, 346
BsnI	GGCC	2 cut(s)	669, 716
Bsp1286I	GDGCHC	2 cut(s)	176, 528
Bsp143I	GATC	2 cut(s)	38, 42
BspACI	CCGC	3 cut(s)	459, 666, 794
BspANI	GGCC	2 cut(s)	669, 716
BspCNI	CTCAG	1 cut(s)	768
BspDI	ATCGAT	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	175, 726
BspMAI	CTGCAG	1 cut(s)	942
BspT107I	GGYRCC	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	516, 932
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	177, 728
BssMI	GATC	2 cut(s)	38, 42
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	337, 729
Bst4CI	ACNGT	2 cut(s)	139, 473
BstBAI	YACGTR	1 cut(s)	748
BstC8I	GCNNGC	1 cut(s)	664
BstDEI	CTNAG	1 cut(s)	755
BstF5I	GGATG	4 cut(s)	133, 528, 587, 685
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	41, 45
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	38, 42
BstMCI	CGRYCG	2 cut(s)	41, 45
BstNI	CCWGG	2 cut(s)	337, 729
BstNSI	RCATGY	1 cut(s)	666
BstSCI	CCNGG	2 cut(s)	335, 727
BstSFI	CTRYAG	1 cut(s)	938
BstSLI	GKGCMC	1 cut(s)	176
BstSNI	TACGTA	1 cut(s)	748
BstV1I	GCAGC	1 cut(s)	924
Bsu15I	ATCGAT	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	669, 716
BsuTUI	ATCGAT	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	4 cut(s)	133, 528, 587, 685
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	246, 386, 469
Cac8I	GCNNGC	1 cut(s)	664
CfoI	GCGC	1 cut(s)	253
ClaI	ATCGAT	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	6 cut(s)	6, 74, 374, 556, 616, 663
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	755
DpnI	GATC	2 cut(s)	40, 44
DpnII	GATC	2 cut(s)	38, 42
DraI	TTTAAA	1 cut(s)	505
EaeI	YGGCCR	2 cut(s)	667, 714
Eco105I	TACGTA	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	528
EcoRII	CCWGG	2 cut(s)	335, 727
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	927
EcoT38I	GRGCYC	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	6 cut(s)	9, 77, 377, 559, 619, 666
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	6 cut(s)	5, 73, 373, 555, 615, 662
FauNDI	CATATG	1 cut(s)	954
Fnu4HI	GCNGC	2 cut(s)	667, 938
FokI	GGATG	4 cut(s)	140, 515, 594, 692
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	2 cut(s)	667, 938
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	667, 938
GsaI	CCCAGC	1 cut(s)	894
GsuI	CTGGAG	2 cut(s)	410, 743
HaeIII	GGCC	2 cut(s)	669, 716
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	6 cut(s)	9, 77, 377, 559, 619, 666
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	2 cut(s)	108, 199
HindII	GTYRAC	2 cut(s)	108, 199
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	3 cut(s)	18, 823, 873
HphI	GGTGA	2 cut(s)	290, 800
Hpy166II	GTNNAC	2 cut(s)	108, 199
Hpy188I	TCNGA	3 cut(s)	47, 758, 916
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	108, 199
HpyAV	CCTTC	5 cut(s)	482, 567, 703, 774, 959
HpyCH4III	ACNGT	2 cut(s)	139, 473
HpyCH4IV	ACGT	1 cut(s)	747
HpyF3I	CTNAG	1 cut(s)	755
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	6 cut(s)	9, 77, 377, 559, 619, 666
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	38, 42
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	1 cut(s)	924
LweI	GCATC	5 cut(s)	303, 396, 572, 616, 781
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	133, 464, 682
MalI	GATC	2 cut(s)	40, 44
MboI	GATC	2 cut(s)	38, 42
MboII	GAAGA	5 cut(s)	27, 143, 229, 602, 832
MhlI	GDGCHC	2 cut(s)	176, 528
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	6 cut(s)	122, 282, 602, 639, 760, 801
MluNI	TGGCCA	1 cut(s)	716
MmeI	TCCRAC	1 cut(s)	926
Mox20I	TGGCCA	1 cut(s)	716
Mph1103I	ATGCAT	1 cut(s)	927
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	6 cut(s)	285, 504, 704, 804, 864, 929
Msp20I	TGGCCA	1 cut(s)	716
MspR9I	CCNGG	2 cut(s)	337, 729
Mva1269I	GAATGC	3 cut(s)	39, 147, 346
MvaI	CCWGG	2 cut(s)	337, 729
NdeI	CATATG	1 cut(s)	954
NdeII	GATC	2 cut(s)	38, 42
NlaIII	CATG	6 cut(s)	9, 77, 377, 559, 619, 666
NlaIV	GGNNCC	2 cut(s)	175, 726
NmuCI	GTSAC	2 cut(s)	133, 682
NsiI	ATGCAT	1 cut(s)	927
NspI	RCATGY	1 cut(s)	666
PaeI	GCATGC	1 cut(s)	666
PctI	GAATGC	3 cut(s)	39, 147, 346
PfeI	GAWTC	3 cut(s)	18, 823, 873
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	668, 939
Ple19I	CGATCG	2 cut(s)	41, 45
Ppu21I	YACGTR	1 cut(s)	748
Psp6I	CCWGG	2 cut(s)	335, 727
PspFI	CCCAGC	1 cut(s)	890
PspGI	CCWGG	2 cut(s)	335, 727
PspN4I	GGNNCC	2 cut(s)	175, 726
PstI	CTGCAG	1 cut(s)	942
PvuI	CGATCG	2 cut(s)	41, 45
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	6 cut(s)	285, 504, 704, 804, 864, 929
SatI	GCNGC	2 cut(s)	667, 938
Sau3AI	GATC	2 cut(s)	38, 42
ScrFI	CCNGG	2 cut(s)	337, 729
SduI	GDGCHC	2 cut(s)	176, 528
SfaNI	GCATC	5 cut(s)	303, 396, 572, 616, 781
SfcI	CTRYAG	1 cut(s)	938
SnaBI	TACGTA	1 cut(s)	748
SphI	GCATGC	1 cut(s)	666
Sse9I	AATT	6 cut(s)	122, 282, 602, 639, 760, 801
SsiI	CCGC	3 cut(s)	459, 666, 794
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	335, 727
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	139, 473
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	2 cut(s)	41, 876
TasI	AATT	6 cut(s)	122, 282, 602, 639, 760, 801
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	3 cut(s)	18, 823, 873
Tru1I	TTAA	6 cut(s)	285, 504, 704, 804, 864, 929
Tru9I	TTAA	6 cut(s)	285, 504, 704, 804, 864, 929
TscAI	CASTG	3 cut(s)	253, 393, 476
TseFI	GTSAC	2 cut(s)	133, 682
TseI	GCWGC	1 cut(s)	937
Tsp45I	GTSAC	2 cut(s)	133, 682
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	3 cut(s)	253, 393, 476
XapI	RAATTY	1 cut(s)	760
XceI	RCATGY	1 cut(s)	666
XspI	CTAG	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.