Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008546

Physical Location & Seq

Genomic Coordinates Reverse (-)

18548349 .. 18549812

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G128300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

GCGGAGACGGGCAATGTCCCCGATGGCTACACATTCACAGCCTTGGCAAAGTCCTGTGGTTTAGATGTGACCATCTGGGAAGGGCAAGAACTTCATTGTCATGTTATTAAAGTTGGGTTGTGCTTAGATTTGTATGAGTCGACTTCATTGGTTGATACGTATGCAAAGTTTGGGAGGATGAGTTTTGCAAGTAAGTTGTTCACTGAAATGACAGTGACAAGTCGAGTATCGTGGACAGCTCTTATTTGTGGGTATGCAAGGTTAGGAGATATGGGTAATGCAAGGAGGCTTTTTGATCAAATGCCTGAGAAGGACTTGGCTGCATTTAATGCTATGATTGATGGTTATGTCAAATTGGGAGATATGGGCCCTGCTCGAAGTTTATTTGATGAGATGACGGATAGGAATGTGGTATCTTGGACCAGTATGATGTATGGTTACTGCCATCATGGTGATGTACAATCTGCTAGATCACTTTTTGATGCCATGGCTGAGAAGAATCTAATTTCTTGGAATGTGATGATTGGGGGTTACAGTCAAAACAAACAGCCCCATGAAGCCTTGAAATTATTTCATGAACTGCAGTCAAATATGTCTCTTGAACTGGATGGCGTGACTGTTGTTAGCATTCTTCCAGCTATTGCAGATTTGGGCGCCTTGGATTTAGGTCTTTGGGTTCACAAGTTTGTAAGACGGAAGAAGCTTGATAGGGTAATCAACATCTGCACTGCGCTTGTTGATATGTACGCAAAACGTGGTGAAATTACAGAGGCCAAAAGACTTTTTGATGAGATGCCTGAAAAGGAAACAGCTTCTTGGAATGCCTTGATAAATGGGTTTGCAGTAAATGGCCATGGCAAGGAGGCACTGGAGGTATTTTTAGAGATGCAGTGCAAAAAGTTTATGCCGAACAATATAACCTTTATTGGTGTTTTGTCTGCTTGTAACCATTGTGGTCTGGTAGAGGAAGGGAAAAGATGGTTTAAAGGAATGGAGGGCTTTGGGCTTATCCGGCAAATTGAGCATTATGGTTGTATGGTTGATCTTTTGGGAAGGGCAGGATGCTTGGAGGAAGTTGAGAAATTGATTGAGAGCATGCCTTACGATGCTAATGGAATAATTTTGAGTTCTTTTCTTTTTGCATGTGGCCATTCTGAGGATGTCACAAGGGCCAACAAAGTTTTAAAGAAGGCAGTCAAAGTGGAGCCATGGAATGATGGAAATTATGTCATGCTCAGAAATTTGTATATCAAGAAGAGAAGGTGGAGTGATGCAGAGGAAATTAAGAGGTTGATGAGGAAGAATCGAGCAAATAAAGAGGTTGGTGGTAGTGTGATAGAGGTTGATGGTAGAATCAAGGAGTTTGTGTCTGGTGACAGGGTGCATGCGTATTCTGAAGCTATACATTTAACCTTGCGGCAGACGTGGAAGCACATGATGGGTGATTTTATAGAAAAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

488

Amino Acids

54.9

Weight (kDa)

