MD07G1111600.v1.1

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015686
Physical Location & Seq
Reverse (-)
12861541 .. 12865579
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1111600.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGGAAATAGGTGGGAACATGGACATGTTAAGCCATGATGTTAACAACTTTAGCAGTAGAGGGCAAAATGGTAGTAATAACTCACAACTTCCTAATAGTTGGGGTATATGGGATACTACAACTACTAGTCATACTACTGCTGCTCCCACTAACAACAACAACCACGTATTGTACTCCACGGCGGCTACAGCCGTCACTGTTGCCGCCATCGGGGAGGAGGCTTCTAGCTCTTCTACCACTGGTGGTCACGCTCTCTTCACGGGTCATCCCTTGCATCATCAGTTCTCTAATATGTACAGTTGTTGGGCAGATCATGGAGGCGGGCCCCACTTCCACCAGGATCCACACCTGATGTGCTTGAAGCTGGGGAAGAGGCACTACTTTGAGGATCATGGAAATCATGCTCCGCCTCTGGATGAGCGGCACGTAGCGGGATTCCCAGTGGGACTGATGAGCAAGAAAGGCAAAGCAGCGGCAGCAGCAGCGCAGTTGTATGGTGCTGCGCAGCCGTTGGCGTTGAAGGTGGTGCCACGGTGTCAGGTGGAGGGGTGCCACGTGGCGCTGTTGAACGCGAAGGAGTACCACCGGAGGCACAAAGTGTGTGCGATGCACTCCAAGGCTTCCAGGGTCACCGTCTTGGGACAAGACCAGCGTTTCTGTCAGCAGTGCAGCAGGTTCCATGTAGTGTCAGAGTTTGACGAGTCGAAAAGGAGTTGCAGGAGGAGGTTAGCAGGGCACAATGAGCGAAGAAGAAAGAGCTCTAATGATCCTCTTGCCAGAAGCTCTTCTCAAGACAAGAAGTTGATGACTGGGAGGTTTCAATACCTATCTTCTATGACAGGACGTGCTCTCTCTCTTCTGTCATCCAAGACTACGCTTGACTCTTGGGTATCTACATCTGATCTCTCCTCAAGGTCCAGCACTGCACTTCGTGAGCTCATTGCAGAAAACCGCGCCGCCAACTTGGCTCGCCAGCTCATGTCGTCGGACAGAAACTGGGACTCATCATCCCATAACAACAATGCAACAGAAGACTTGTTTTGTGATCATGGACAATCATGGTCTAACTCACTTGAGCCCCACCAGCACCAGATGTTTCCTGAAAATCAACATGGTTGGGACAGGTTCCATGAAAGTAGTGGGGCGCATTTAACGCTCGATCTCAGGCGGCCTCCGAGTCAAGCATACGGATTTATGTCTGAAAGGGCCAAAACAAAGGCTGAAGAAGATCAAGAGTGTGACTTGTGGAACTCCTTTCAGGGAACTAGTGTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

426

Amino Acids

47.18

Weight (kDa)

8.31

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 179 - 252 6.6e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10680
malus_domestica MD07G1111600.v1.1
prunus_persica Prupe.2G135000_v2.0.a1
pyrus_communis pycom07g09650
rosa_chinensis RchiOBHm_Chr1g0348611
rosa_laevigata RLG00000028636
rosa_multiflora Rmu_sc0008668.1_g000011 Rmu_sc0008668.1_g000012
rosa_roxburghii Rroxscaffold_4G00306890
rosa_rugosa Rorug01G0195700
rosa_samantha Rh1AG213500 Rh1BG179900 Rh1CG197800 Rh1CG197900 Rh1DG209900
rosa_wichuraiana Rw1G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 663
AccB1I GGYRCC 2 cut(s) 526, 549
AccBSI CCGCTC 1 cut(s) 421
AccII CGCG 2 cut(s) 572, 954
AclWI GGATC 4 cut(s) 335, 348, 396, 761
AcuI CTGAAG 1 cut(s) 1242
AcvI CACGTG 1 cut(s) 556
AdeI CACNNNGTG 2 cut(s) 598, 932
AfaI GTAC 3 cut(s) 173, 296, 581
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 4 cut(s) 361, 520, 568, 821
AhlI ACTAGT 2 cut(s) 125, 1265
