Rroxscaffold_4G00306890

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015686
Physical Location & Seq
Forward (+)
27868381 .. 27873185
4805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306890.1

Sequence Viewer

Length: 1512 bp
ATGGAAATGTTTGGGCACAACATTGGCGGCAGATCAGGGCAGAATGGTAATAGCGCAAATCTTGCTTCGGATATATGGGAGATGAATAATAGTAATAATAATGGCAACAACGATATATTGTACATGACGGCTGCAACAGCGGCCGTCACCATAGCGGAGCCGCCTTCCGGCTCCAGGGCGAGCTCCGAAGCGAGTTTGGGTCACCCGCTGGTGCACAACAACAACGGTGTTCAAGCAGTGCAGCAGCACTTCCAGAATTTGTACGGTGGCGATCATCATCATCATCAGCAGCAGAGTCGTCTTCGTGGGTCCCAATACCTTCCGGATCCCCACCTTATGTGCTTGAAGCTGGGGAAGAGGCACTACTTTGAGGACGCTCCTCTGCCTCTGCTTGATCATCGAGACGTGGCGGGATTTCCTTTGGCCGTAGGGGGCTTGAAGAGAGGCAAGAACATGTATGGCGCTGGCAGCGGCGGAGGTGGGGCTTCTACGCAGTCGTTGAAGGTGCCGCGGTGTCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAGCGCGAAGGAGTACCACCGGCGGCACAAAGTGTGTGAGATGCACTCCAAGGCTTCCAAGGTGGTGGTCTTAGGGTTGGAGCAGCGCTTCTGTCAGCAATGCAGCAGGTTTCACGTGGTGTCGGAGTTTGACGAGTCTAAGAGGAGTTGTAGGAGGAGATTAGCTGGGCATAATGAGCGAAGAAGAAAATGCGCTCATGATTCTCTACCCAGAAGCTCTTCTCAAGGGTTGTATCTTTACACTAGAGTTCGGCTGCTACCCATGGTAGCCCGCATGTATGGGCGAATTTGGTGGTTGGAGGTTGGGCTTGTTTGGCTCACTGAGGTCGGTCTTGTTGGCAGATCCGCCACTATGGTTCTAGTTTGGAAGGGGTGTTGTGGTTTGATACCACATATGGTTACTCCTGAGAAGAAATTGATGATGGCTGCAGCAGGGAGGTTTCCTTACCTATCGTCATCCCCGACAGGATGTAGTGCTCTCTCTCTTCTGTCATCTTCCAAAAGTAGTAGTGATTCTTGGGTACTATCTCCATCTGATCTCTCCTCAAGATCCCGCGCTGCACTTCGTGAACTCATTGCAGAAAACCGTGCAGGCATCTTGGCTCGCCAGCTCATATTATCTTCGGACCGATCAAACTCAAACTGGGAGGACTCATCACATTACAATAACCATTCGACCCAAGACTTTGGTGATTATCTTAGCCAATCATGGCCGTCTAGTTCTGTCGAATCCCATCACCACCACCATCATCAGCAGCAGCAGCAGCAGCAAATGTTTTCTGCTAATCAGCACAGTTGGGACAGGTTTCATGAAAGTGGTGCACATTTGACACTTGATCTAATGCAGCAGCCTCCGAGGCCGGCATATGAGACTTTCTTGCCTGCAAGGGACAGTAGTACTAAGGCTGAAGATGACGAGTGTGACCTGTGGAAATGGAACTCCTTCCAAGGAGCCAGTGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

503

Amino Acids

56.04

Weight (kDa)

8.86

Isoelectric Point (pI)