6.44

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44880 AT2G44880 AT2G44880 AT2G44880 AT2G44880 AT2G44880
fragaria_vesca	FvH4_7g09950
malus_domestica	MD07G1104700.v1.1 MD07G1105400.v1.1
prunus_persica	Prupe.2G128300_v2.0.a1
pyrus_communis	pycom07g08960
rosa_chinensis	RchiOBHm_Chr1g0347511 RchiOBHm_Chr1g0347541
rosa_laevigata	RLG00000028745
rosa_multiflora	Rmu_ssc0000280.1_g000005
rosa_roxburghii	Rroxscaffold_4G00307740
rosa_rugosa	Rorug01G0187500
rosa_samantha	Rh1AG204700 Rh1BG170500 Rh1CG189800 Rh1DG200800
rosa_wichuraiana	Rw0G013630 Rw1G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	2 cut(s)	2, 1417
AcoI	YGGCCR	2 cut(s)	850, 1147
AcsI	RAATTY	1 cut(s)	1240
AcuI	CTGAAG	1 cut(s)	1416
AcyI	GRCGYC	1 cut(s)	654
AfaI	GTAC	2 cut(s)	459, 746
AfiI	CCNNNNNNNGG	2 cut(s)	859, 1156
AgsI	TTSAA	2 cut(s)	565, 602
AjiI	CACGTC	1 cut(s)	1425
AluBI	AGCT	5 cut(s)	239, 638, 703, 812, 1400
AluI	AGCT	5 cut(s)	239, 638, 703, 812, 1400
Alw26I	GTCTC	1 cut(s)	600
AoxI	GGCC	5 cut(s)	367, 771, 850, 1147, 1170
ApaI	GGGCCC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	1240
AspLEI	GCGC	2 cut(s)	656, 733
AspS9I	GGNCC	4 cut(s)	367, 368, 420, 1170
AsuHPI	GGTGA	4 cut(s)	464, 770, 1385, 1454
AvaII	GGWCC	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	371
BalI	TGGCCA	2 cut(s)	852, 1149
BanI	GGYRCC	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	9 cut(s)	17, 80, 335, 453, 602, 972, 1211, 1340, 1432
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	657
BisI	GCNGC	2 cut(s)	321, 1418
BlsI	GCNGC	2 cut(s)	322, 1419
Bme18I	GGWCC	1 cut(s)	420
BmgBI	CACGTC	1 cut(s)	1425
BmgT120I	GGNCC	4 cut(s)	367, 368, 420, 1170
BmiI	GGNNCC	3 cut(s)	369, 655, 1206
BmsI	GCATC	6 cut(s)	472, 783, 876, 1052, 1096, 1261
BpmI	CTGGAG	1 cut(s)	890
BsaAI	YACGTR	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	654
BsaJI	CCNNGG	5 cut(s)	42, 486, 657, 853, 1208
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 1352, 1382
Bsc4I	CCNNNNNNNGG	2 cut(s)	859, 1156
Bse1I	ACTGG	3 cut(s)	423, 609, 873
Bse3DI	GCAATG	1 cut(s)	19
BseDI	CCNNGG	5 cut(s)	42, 486, 657, 853, 1208
BseGI	GGATG	4 cut(s)	183, 613, 1067, 1165
BseLI	CCNNNNNNNGG	2 cut(s)	859, 1156
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	4 cut(s)	297, 483, 1146, 1249
BseNI	ACTGG	3 cut(s)	423, 609, 873
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	709
BshFI	GGCC	5 cut(s)	369, 773, 852, 1149, 1172
BshNI	GGYRCC	1 cut(s)	653
BsiSI	CCGG	1 cut(s)	1012
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	2 cut(s)	859, 1156
BsmAI	GTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	2 cut(s)	627, 826
BsnI	GGCC	5 cut(s)	369, 773, 852, 1149, 1172
Bsp120I	GGGCCC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp1407I	TGTACA	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	295, 470, 1042
Bsp19I	CCATGG	3 cut(s)	486, 853, 1208
BspACI	CCGC	2 cut(s)	2, 1417
BspANI	GGCC	5 cut(s)	369, 773, 852, 1149, 1172
BspCNI	CTCAG	4 cut(s)	298, 484, 1147, 1248
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	369, 655, 1206
BspMAI	CTGCAG	1 cut(s)	585
