Rh1DG200800

Pentatricopeptide repeat-containing protein At2g44880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008546
Physical Location & Seq
Reverse (-)
39361692 .. 39362174
483 bp
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UTR
Exon/CDS
Intron
Rh1DG200800.1

Sequence Viewer

Length: 483 bp
ATGGAAAACTTTGGGCTCATTCCACAGATTGAGCATTATGGTTGTATGGTAGATCTTTTAGGAAGGGCAGGGTGCTTGGAGGAAGCTGAGAAGCTGATCAAGAGCATGCCTTACGATGTTAATGGGATAATTTTGAGTTCCTTTCTTTTTGCGTGTGGGTATTGTGAGGATGTCACGAGAGCCAACAAAACTTTAGAGCAGGCTGTCAAACTGGAGCCATGGAATTATGGAAATTATGTTATGTTGAGAAATTTGTATGCGAGAAACAGAAGGTGGAGTGATGCAGATAATATTAAGAGTTCGATGCGGAAGAATCAAGCAGATAAAGAGGTTGGTTATAGTGTTATAGAGGTTGATGGTAGAATCAACCAGTTTGTGGCTGGGGACAGGATGTACACATCTTCGGAAGCTATACATTTGACCTTGCTACAGAGTTGGAAGCACATGATGGGACAAGTCCCATGTTCTATGGCTAAGGTGTGA

Protein Analysis

160

Amino Acids

18.24

Weight (kDa)

6.3

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 57 - 117 7.6e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 376
AciI CCGC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 250
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 376
AluBI AGCT 3 cut(s) 86, 94, 410
AluI AGCT 3 cut(s) 86, 94, 410
ApoI RAATTY 1 cut(s) 250
BanII GRGCYC 1 cut(s) 18
BauI CACGAG 1 cut(s) 175
BccI CCATC 2 cut(s) 350, 442
BclI TGATCA 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 428
BglII AGATCT 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 2 cut(s) 271, 294
BpmI CTGGAG 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 2 cut(s) 216, 370
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 2 cut(s) 175, 396
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 216, 370
BseYI CCCAGC 1 cut(s) 380
BslFI GGGAC 3 cut(s) 398, 443, 465
BslI CCNNNNNNNGG 1 cut(s) 376
BsmFI GGGAC 3 cut(s) 398, 443, 465
Bsp1286I GDGCHC 1 cut(s) 18
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 2 cut(s) 52, 96
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 216
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 2 cut(s) 216, 370
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 52, 96
BssSI CACGAG 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 175
BstAUI TGTACA 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 107, 201
BstDEI CTNAG 2 cut(s) 87, 474
BstDSI CCRYGG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 175, 396
BstKTI GATC 2 cut(s) 55, 99
BstMBI GATC 2 cut(s) 52, 96
BstNSI RCATGY 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 218
BtsCI GGATG 2 cut(s) 175, 396
Cac8I GCNNGC 2 cut(s) 107, 201
Csp6I GTAC 1 cut(s) 394
CviAII CATG 4 cut(s) 106, 219, 445, 462
CviJI RGCY 9 cut(s) 16, 86, 94, 182, 203, 217, 380, 410, 473
CviKI_1 RGCY 9 cut(s) 16, 86, 94, 182, 203, 217, 380, 410, 473
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 2 cut(s) 87, 474
DpnI GATC 2 cut(s) 54, 98
DpnII GATC 2 cut(s) 52, 96
Eco130I CCWWGG 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 4 cut(s) 109, 222, 448, 465
FaqI GGGAC 3 cut(s) 398, 443, 465
FatI CATG 4 cut(s) 105, 218, 444, 461
FbaI TGATCA 1 cut(s) 96
FokI GGATG 2 cut(s) 182, 403
FriOI GRGCYC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 233
Hin1II CATG 4 cut(s) 109, 222, 448, 465
HinfI GANTC 2 cut(s) 313, 363
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 2 cut(s) 100, 175
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 57, 264
HpyCH4V TGCA 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 87, 474
Hsp92II CATG 4 cut(s) 109, 222, 448, 465
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 2 cut(s) 52, 96
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 54, 185, 197, 366, 373, 383
LweI GCATC 2 cut(s) 271, 294
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 54, 98
MboI GATC 2 cut(s) 52, 96
MboII GAAGA 2 cut(s) 322, 393
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 4 cut(s) 129, 223, 232, 250
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 4 cut(s) 73, 160, 322, 343
MseI TTAA 2 cut(s) 120, 294
NcoI CCATGG 1 cut(s) 218
NdeII GATC 2 cut(s) 52, 96
NlaIII CATG 4 cut(s) 109, 222, 448, 465
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 109
PaeI GCATGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 313, 363
PflMI CCANNNNNTGG 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SaqAI TTAA 2 cut(s) 120, 294
Sau3AI GATC 2 cut(s) 52, 96
SduI GDGCHC 1 cut(s) 18
SetI ASST 8 cut(s) 88, 96, 275, 333, 354, 412, 425, 480
SfaNI GCATC 2 cut(s) 271, 294
SfcI CTRYAG 1 cut(s) 428
SphI GCATGC 1 cut(s) 109
Sse9I AATT 4 cut(s) 129, 223, 232, 250
SsiI CCGC 1 cut(s) 307
SspI AATATT 1 cut(s) 292
StyI CCWWGG 1 cut(s) 218
TaqI TCGA 1 cut(s) 302
TasI AATT 4 cut(s) 129, 223, 232, 250
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 2 cut(s) 313, 363
Tru1I TTAA 2 cut(s) 120, 294
Tru9I TTAA 2 cut(s) 120, 294
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
Van91I CCANNNNNTGG 1 cut(s) 376
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.