60.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 172 - 245 5.1e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10680
malus_domestica MD07G1111600.v1.1
prunus_persica Prupe.2G135000_v2.0.a1
pyrus_communis pycom07g09650
rosa_chinensis RchiOBHm_Chr1g0348611
rosa_laevigata RLG00000028636
rosa_multiflora Rmu_sc0008668.1_g000011 Rmu_sc0008668.1_g000012
rosa_roxburghii Rroxscaffold_4G00306890
rosa_rugosa Rorug01G0195700
rosa_samantha Rh1AG213500 Rh1BG179900 Rh1CG197800 Rh1CG197900 Rh1DG209900
rosa_wichuraiana Rw1G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 642
AccB1I GGYRCC 2 cut(s) 505, 528
AccII CGCG 3 cut(s) 511, 551, 1101
AccIII TCCGGA 1 cut(s) 322
AclWI GGATC 4 cut(s) 320, 333, 882, 1089
AcoI YGGCCR 3 cut(s) 141, 423, 1256
AcsI RAATTY 2 cut(s) 256, 831
AcuI CTGAAG 1 cut(s) 1473
AcvI CACGTG 2 cut(s) 535, 661
AdeI CACNNNGTG 3 cut(s) 577, 664, 1112
AfaI GTAC 5 cut(s) 122, 263, 560, 1068, 1444
AfeI AGCGCT 1 cut(s) 632
AfiI CCNNNNNNNGG 2 cut(s) 167, 174
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 4 cut(s) 233, 346, 439, 502
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 5 cut(s) 183, 349, 710, 762, 1156
AluI AGCT 5 cut(s) 183, 349, 710, 762, 1156
Alw21I GWGCWC 4 cut(s) 185, 216, 1024, 1369
Alw26I GTCTC 2 cut(s) 396, 1409
Alw44I GTGCAC 2 cut(s) 212, 1365
AlwI GGATC 4 cut(s) 320, 333, 882, 1089
Aor13HI TCCGGA 1 cut(s) 322
Aor51HI AGCGCT 1 cut(s) 632
AoxI GGCC 4 cut(s) 141, 423, 1256, 1403
ApaLI GTGCAC 2 cut(s) 212, 1365
ApoI RAATTY 2 cut(s) 256, 831
Asp700I GAANNNNTTC 2 cut(s) 763, 1487
AspLEI GCGC 7 cut(s) 56, 464, 541, 551, 633, 740, 1103
AspS9I GGNCC 2 cut(s) 309, 1171
AsuHPI GGTGA 5 cut(s) 139, 194, 556, 1247, 1274
AvaII GGWCC 2 cut(s) 309, 1171
BaeGI GKGCMC 3 cut(s) 18, 216, 1369
BamHI GGATCC 1 cut(s) 325
BanI GGYRCC 2 cut(s) 505, 528
BanII GRGCYC 1 cut(s) 185
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbrPI CACGTG 2 cut(s) 535, 661
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 4 cut(s) 185, 216, 1024, 1369
BccI CCATC 4 cut(s) 961, 1084, 1287, 1299
BceAI ACGGC 4 cut(s) 128, 144, 410, 1243
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 175
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 396, 1409
BfaI CTAG 3 cut(s) 789, 905, 1263
BfmI CTRYAG 1 cut(s) 972
BfoI RGCGCY 3 cut(s) 465, 542, 634
BfuAI ACCTGC 1 cut(s) 642
BglI GCCNNNNNGGC 1 cut(s) 1402
BmcAI AGTACT 1 cut(s) 1444
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 2 cut(s) 309, 1171
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 309, 1171
BmiI GGNNCC 8 cut(s) 159, 172, 310, 311, 327, 507, 530, 1498
BmrFI CCNGG 1 cut(s) 175
BmrI ACTGGG 1 cut(s) 1198
BmsI GCATC 2 cut(s) 576, 1149
BmuI ACTGGG 1 cut(s) 1198
BpiI GAAGAC 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BpmI CTGGAG 1 cut(s) 157
BpuEI CTTGAG 2 cut(s) 753, 1075
BsaAI YACGTR 2 cut(s) 535, 661
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 7 cut(s) 174, 509, 594, 603, 807, 1400, 1492
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 1 cut(s) 1488
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 174
Bse118I RCCGGY 2 cut(s) 564, 1405
Bse1I ACTGG 2 cut(s) 1193, 1500
Bse3DI GCAATG 2 cut(s) 650, 1119
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 7 cut(s) 174, 509, 594, 603, 807, 1400, 1492