BspT107I	GGYRCC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	457
BsrI	ACTGG	3 cut(s)	423, 609, 873
BssECI	CCNNGG	5 cut(s)	42, 486, 657, 853, 1208
BssMI	GATC	3 cut(s)	295, 470, 1042
BssNI	GRCGYC	1 cut(s)	654
BssT1I	CCWWGG	5 cut(s)	42, 486, 657, 853, 1208
Bst4CI	ACNGT	3 cut(s)	214, 536, 619
Bst6I	CTCTTC	1 cut(s)	1250
BstACI	GRCGYC	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	1097, 1386
BstDEI	CTNAG	5 cut(s)	124, 306, 492, 1155, 1235
BstDSI	CCRYGG	3 cut(s)	486, 853, 1208
BstF5I	GGATG	4 cut(s)	183, 613, 1067, 1165
BstH2I	RGCGCY	1 cut(s)	657
BstHHI	GCGC	2 cut(s)	656, 733
BstKTI	GATC	3 cut(s)	298, 473, 1045
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	3 cut(s)	295, 470, 1042
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 1012, 1021
BstNSI	RCATGY	3 cut(s)	1099, 1146, 1388
BstSFI	CTRYAG	1 cut(s)	581
BstSLI	GKGCMC	1 cut(s)	371
BstSNI	TACGTA	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	307
BsuRI	GGCC	5 cut(s)	369, 773, 852, 1149, 1172
BtgI	CCRYGG	3 cut(s)	486, 853, 1208
BtrI	CACGTC	1 cut(s)	1425
BtsCI	GGATG	4 cut(s)	183, 613, 1067, 1165
BtsI	GCAGTG	2 cut(s)	726, 896
BtsIMutI	CAGTG	5 cut(s)	201, 219, 726, 866, 896
Cac8I	GCNNGC	2 cut(s)	1097, 1386
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	2 cut(s)	656, 733
Cfr13I	GGNCC	4 cut(s)	367, 368, 420, 1170
Csp6I	GTAC	2 cut(s)	458, 745
CviQI	GTAC	2 cut(s)	458, 745
DdeI	CTNAG	5 cut(s)	124, 306, 492, 1155, 1235
DinI	GGCGCC	1 cut(s)	655
DpnI	GATC	3 cut(s)	297, 472, 1044
DpnII	GATC	3 cut(s)	295, 470, 1042
DraI	TTTAAA	2 cut(s)	985, 1185
EaeI	YGGCCR	2 cut(s)	850, 1147
Eam1104I	CTCTTC	1 cut(s)	1250
EarI	CTCTTC	1 cut(s)	1250
Eco105I	TACGTA	1 cut(s)	159
Eco130I	CCWWGG	5 cut(s)	42, 486, 657, 853, 1208
Eco24I	GRGCYC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	1416
EcoO109I	RGGNCCY	1 cut(s)	368
EcoT14I	CCWWGG	5 cut(s)	42, 486, 657, 853, 1208
EcoT38I	GRGCYC	1 cut(s)	371
EgeI	GGCGCC	1 cut(s)	655
EheI	GGCGCC	1 cut(s)	655
ErhI	CCWWGG	5 cut(s)	42, 486, 657, 853, 1208
FaqI	GGGAC	1 cut(s)	2
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	321, 1418
FokI	GGATG	4 cut(s)	190, 620, 1074, 1172
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	321, 1418
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	2 cut(s)	655, 732
GluI	GCNGC	2 cut(s)	321, 1418
GsuI	CTGGAG	1 cut(s)	890
HaeII	RGCGCY	1 cut(s)	657
HaeIII	GGCC	5 cut(s)	369, 773, 852, 1149, 1172
HapII	CCGG	1 cut(s)	1012
HhaI	GCGC	2 cut(s)	656, 733
Hin1I	GRCGYC	1 cut(s)	654
Hin6I	GCGC	2 cut(s)	654, 731
HinP1I	GCGC	2 cut(s)	654, 731
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	4 cut(s)	137, 499, 1303, 1353
HpaII	CCGG	1 cut(s)	1012
HphI	GGTGA	4 cut(s)	464, 770, 1385, 1454
Hpy166II	GTNNAC	4 cut(s)	141, 201, 234, 679
Hpy188I	TCNGA	3 cut(s)	1156, 1238, 1396
Hpy188III	TCNNGA	3 cut(s)	575, 599, 1252
Hpy8I	GTNNAC	4 cut(s)	141, 201, 234, 679
HpyAV	CCTTC	6 cut(s)	74, 304, 962, 1047, 1183, 1254
HpyCH4III	ACNGT	3 cut(s)	214, 536, 619
HpyCH4IV	ACGT	3 cut(s)	158, 754, 1424
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 1012, 1021