AjiI CACGTC 1 cut(s) 845
AjnI CCWGG 2 cut(s) 336, 623
AluBI AGCT 6 cut(s) 228, 364, 759, 783, 937, 976
AluI AGCT 6 cut(s) 228, 364, 759, 783, 937, 976
Alw21I GWGCWC 3 cut(s) 761, 850, 939
AlwI GGATC 4 cut(s) 335, 348, 396, 761
AlwNI CAGNNNCTG 1 cut(s) 996
AoxI GGCC 3 cut(s) 323, 1169, 1206
ApaI GGGCCC 1 cut(s) 327
ApeKI GCWGC 8 cut(s) 140, 470, 476, 479, 482, 500, 505, 669
Asp700I GAANNNNTTC 1 cut(s) 784
AspLEI GCGC 5 cut(s) 487, 505, 562, 956, 1147
AspS9I GGNCC 4 cut(s) 323, 324, 915, 1206
AsuHPI GGTGA 1 cut(s) 622
AvaII GGWCC 1 cut(s) 915
BaeGI GKGCMC 2 cut(s) 327, 738
BamHI GGATCC 1 cut(s) 340
BanI GGYRCC 2 cut(s) 526, 549
BanII GRGCYC 4 cut(s) 327, 761, 939, 1080
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BbrPI CACGTG 1 cut(s) 556
BbsI GAAGAC 1 cut(s) 1038
Bbv12I GWGCWC 3 cut(s) 761, 850, 939
BbvI GCAGC 8 cut(s) 127, 482, 487, 488, 491, 494, 517, 681
BccI CCATC 1 cut(s) 215
BceAI ACGGC 3 cut(s) 176, 195, 493
BciT130I CCWGG 2 cut(s) 338, 625
BciVI GTATCC 1 cut(s) 106
BclI TGATCA 1 cut(s) 1045
BcuI ACTAGT 2 cut(s) 125, 1265
BfaI CTAG 3 cut(s) 126, 225, 1266
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 563
BfuAI ACCTGC 1 cut(s) 663
BfuI GTATCC 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 965
Bme1390I CCNGG 2 cut(s) 338, 625
Bme18I GGWCC 1 cut(s) 915
BmgBI CACGTC 1 cut(s) 845
BmgT120I GGNCC 4 cut(s) 323, 324, 915, 1206
BmiI GGNNCC 7 cut(s) 325, 326, 342, 528, 551, 677, 1127
BmrFI CCNGG 2 cut(s) 338, 625
BmrI ACTGGG 3 cut(s) 434, 819, 1006
BmsI GCATC 2 cut(s) 283, 597
BmuI ACTGGG 3 cut(s) 434, 819, 1006
BpiI GAAGAC 1 cut(s) 1038
BpuEI CTTGAG 3 cut(s) 774, 895, 1094
BsaAI YACGTR 3 cut(s) 166, 427, 556
BsaJI CCNNGG 4 cut(s) 177, 530, 615, 624
BsaWI WCCGGW 1 cut(s) 585
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 4 cut(s) 244, 440, 814, 1001
Bse3DI GCAATG 1 cut(s) 939
BseBI CCWGG 2 cut(s) 338, 625
BseDI CCNNGG 4 cut(s) 177, 530, 615, 624
BseGI GGATG 4 cut(s) 265, 421, 863, 1007
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 1 cut(s) 1177
BseNI ACTGG 4 cut(s) 244, 440, 814, 1001
BseRI GAGGAG 3 cut(s) 230, 736, 898
BseSI GKGCMC 2 cut(s) 327, 738
BseXI GCAGC 8 cut(s) 127, 482, 487, 488, 491, 494, 517, 681
BseYI CCCAGC 1 cut(s) 364
BsgI GTGCAG 2 cut(s) 688, 909
Bsh1236I CGCG 2 cut(s) 572, 954
BshFI GGCC 3 cut(s) 325, 1171, 1208
BshNI GGYRCC 2 cut(s) 526, 549
BsiHKAI GWGCWC 3 cut(s) 761, 850, 939
BsiSI CCGG 1 cut(s) 586
BslFI GGGAC 4 cut(s) 459, 654, 1013, 1133
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 4 cut(s) 459, 654, 1013, 1133
BsnI GGCC 3 cut(s) 325, 1171, 1208
