RchiOBHm_Chr1g0347511

Pentatricopeptide repeat-containing protein At2g44880-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
40099092 .. 40101068
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57361

Sequence Viewer

Length: 1677 bp
ATGCCTTCATCCTCCGAAACGCCCTCGAAACCAACCTCAATGTTCATCACCACCTGCTCCTCCTCCCCCTCGCACCTGATCAAACACGCCCGCCGCGTCTTCGATCACCGACCCAATAAGCATGACACGTTTCTCTGCAATGCCATGATCAGAGCCCACATGGCCCAATTCGCCGAGTCTTTCGCTCTTTATAGAGATCTTAGACGGGACACGGGTTTCGAGCCGGATGGGTACACATTCACTGCTCTGGCCAAGTCGTGCGGGTTAGATGGGGACAGATCCGAAGGAGAAGAGATTCATTGTCATGCTGTTAAGACTGGGCTGTCTTTGGATTTGTATGTTTCGACGTCTTTGGTTGACATGTATGTGAAGTTTGGGACGATGGGTTCCGCAAGGAAGGTGTTTGATGAAATGACTGAGAGAAACATAGTGTCGTGGACGGCTCTTGTTTGCGGGTATGCGAGGACGGGAGATATGGGTAGTGCGAGGAGGCTTTTTGATGAAATTCCTGAGAGGGACTCGGCCGCGTTTAATGCGTTGATTGATGGATATGTCAAGTTGGGGGAAATGGGCTCGGCTCAAAGTTTGTTTGATGAGATGAGGGATAGGAATGTGGTGACTTGGACTAGTATGATATACGGTTACTGCCATCGAGGTGATGTAGAGGCCGCTAAATCACTCTTTGATTCTATGCCCAAGAAGAATCTTATTTCTTGGAATGTGATGATTGGTGGTTATTGCCAAAACAAACGTCCCCGTGAAGCCGTGAGATTGTTTCATGAAATGCAGTCAACTACATCGCTTGAACCAGATGCTGTAACGGTTGTGAGCATTCTTCCGGCTATAGCTGATTTGGGTGCTTTGGATTTAGGGCATTGGGTTCACGAGTTTGTACAGAGGAAGAAGCTTGATAGGCTAACCAATATCTGCACTGCGCTTGTGGATATGTATGCAAAATGTGGTGAAATAAAAAAGGCCAAAAGACTCTTTGATGAGATGCCTGAAAAAGAAACGGCTTCTTGGAATGCTTTGATAAATGGGTTTGCAGTCAATGGCTATGGAAAGGAGGCACTGGATGTATTTTTAGAGATGCAACGAGAAAAGTTTAAGCCTAACAATATAACCTTTGTCGGTGTTCTGTCCGCTTGTAACCATTGTGGTCTGGTAGAGGAAGGGAAATTTTGGTTTAGGAAAATGGAAAACTTTGGGCTCATTCCACAGATTGAGCATTATGGTTGTATGGTAGATCTTTTAGGAAGGGCAGGGTGCTTGGAGGAAGCTGAGAAGCTGATCAAGAGCATGCCTTACGATGTGAATGGGATAATTTTAAGTTCCTTTCTTTTTGCATGTGGGTATTGTGAGGATGTCATGAGAGCCAACAAAACTTTAGAGCAGGCTGTCAAACTGGAGCCATGGAATTATGGAAATTATGTTATGTTGAGAAATTTGTATGCCAGAAACAGAAGGTGGAGTGATGCAGATAATATTAAGAGTTCGATGCGGAAGAATCAAGCAGATAAAGAGGTTGGTTATAGTGTTATAGAGGTTGATGGTAGAATCAAGCAGTTTGTGGCTGGGGACAGGATGTACACATCTTCGGAAGCTATACATTTGACCTTGCTACAGAGTTGGAAGCACATGATGGGACAAGTCCCGTGTTCTATGGCTAAGGTGTGA

