Rh1CG197800

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015686
Physical Location & Seq
Reverse (-)
43205194 .. 43207036
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG197800.1

Sequence Viewer

Length: 543 bp
ATGATGGCTGCAGCAGGGAGGTTTCCATACCTATCGTCATCCCCGACAGGATGTAGTGCTCTCTCTCTTCTGTCATCTTCCAAAAGTAGTAGTGATTCTTGGGTACTATCTCCATCTGATCTCTCCTCAAGATCCCGCGCTGCACTTCGTGAACTCATTGCAGAAAACCGTGCAGGCATCTTGGCTCGCCAGCTCATATCTTCTTCGGACCGATCAAACTCAAACTGGGAGGACTCATCACATTATAATAACCATTCGACCCAAGACTTCGGTGATTATCTTAGCCAATCATGGCCGTCTAGTTCTGTCGAATCCCATCACCATCATCATCATCAGCAGCAGCAGCAGCAAATGTTTTCTGCCAATCAGCACAGTTGGGACAGGTTTCATGAAAGTGGTGCACATTTGACACTTGATCTAATGCAGCAGCCTCCGAGCCCGGCATATGAGACTTTCTTGCCTGCAAGGGACAGTAGTACTAAGGCTGAAGACGAGTGTGACCTGTGGAAATGGAACTCCTTCCAAGGAGCCAGTGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

180

Amino Acids

20.1

Weight (kDa)

5.81

Isoelectric Point (pI)