HpyF3I	CTNAG	5 cut(s)	124, 306, 492, 1155, 1235
HpySE526I	ACGT	3 cut(s)	158, 754, 1424
Hsp92I	GRCGYC	1 cut(s)	654
HspAI	GCGC	2 cut(s)	654, 731
KasI	GGCGCC	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	295, 470, 1042
LmnI	GCTCC	1 cut(s)	1204
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	6 cut(s)	472, 783, 876, 1052, 1096, 1261
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	3 cut(s)	158, 754, 1424
MaeIII	GTNAC	8 cut(s)	67, 214, 437, 530, 613, 944, 1162, 1373
MalI	GATC	3 cut(s)	297, 472, 1044
MboI	GATC	3 cut(s)	295, 470, 1042
MboII	GAAGA	5 cut(s)	508, 623, 709, 1267, 1312
MhlI	GDGCHC	1 cut(s)	371
MlsI	TGGCCA	2 cut(s)	852, 1149
MluNI	TGGCCA	2 cut(s)	852, 1149
Mly113I	GGCGCC	1 cut(s)	654
MlyI	GAGTC	1 cut(s)	146
Mox20I	TGGCCA	2 cut(s)	852, 1149
MscI	TGGCCA	2 cut(s)	852, 1149
MseI	TTAA	6 cut(s)	108, 327, 984, 1184, 1284, 1409
MslI	CAYNNNNRTG	4 cut(s)	99, 206, 450, 453
Msp20I	TGGCCA	2 cut(s)	852, 1149
MspI	CCGG	1 cut(s)	1012
Mva1269I	GAATGC	2 cut(s)	627, 826
MwoI	GCNNNNNNNGC	3 cut(s)	329, 1012, 1021
NarI	GGCGCC	1 cut(s)	654
NcoI	CCATGG	3 cut(s)	486, 853, 1208
NdeII	GATC	3 cut(s)	295, 470, 1042
NlaIV	GGNNCC	3 cut(s)	369, 655, 1206
NmuCI	GTSAC	5 cut(s)	67, 214, 613, 1162, 1373
NspI	RCATGY	3 cut(s)	1099, 1146, 1388
PaeI	GCATGC	2 cut(s)	1099, 1388
PagI	TCATGA	1 cut(s)	574
PctI	GAATGC	2 cut(s)	627, 826
PfeI	GAWTC	3 cut(s)	499, 1303, 1353
PkrI	GCNGC	2 cut(s)	322, 1419
PleI	GAGTC	1 cut(s)	145
PluTI	GGCGCC	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	369, 655, 1206
PspOMI	GGGCCC	1 cut(s)	367
PspPI	GGNCC	4 cut(s)	367, 368, 420, 1170
PstI	CTGCAG	1 cut(s)	585
RsaI	GTAC	2 cut(s)	459, 746
RsaNI	GTAC	2 cut(s)	458, 745
RseI	CAYNNNNRTG	4 cut(s)	99, 206, 450, 453
SalI	GTCGAC	1 cut(s)	139
SaqAI	TTAA	6 cut(s)	108, 327, 984, 1184, 1284, 1409
SatI	GCNGC	2 cut(s)	321, 1418
Sau3AI	GATC	3 cut(s)	295, 470, 1042
Sau96I	GGNCC	4 cut(s)	367, 368, 420, 1170
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	6 cut(s)	472, 783, 876, 1052, 1096, 1261
SfcI	CTRYAG	1 cut(s)	581
SfoI	GGCGCC	1 cut(s)	655
SinI	GGWCC	1 cut(s)	420
SmiMI	CAYNNNNRTG	4 cut(s)	99, 206, 450, 453
SnaBI	TACGTA	1 cut(s)	159
SphI	GCATGC	2 cut(s)	1099, 1388
SsiI	CCGC	2 cut(s)	2, 1417
SspDI	GGCGCC	1 cut(s)	653
SspMI	CTAG	1 cut(s)	468
StyI	CCWWGG	5 cut(s)	42, 486, 657, 853, 1208
TaaI	ACNGT	3 cut(s)	214, 536, 619
TaiI	ACGT	3 cut(s)	161, 757, 1427
TaqI	TCGA	4 cut(s)	140, 223, 376, 1306
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	1 cut(s)	1420
TfiI	GAWTC	3 cut(s)	499, 1303, 1353
Tru1I	TTAA	6 cut(s)	108, 327, 984, 1184, 1284, 1409
Tru9I	TTAA	6 cut(s)	108, 327, 984, 1184, 1284, 1409
TscAI	CASTG	5 cut(s)	208, 219, 733, 873, 896
TseFI	GTSAC	5 cut(s)	67, 214, 613, 1162, 1373
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	5 cut(s)	67, 214, 613, 1162, 1373
TspDTI	ATGAA	5 cut(s)	83, 135, 563, 570, 591
TspGWI	ACGGA	2 cut(s)	413, 709
TspRI	CASTG	5 cut(s)	208, 219, 733, 873, 896
VpaK11BI	GGWCC	1 cut(s)	420
XapI	RAATTY	1 cut(s)	1240
XceI	RCATGY	3 cut(s)	1099, 1146, 1388
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.