Protein Analysis

558

Amino Acids

63.07

Weight (kDa)

6.74

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 173 - 205 6.9e-07 PPR repeat family
PPR PF01535 176 - 205 4e-07 PPR repeat
PPR_2 PF13041 203 - 236 6.1e-09 PPR repeat family
PPR_1 PF12854 204 - 231 1.9e-07 PPR repeat
PPR PF01535 206 - 235 1.2e-08 PPR repeat
PPR_2 PF13041 235 - 279 1.4e-10 PPR repeat family
PPR_1 PF12854 235 - 263 2.1e-06 PPR repeat
PPR PF01535 237 - 264 5.9e-09 PPR repeat
PPR_2 PF13041 338 - 383 1.4e-10 PPR repeat family
PPR PF01535 340 - 368 1.4e-07 PPR repeat
E_motif PF20431 455 - 515 1e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
AasI GACNNNNNNGTC 1 cut(s) 322
AatII GACGTC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 62
AccII CGCG 2 cut(s) 96, 527
AciI CCGC 9 cut(s) 91, 94, 261, 390, 453, 525, 669, 1143, 1501
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 2 cut(s) 249, 522
AcsI RAATTY 3 cut(s) 504, 1178, 1444
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 3 cut(s) 233, 894, 1589
AflIII ACRYGT 2 cut(s) 126, 360
AgsI TTSAA 1 cut(s) 806
AhlI ACTAGT 1 cut(s) 626
AloI GAACNNNNNNTCC 2 cut(s) 370, 402
AluBI AGCT 5 cut(s) 848, 907, 1280, 1288, 1604
AluI AGCT 5 cut(s) 848, 907, 1280, 1288, 1604
AlwI GGATC 1 cut(s) 273
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 5 cut(s) 162, 249, 522, 666, 975
ApoI RAATTY 3 cut(s) 504, 1178, 1444
ArsI GACNNNNNNTTYG 4 cut(s) 200, 232, 736, 768
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 937
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 5 cut(s) 40, 98, 628, 668, 974
BalI TGGCCA 1 cut(s) 251
BanII GRGCYC 3 cut(s) 157, 575, 1212
BauI CACGAG 1 cut(s) 884
BbsI GAAGAC 1 cut(s) 91
BccI CCATC 7 cut(s) 221, 263, 376, 539, 657, 1544, 1636
BceAI ACGGC 3 cut(s) 456, 749, 1029
BclI TGATCA 3 cut(s) 78, 147, 1290
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 2 cut(s) 843, 1622
BfuAI ACCTGC 1 cut(s) 62
BglI GCCNNNNNGGC 1 cut(s) 161
BglII AGATCT 2 cut(s) 196, 1246
BisI GCNGC 3 cut(s) 94, 525, 669
BlsI GCNGC 3 cut(s) 95, 526, 670
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 388, 1410
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 5 cut(s) 802, 987, 1080, 1465, 1488
BmuI ACTGGG 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 1 cut(s) 1427
Bpu10I CCTNAGC 1 cut(s) 1668
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 1412
Bse1I ACTGG 3 cut(s) 322, 1077, 1410
Bse3DI GCAATG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 1412
BseGI GGATG 5 cut(s) 8, 232, 1081, 1369, 1590
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 3 cut(s) 408, 501, 1272
BseNI ACTGG 3 cut(s) 322, 1077, 1410