72.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10680
malus_domestica MD07G1111600.v1.1
prunus_persica Prupe.2G135000_v2.0.a1
pyrus_communis pycom07g09650
rosa_chinensis RchiOBHm_Chr1g0348611
rosa_laevigata RLG00000028636
rosa_multiflora Rmu_sc0008668.1_g000011 Rmu_sc0008668.1_g000012
rosa_roxburghii Rroxscaffold_4G00306890
rosa_rugosa Rorug01G0195700
rosa_samantha Rh1AG213500 Rh1BG179900 Rh1CG197800 Rh1CG197900 Rh1DG209900
rosa_wichuraiana Rw1G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 507
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 2 cut(s) 105, 478
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw21I GWGCWC 2 cut(s) 61, 403
Alw26I GTCTC 1 cut(s) 443
Alw44I GTGCAC 1 cut(s) 399
AlwI GGATC 1 cut(s) 126
AoxI GGCC 1 cut(s) 293
ApaLI GTGCAC 1 cut(s) 399
ApeKI GCWGC 9 cut(s) 8, 11, 140, 337, 340, 343, 346, 424, 427
Asp700I GAANNNNTTC 1 cut(s) 518
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 2 cut(s) 284, 311
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 2 cut(s) 61, 403
BbvI GCAGC 8 cut(s) 23, 127, 349, 352, 355, 358, 436, 439
BccI CCATC 3 cut(s) 121, 324, 330
BceAI ACGGC 1 cut(s) 280
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 9 cut(s) 9, 12, 141, 338, 341, 344, 347, 425, 428
BlsI GCNGC 9 cut(s) 10, 13, 142, 339, 342, 345, 348, 426, 429
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 1 cut(s) 440
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 523
BsaXI ACNNNNNCTCC 1 cut(s) 519
Bse1I ACTGG 2 cut(s) 230, 531
Bse3DI GCAATG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 2 cut(s) 38, 56
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 230, 531
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 8 cut(s) 23, 127, 349, 352, 355, 358, 436, 439
BsgI GTGCAG 2 cut(s) 126, 192
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 61, 403
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 2 cut(s) 392, 482
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 2 cut(s) 392, 482
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 3 cut(s) 61, 403, 440
Bsp143I GATC 4 cut(s) 118, 131, 212, 415
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 295
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 529
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 2 cut(s) 230, 531
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 4 cut(s) 118, 131, 212, 415
BssT1I CCWWGG 1 cut(s) 523
Bst4CI ACNGT 3 cut(s) 170, 374, 473
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 4 cut(s) 175, 187, 191, 462
BstDEI CTNAG 2 cut(s) 281, 480
BstF5I GGATG 2 cut(s) 38, 56
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 4 cut(s) 121, 134, 215, 418
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 4 cut(s) 118, 131, 212, 415
BstMWI GCNNNNNNNGC 2 cut(s) 343, 346
BstSCI CCNGG 1 cut(s) 438
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 403
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 8 cut(s) 23, 127, 349, 352, 355, 358, 436, 439
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 2 cut(s) 38, 56
BtsIMutI CAGTG 1 cut(s) 538
Cac8I GCNNGC 4 cut(s) 175, 187, 191, 462
CciI TCATGA 1 cut(s) 388
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 208
CpoI CGGWCCG 1 cut(s) 208
Csp6I GTAC 2 cut(s) 104, 477
CspI CGGWCCG 1 cut(s) 208
CviAII CATG 2 cut(s) 291, 389
CviJI RGCY 9 cut(s) 8, 185, 193, 285, 295, 430, 438, 485, 530
CviKI_1 RGCY 9 cut(s) 8, 185, 193, 285, 295, 430, 438, 485, 530
CviQI GTAC 2 cut(s) 104, 477
DdeI CTNAG 2 cut(s) 281, 480
DpnI GATC 4 cut(s) 120, 133, 214, 417
DpnII GATC 4 cut(s) 118, 131, 212, 415
DraIII CACNNNGTG 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 2 cut(s) 294, 392
FaiI YATR 7 cut(s) 28, 197, 246, 292, 390, 445, 447
FaqI GGGAC 2 cut(s) 392, 482
FatI CATG 2 cut(s) 290, 388
FauI CCCGC 1 cut(s) 143
FauNDI CATATG 1 cut(s) 445
Fnu4HI GCNGC 9 cut(s) 9, 12, 141, 338, 341, 344, 347, 425, 428
FokI GGATG 2 cut(s) 25, 63
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 9 cut(s) 9, 12, 141, 338, 341, 344, 347, 425, 428
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 139
GluI GCNGC 9 cut(s) 9, 12, 141, 338, 341, 344, 347, 425, 428
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 440
HhaI GCGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 294, 392
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 3 cut(s) 95, 233, 311
HpaII CCGG 1 cut(s) 440
HphI GGTGA 2 cut(s) 284, 311
Hpy166II GTNNAC 2 cut(s) 152, 401
Hpy188I TCNGA 3 cut(s) 118, 208, 435
Hpy188III TCNNGA 3 cut(s) 129, 149, 389
Hpy8I GTNNAC 2 cut(s) 152, 401
HpyAV CCTTC 1 cut(s) 529
HpyCH4III ACNGT 3 cut(s) 170, 374, 473
HpyCH4V TGCA 7 cut(s) 11, 143, 161, 173, 401, 424, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 343, 346
HpyF3I CTNAG 2 cut(s) 281, 480
Hsp92II CATG 2 cut(s) 294, 392
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 4 cut(s) 118, 131, 212, 415
LmnI GCTCC 1 cut(s) 527
LpnPI CCDG 8 cut(s) 33, 159, 203, 211, 367, 453, 474, 515
Lsp1109I GCAGC 8 cut(s) 23, 127, 349, 352, 355, 358, 436, 439
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 497
MalI GATC 4 cut(s) 120, 133, 214, 417
MboI GATC 4 cut(s) 118, 131, 212, 415
MboII GAAGA 5 cut(s) 59, 69, 192, 195, 500
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 3 cut(s) 61, 403, 440
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 4 cut(s) 12, 136, 223, 441
MroXI GAANNNNTTC 1 cut(s) 518
MseI TTAA 1 cut(s) 541
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 440
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 343, 346
NciI CCSGG 1 cut(s) 440
NdeI CATATG 1 cut(s) 445
NdeII GATC 4 cut(s) 118, 131, 212, 415
NlaIII CATG 2 cut(s) 294, 392
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 497
PagI TCATGA 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 95, 311
PkrI GCNGC 9 cut(s) 10, 13, 142, 339, 342, 345, 348, 426, 429
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 529
PspPI GGNCC 1 cut(s) 208
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 2 cut(s) 105, 478
RsaNI GTAC 2 cut(s) 104, 477
RseI CAYNNNNRTG 1 cut(s) 393
Rsr2I CGGWCCG 1 cut(s) 208
RsrII CGGWCCG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 541
SatI GCNGC 9 cut(s) 9, 12, 141, 338, 341, 344, 347, 425, 428
Sau3AI GATC 4 cut(s) 118, 131, 212, 415
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 3 cut(s) 61, 403, 440
SetI ASST 5 cut(s) 23, 33, 195, 386, 504
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 3 cut(s) 170, 374, 473
TaqI TCGA 2 cut(s) 257, 309
TaqII GACCGA 1 cut(s) 225
TatI WGTACW 1 cut(s) 476
TfiI GAWTC 2 cut(s) 95, 311
Tru1I TTAA 1 cut(s) 541
Tru9I TTAA 1 cut(s) 541
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 9 cut(s) 8, 11, 140, 337, 340, 343, 346, 424, 427
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 2 cut(s) 377, 405
TspRI CASTG 1 cut(s) 538
VneI GTGCAC 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 518
XspI CTAG 1 cut(s) 300
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.