Bsp120I GGGCCC 1 cut(s) 323
Bsp1286I GDGCHC 6 cut(s) 327, 738, 761, 850, 939, 1080
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 8 cut(s) 310, 340, 388, 766, 901, 1045, 1159, 1228
BspANI GGCC 3 cut(s) 325, 1171, 1208
BspCNI CTCAG 1 cut(s) 1176
BspFNI CGCG 2 cut(s) 572, 954
BspLI GGNNCC 7 cut(s) 325, 326, 342, 528, 551, 677, 1127
BspMI ACCTGC 1 cut(s) 663
BspPI GGATC 4 cut(s) 335, 348, 396, 761
BspQI GCTCTTC 2 cut(s) 235, 790
BspT107I GGYRCC 2 cut(s) 526, 549
BsrBI CCGCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 939
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 4 cut(s) 244, 440, 814, 1001
BssECI CCNNGG 4 cut(s) 177, 530, 615, 624
BssMI GATC 8 cut(s) 310, 340, 388, 766, 901, 1045, 1159, 1228
BssT1I CCWWGG 1 cut(s) 615
Bst2UI CCWGG 2 cut(s) 338, 625
Bst4CI ACNGT 4 cut(s) 199, 299, 534, 634
Bst6I CTCTTC 5 cut(s) 235, 260, 365, 790, 861
BstAUI TGTACA 1 cut(s) 294
BstBAI YACGTR 3 cut(s) 166, 427, 556
BstC8I GCNNGC 3 cut(s) 323, 970, 974
BstDEI CTNAG 1 cut(s) 1163
BstDSI CCRYGG 2 cut(s) 177, 530
BstEII GGTNACC 1 cut(s) 628
BstF5I GGATG 4 cut(s) 265, 421, 863, 1007
BstFNI CGCG 2 cut(s) 572, 954
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 5 cut(s) 487, 505, 562, 956, 1147
BstKTI GATC 8 cut(s) 313, 343, 391, 769, 904, 1048, 1162, 1231
BstMBI GATC 8 cut(s) 310, 340, 388, 766, 901, 1045, 1159, 1228
BstMWI GCNNNNNNNGC 9 cut(s) 188, 462, 476, 479, 482, 742, 965, 1084, 1153
BstNI CCWGG 2 cut(s) 338, 625
BstNSI RCATGY 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 628
BstSCI CCNGG 2 cut(s) 336, 623
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 2 cut(s) 327, 738
BstUI CGCG 2 cut(s) 572, 954
BstV1I GCAGC 8 cut(s) 127, 482, 487, 488, 491, 494, 517, 681
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 3 cut(s) 325, 1171, 1208
BtgI CCRYGG 2 cut(s) 177, 530
BtgZI GCGATG 1 cut(s) 620
BtrI CACGTC 1 cut(s) 845
BtsCI GGATG 4 cut(s) 265, 421, 863, 1007
BtsI GCAGTG 2 cut(s) 671, 921
BtsIMutI CAGTG 5 cut(s) 195, 237, 447, 671, 921
BveI ACCTGC 1 cut(s) 663
Cac8I GCNNGC 3 cut(s) 323, 970, 974
CaiI CAGNNNCTG 1 cut(s) 996
CfoI GCGC 5 cut(s) 487, 505, 562, 956, 1147
Cfr13I GGNCC 4 cut(s) 323, 324, 915, 1206
Csp6I GTAC 3 cut(s) 172, 295, 580
CviQI GTAC 3 cut(s) 172, 295, 580
DdeI CTNAG 1 cut(s) 1163
DpnI GATC 8 cut(s) 312, 342, 390, 768, 903, 1047, 1161, 1230
DpnII GATC 8 cut(s) 310, 340, 388, 766, 901, 1045, 1159, 1228
DraIII CACNNNGTG 2 cut(s) 598, 932
Eam1104I CTCTTC 5 cut(s) 235, 260, 365, 790, 861
EarI CTCTTC 5 cut(s) 235, 260, 365, 790, 861
EciI GGCGGA 1 cut(s) 396
Ecl136II GAGCTC 2 cut(s) 759, 937