BseRI GAGGAG 3 cut(s) 49, 52, 502
BseX3I CGGCCG 1 cut(s) 522
BseYI CCCAGC 1 cut(s) 1574
BsgI GTGCAG 1 cut(s) 913
Bsh1236I CGCG 2 cut(s) 96, 527
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 5 cut(s) 164, 251, 524, 668, 977
BsiEI CGRYCG 1 cut(s) 525
BsiSI CCGG 2 cut(s) 224, 839
BslFI GGGAC 8 cut(s) 221, 287, 391, 530, 738, 1592, 1637, 1659
BsmFI GGGAC 8 cut(s) 221, 287, 391, 530, 738, 1592, 1637, 1659
BsmI GAATGC 2 cut(s) 831, 1030
BsnI GGCC 5 cut(s) 164, 251, 524, 668, 977
Bsp1286I GDGCHC 3 cut(s) 157, 575, 1212
Bsp1407I TGTACA 2 cut(s) 892, 1587
Bsp143I GATC 7 cut(s) 78, 103, 147, 196, 278, 1246, 1290
Bsp19I CCATGG 1 cut(s) 1412
BspACI CCGC 9 cut(s) 91, 94, 261, 390, 453, 525, 669, 1143, 1501
BspANI GGCC 5 cut(s) 164, 251, 524, 668, 977
BspCNI CTCAG 3 cut(s) 409, 502, 1273
BspFNI CGCG 2 cut(s) 96, 527
BspHI TCATGA 2 cut(s) 778, 1368
BspLI GGNNCC 2 cut(s) 388, 1410
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 145
BsrGI TGTACA 2 cut(s) 892, 1587
BsrI ACTGG 3 cut(s) 322, 1077, 1410
BssECI CCNNGG 1 cut(s) 1412
BssMI GATC 7 cut(s) 78, 103, 147, 196, 278, 1246, 1290
BssNI GRCGYC 1 cut(s) 347
BssSI CACGAG 1 cut(s) 884
BssT1I CCWWGG 1 cut(s) 1412
Bst2BI CACGAG 1 cut(s) 884
Bst4CI ACNGT 2 cut(s) 641, 823
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 347
BstAUI TGTACA 2 cut(s) 892, 1587
BstC8I GCNNGC 3 cut(s) 91, 1301, 1395
BstDEI CTNAG 5 cut(s) 200, 417, 510, 1281, 1668
BstDSI CCRYGG 1 cut(s) 1412
BstF5I GGATG 5 cut(s) 8, 232, 1081, 1369, 1590
BstFNI CGCG 2 cut(s) 96, 527
BstHHI GCGC 1 cut(s) 937
BstKTI GATC 7 cut(s) 81, 106, 150, 199, 281, 1249, 1293
BstMBI GATC 7 cut(s) 78, 103, 147, 196, 278, 1246, 1290
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 4 cut(s) 161, 170, 533, 913
BstNSI RCATGY 3 cut(s) 364, 1303, 1350
BstSFI CTRYAG 2 cut(s) 843, 1622
BstUI CGCG 2 cut(s) 96, 527
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 3 cut(s) 196, 278, 1246
BstYI RGATCY 3 cut(s) 196, 278, 1246
BstZI CGGCCG 1 cut(s) 522
BsuRI GGCC 5 cut(s) 164, 251, 524, 668, 977
BtgI CCRYGG 1 cut(s) 1412
BtgZI GCGATG 1 cut(s) 783
BtsCI GGATG 5 cut(s) 8, 232, 1081, 1369, 1590
BtsI GCAGTG 2 cut(s) 240, 930
BtsIMutI CAGTG 3 cut(s) 240, 930, 1070
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 3 cut(s) 91, 1301, 1395
CaiI CAGNNNCTG 1 cut(s) 815
CciI TCATGA 2 cut(s) 778, 1368
CfoI GCGC 1 cut(s) 937
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 85
Csp6I GTAC 3 cut(s) 232, 893, 1588
CviQI GTAC 3 cut(s) 232, 893, 1588
DdeI CTNAG 5 cut(s) 200, 417, 510, 1281, 1668
DpnI GATC 7 cut(s) 80, 105, 149, 198, 280, 1248, 1292
DpnII GATC 7 cut(s) 78, 103, 147, 196, 278, 1246, 1290