Eco130I CCWWGG 1 cut(s) 615
Eco24I GRGCYC 4 cut(s) 327, 761, 939, 1080
Eco47I GGWCC 1 cut(s) 915
Eco53kI GAGCTC 2 cut(s) 759, 937
Eco57I CTGAAG 1 cut(s) 1242
Eco72I CACGTG 1 cut(s) 556
Eco91I GGTNACC 1 cut(s) 628
EcoICRI GAGCTC 2 cut(s) 759, 937
EcoO109I RGGNCCY 1 cut(s) 324
EcoO65I GGTNACC 1 cut(s) 628
EcoRII CCWGG 2 cut(s) 336, 623
EcoT14I CCWWGG 1 cut(s) 615
EcoT38I GRGCYC 4 cut(s) 327, 761, 939, 1080
ErhI CCWWGG 1 cut(s) 615
FaqI GGGAC 4 cut(s) 459, 654, 1013, 1133
FauI CCCGC 2 cut(s) 314, 424
FbaI TGATCA 1 cut(s) 1045
FokI GGATG 4 cut(s) 252, 428, 850, 994
FriOI GRGCYC 4 cut(s) 327, 761, 939, 1080
FspBI CTAG 3 cut(s) 126, 225, 1266
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 5 cut(s) 486, 504, 561, 955, 1146
GsaI CCCAGC 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 3 cut(s) 325, 1171, 1208
HapII CCGG 1 cut(s) 586
HhaI GCGC 5 cut(s) 487, 505, 562, 956, 1147
Hin6I GCGC 5 cut(s) 485, 503, 560, 954, 1145
HinP1I GCGC 5 cut(s) 485, 503, 560, 954, 1145
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 5 cut(s) 435, 701, 881, 1001, 1177
HpaI GTTAAC 1 cut(s) 43
HpaII CCGG 1 cut(s) 586
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 5 cut(s) 691, 901, 988, 1176, 1201
Hpy188III TCNNGA 5 cut(s) 413, 791, 932, 1100, 1232
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 988
HpyAV CCTTC 2 cut(s) 514, 568
HpyCH4III ACNGT 4 cut(s) 199, 299, 534, 634
HpyCH4IV ACGT 4 cut(s) 165, 426, 555, 844
HpyCH4V TGCA 7 cut(s) 274, 610, 669, 717, 926, 944, 1025
HpyF10VI GCNNNNNNNGC 9 cut(s) 188, 462, 476, 479, 482, 742, 965, 1084, 1153
HpyF3I CTNAG 1 cut(s) 1163
HpySE526I ACGT 4 cut(s) 165, 426, 555, 844
HspAI GCGC 5 cut(s) 485, 503, 560, 954, 1145
Ksp22I TGATCA 1 cut(s) 1045
KspAI GTTAAC 1 cut(s) 43
Kzo9I GATC 8 cut(s) 310, 340, 388, 766, 901, 1045, 1159, 1228
LguI GCTCTTC 2 cut(s) 235, 790
LmnI GCTCC 2 cut(s) 148, 409
Lsp1109I GCAGC 8 cut(s) 127, 482, 487, 488, 491, 494, 517, 681
LweI GCATC 2 cut(s) 283, 597
MaeI CTAG 3 cut(s) 126, 225, 1266
MaeII ACGT 4 cut(s) 165, 426, 555, 844
MaeIII GTNAC 4 cut(s) 193, 245, 628, 1238
MalI GATC 8 cut(s) 312, 342, 390, 768, 903, 1047, 1161, 1230
MbiI CCGCTC 1 cut(s) 421
MboI GATC 8 cut(s) 310, 340, 388, 766, 901, 1045, 1159, 1228
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 6 cut(s) 327, 738, 761, 850, 939, 1080
MlyI GAGTC 4 cut(s) 710, 875, 995, 1186
MmeI TCCRAC 1 cut(s) 966
MroXI GAANNNNTTC 1 cut(s) 784
MseI TTAA 3 cut(s) 29, 42, 1151
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 1 cut(s) 586
MspR9I CCNGG 2 cut(s) 338, 625
MvaI CCWGG 2 cut(s) 338, 625
MvnI CGCG 2 cut(s) 572, 954
MwoI GCNNNNNNNGC 9 cut(s) 188, 462, 476, 479, 482, 742, 965, 1084, 1153
NdeII GATC 8 cut(s) 310, 340, 388, 766, 901, 1045, 1159, 1228
NlaIV GGNNCC 7 cut(s) 325, 326, 342, 528, 551, 677, 1127
NmuCI GTSAC 4 cut(s) 193, 245, 628, 1238
NsbI TGCGCA 1 cut(s) 504
NspI RCATGY 1 cut(s) 28
PciI ACATGT 1 cut(s) 24
PciSI GCTCTTC 2 cut(s) 235, 790
PdmI GAANNNNTTC 1 cut(s) 784
PfeI GAWTC 1 cut(s) 435
PleI GAGTC 4 cut(s) 709, 875, 995, 1185
PmaCI CACGTG 1 cut(s) 556
PmlI CACGTG 1 cut(s) 556
PpsI GAGTC 4 cut(s) 709, 875, 995, 1185
Ppu21I YACGTR 3 cut(s) 166, 427, 556
PscI ACATGT 1 cut(s) 24
Psp124BI GAGCTC 2 cut(s) 761, 939
Psp6I CCWGG 2 cut(s) 336, 623
PspCI CACGTG 1 cut(s) 556
PspEI GGTNACC 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 2 cut(s) 336, 623
PspN4I GGNNCC 7 cut(s) 325, 326, 342, 528, 551, 677, 1127
PspOMI GGGCCC 1 cut(s) 323
PspPI GGNCC 4 cut(s) 323, 324, 915, 1206
PstNI CAGNNNCTG 1 cut(s) 996
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 3 cut(s) 173, 296, 581
RsaNI GTAC 3 cut(s) 172, 295, 580
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 2 cut(s) 761, 939
SapI GCTCTTC 2 cut(s) 235, 790
SaqAI TTAA 3 cut(s) 29, 42, 1151
Sau3AI GATC 8 cut(s) 310, 340, 388, 766, 901, 1045, 1159, 1228
Sau96I GGNCC 4 cut(s) 323, 324, 915, 1206
SchI GAGTC 4 cut(s) 710, 875, 995, 1186
ScrFI CCNGG 2 cut(s) 338, 625
SduI GDGCHC 6 cut(s) 327, 738, 761, 850, 939, 1080
SfaNI GCATC 2 cut(s) 283, 597
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 915
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 3 cut(s) 789, 910, 1073
SmoI CTYRAG 3 cut(s) 789, 910, 1073
SpeI ACTAGT 2 cut(s) 125, 1265
SspMI CTAG 3 cut(s) 126, 225, 1266
SstI GAGCTC 2 cut(s) 761, 939
StyD4I CCNGG 2 cut(s) 336, 623
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 4 cut(s) 199, 299, 534, 634
TaiI ACGT 4 cut(s) 168, 429, 558, 847
TaqI TCGA 2 cut(s) 704, 1158
TatI WGTACW 2 cut(s) 171, 294
TauI GCSGC 6 cut(s) 185, 206, 424, 476, 959, 1171
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 3 cut(s) 29, 42, 1151
Tru9I TTAA 3 cut(s) 29, 42, 1151
TscAI CASTG 5 cut(s) 202, 244, 447, 671, 928
TseFI GTSAC 4 cut(s) 193, 245, 628, 1238
TseI GCWGC 8 cut(s) 140, 470, 476, 479, 482, 500, 505, 669
Tsp45I GTSAC 4 cut(s) 193, 245, 628, 1238
TspDTI ATGAA 1 cut(s) 1146
TspGWI ACGGA 1 cut(s) 1203
TspRI CASTG 5 cut(s) 202, 244, 447, 671, 928
VpaK11BI GGWCC 1 cut(s) 915
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 1136
XmnI GAANNNNTTC 1 cut(s) 784
XspI CTAG 3 cut(s) 126, 225, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.