DrdI GACNNNNNNGTC 1 cut(s) 322
DseDI GACNNNNNNGTC 1 cut(s) 322
EaeI YGGCCR 2 cut(s) 249, 522
EagI CGGCCG 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EclXI CGGCCG 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 1412
Eco24I GRGCYC 3 cut(s) 157, 575, 1212
Eco52I CGGCCG 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 1412
EcoT38I GRGCYC 3 cut(s) 157, 575, 1212
ErhI CCWWGG 1 cut(s) 1412
FaqI GGGAC 8 cut(s) 221, 287, 391, 530, 738, 1592, 1637, 1659
FauI CCCGC 3 cut(s) 98, 254, 446
FbaI TGATCA 3 cut(s) 78, 147, 1290
Fnu4HI GCNGC 3 cut(s) 94, 525, 669
FokI GGATG 4 cut(s) 239, 1088, 1376, 1597
FriOI GRGCYC 3 cut(s) 157, 575, 1212
Fsp4HI GCNGC 3 cut(s) 94, 525, 669
FspBI CTAG 1 cut(s) 627
GlaI GCGC 1 cut(s) 936
GluI GCNGC 3 cut(s) 94, 525, 669
GsaI CCCAGC 1 cut(s) 1578
GsuI CTGGAG 1 cut(s) 1427
HaeIII GGCC 5 cut(s) 164, 251, 524, 668, 977
HapII CCGG 2 cut(s) 224, 839
HgaI GACGC 1 cut(s) 85
HhaI GCGC 1 cut(s) 937
Hin1I GRCGYC 1 cut(s) 347
Hin6I GCGC 1 cut(s) 935
HinP1I GCGC 1 cut(s) 935
HincII GTYRAC 2 cut(s) 358, 792
HindII GTYRAC 2 cut(s) 358, 792
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 8 cut(s) 176, 295, 518, 686, 703, 984, 1507, 1557
HpaII CCGG 2 cut(s) 224, 839
HphI GGTGA 5 cut(s) 40, 98, 628, 668, 974
Hpy166II GTNNAC 6 cut(s) 234, 358, 438, 792, 883, 1590
Hpy188I TCNGA 4 cut(s) 16, 152, 283, 1600
Hpy188III TCNNGA 5 cut(s) 509, 779, 884, 1294, 1369
Hpy8I GTNNAC 6 cut(s) 234, 358, 438, 792, 883, 1590
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 6 cut(s) 15, 278, 391, 1166, 1251, 1458
HpyCH4III ACNGT 2 cut(s) 641, 823
HpyCH4IV ACGT 3 cut(s) 128, 347, 751
HpyCH4V TGCA 8 cut(s) 138, 787, 930, 953, 1046, 1093, 1346, 1478
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 170, 533, 913
HpyF3I CTNAG 5 cut(s) 200, 417, 510, 1281, 1668
HpySE526I ACGT 3 cut(s) 128, 347, 751
Hsp92I GRCGYC 1 cut(s) 347
HspAI GCGC 1 cut(s) 935
Ksp22I TGATCA 3 cut(s) 78, 147, 1290
Kzo9I GATC 7 cut(s) 78, 103, 147, 196, 278, 1246, 1290
LmnI GCTCC 2 cut(s) 62, 1408
LweI GCATC 5 cut(s) 802, 987, 1080, 1465, 1488
MaeI CTAG 1 cut(s) 627
MaeII ACGT 3 cut(s) 128, 347, 751
MaeIII GTNAC 4 cut(s) 616, 641, 817, 1148
MalI GATC 7 cut(s) 80, 105, 149, 198, 280, 1248, 1292
MboI GATC 7 cut(s) 78, 103, 147, 196, 278, 1246, 1290
MboII GAAGA 7 cut(s) 91, 302, 712, 827, 913, 1516, 1587
MflI RGATCY 3 cut(s) 196, 278, 1246
MhlI GDGCHC 3 cut(s) 157, 575, 1212
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 7 cut(s) 167, 504, 1178, 1323, 1417, 1426, 1444
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 3 cut(s) 185, 512, 978
MmeI TCCRAC 1 cut(s) 1610
Mox20I TGGCCA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 294
MscI TGGCCA 1 cut(s) 251
MseI TTAA 5 cut(s) 312, 531, 1107, 1328, 1488
MslI CAYNNNNRTG 3 cut(s) 303, 365, 654
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 2 cut(s) 224, 839
Mva1269I GAATGC 2 cut(s) 831, 1030
MvnI CGCG 2 cut(s) 96, 527
MwoI GCNNNNNNNGC 4 cut(s) 161, 170, 533, 913
NcoI CCATGG 1 cut(s) 1412
NdeII GATC 7 cut(s) 78, 103, 147, 196, 278, 1246, 1290
NlaIV GGNNCC 2 cut(s) 388, 1410
NmeAIII GCCGAG 3 cut(s) 199, 500, 554
NmuCI GTSAC 1 cut(s) 616
NspI RCATGY 3 cut(s) 364, 1303, 1350
PaeI GCATGC 1 cut(s) 1303
PagI TCATGA 2 cut(s) 778, 1368
PaqCI CACCTGC 1 cut(s) 62
PciI ACATGT 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 2 cut(s) 831, 1030
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 5 cut(s) 295, 686, 703, 1507, 1557
PkrI GCNGC 3 cut(s) 95, 526, 670
PleI GAGTC 3 cut(s) 184, 512, 978
PpsI GAGTC 3 cut(s) 184, 512, 978
PscI ACATGT 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 1574
PspN4I GGNNCC 2 cut(s) 388, 1410
PspPI GGNCC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 3 cut(s) 196, 278, 1246
RsaI GTAC 3 cut(s) 233, 894, 1589
RsaNI GTAC 3 cut(s) 232, 893, 1588
RseI CAYNNNNRTG 3 cut(s) 303, 365, 654
SaqAI TTAA 5 cut(s) 312, 531, 1107, 1328, 1488
SatI GCNGC 3 cut(s) 94, 525, 669
Sau3AI GATC 7 cut(s) 78, 103, 147, 196, 278, 1246, 1290
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 3 cut(s) 185, 512, 978
SduI GDGCHC 3 cut(s) 157, 575, 1212
SfaNI GCATC 5 cut(s) 802, 987, 1080, 1465, 1488
SfcI CTRYAG 2 cut(s) 843, 1622
SmiMI CAYNNNNRTG 3 cut(s) 303, 365, 654
SpeI ACTAGT 1 cut(s) 626
SphI GCATGC 1 cut(s) 1303
Sse9I AATT 7 cut(s) 167, 504, 1178, 1323, 1417, 1426, 1444
SsiI CCGC 9 cut(s) 91, 94, 261, 390, 453, 525, 669, 1143, 1501
SspI AATATT 1 cut(s) 1486
SspMI CTAG 1 cut(s) 627
StyI CCWWGG 1 cut(s) 1412
TaaI ACNGT 2 cut(s) 641, 823
TaiI ACGT 3 cut(s) 131, 350, 754
TaqI TCGA 6 cut(s) 26, 102, 219, 344, 652, 1496
TasI AATT 7 cut(s) 167, 504, 1178, 1323, 1417, 1426, 1444
TatI WGTACW 2 cut(s) 892, 1587
TauI GCSGC 3 cut(s) 96, 527, 671
TfiI GAWTC 5 cut(s) 295, 686, 703, 1507, 1557
Tru1I TTAA 5 cut(s) 312, 531, 1107, 1328, 1488
Tru9I TTAA 5 cut(s) 312, 531, 1107, 1328, 1488
TscAI CASTG 3 cut(s) 247, 937, 1077
TseFI GTSAC 1 cut(s) 616
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 6 cut(s) 34, 287, 423, 516, 767, 795
TspRI CASTG 3 cut(s) 247, 937, 1077
XapI RAATTY 3 cut(s) 504, 1178, 1444
XceI RCATGY 3 cut(s) 364, 1303, 1350
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 1 cut(s) 627
ZraI GACGTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.