BseGI GGATG 2 cut(s) 1001, 1019
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 167, 174
BseMI GCAATG 2 cut(s) 650, 1119
BseMII CTCAG 2 cut(s) 858, 942
BseNI ACTGG 2 cut(s) 1193, 1500
BseRI GAGGAG 4 cut(s) 369, 703, 715, 1078
BseSI GKGCMC 3 cut(s) 18, 216, 1369
BseX3I CGGCCG 1 cut(s) 141
BseYI CCCAGC 2 cut(s) 349, 710
BsgI GTGCAG 3 cut(s) 260, 1089, 1155
Bsh1236I CGCG 3 cut(s) 511, 551, 1101
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 143, 425, 1258, 1405
BshNI GGYRCC 2 cut(s) 505, 528
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 4 cut(s) 185, 216, 1024, 1369
BsiSI CCGG 4 cut(s) 168, 323, 565, 1406
BslFI GGGAC 3 cut(s) 295, 1358, 1448
BslI CCNNNNNNNGG 2 cut(s) 167, 174
BsmAI GTCTC 2 cut(s) 396, 1409
BsmBI CGTCTC 1 cut(s) 396
BsmFI GGGAC 3 cut(s) 295, 1358, 1448
BsnI GGCC 4 cut(s) 143, 425, 1258, 1405
Bsp1286I GDGCHC 5 cut(s) 18, 185, 216, 1024, 1369
Bsp13I TCCGGA 1 cut(s) 322
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 9 cut(s) 32, 271, 325, 394, 887, 1081, 1094, 1175, 1381
Bsp19I CCATGG 1 cut(s) 807
BspANI GGCC 4 cut(s) 143, 425, 1258, 1405
BspCNI CTCAG 2 cut(s) 859, 943
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 3 cut(s) 511, 551, 1101
BspHI TCATGA 2 cut(s) 742, 1354
BspLI GGNNCC 8 cut(s) 159, 172, 310, 311, 327, 507, 530, 1498
BspMAI CTGCAG 1 cut(s) 976
BspMI ACCTGC 1 cut(s) 642
BspPI GGATC 4 cut(s) 320, 333, 882, 1089
BspQI GCTCTTC 1 cut(s) 769
BspT107I GGYRCC 2 cut(s) 505, 528
BsrDI GCAATG 2 cut(s) 650, 1119
BsrFI RCCGGY 2 cut(s) 564, 1405
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 2 cut(s) 1193, 1500
BssAI RCCGGY 2 cut(s) 564, 1405
BssECI CCNNGG 7 cut(s) 174, 509, 594, 603, 807, 1400, 1492
BssMI GATC 9 cut(s) 32, 271, 325, 394, 887, 1081, 1094, 1175, 1381
BssT1I CCWWGG 4 cut(s) 594, 603, 807, 1492
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 5 cut(s) 227, 266, 1133, 1340, 1439
Bst6I CTCTTC 4 cut(s) 350, 434, 769, 1035
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 120
BstBAI YACGTR 2 cut(s) 535, 661
BstC8I GCNNGC 8 cut(s) 181, 466, 817, 1138, 1150, 1154, 1407, 1428
BstDEI CTNAG 6 cut(s) 616, 684, 867, 951, 1244, 1446
BstDSI CCRYGG 2 cut(s) 509, 807
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 2 cut(s) 1001, 1019
BstFNI CGCG 3 cut(s) 511, 551, 1101
BstH2I RGCGCY 3 cut(s) 465, 542, 634
BstHHI GCGC 7 cut(s) 56, 464, 541, 551, 633, 740, 1103
BstKTI GATC 9 cut(s) 35, 274, 328, 397, 890, 1084, 1097, 1178, 1384
BstMAI GTCTC 2 cut(s) 396, 1409
BstMBI GATC 9 cut(s) 32, 271, 325, 394, 887, 1081, 1094, 1175, 1381
BstMCI CGRYCG 1 cut(s) 144
BstNI CCWGG 1 cut(s) 175
BstNSI RCATGY 2 cut(s) 457, 823
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 972
BstSLI GKGCMC 3 cut(s) 18, 216, 1369
BstUI CGCG 3 cut(s) 511, 551, 1101
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 3 cut(s) 325, 887, 1094
BstXI CCANNNNNNTGG 2 cut(s) 610, 1232
BstYI RGATCY 3 cut(s) 325, 887, 1094
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 4 cut(s) 143, 425, 1258, 1405
BtgI CCRYGG 2 cut(s) 509, 807
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 2 cut(s) 1001, 1019
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 243, 864, 1507
BveI ACCTGC 1 cut(s) 642
Cac8I GCNNGC 8 cut(s) 181, 466, 817, 1138, 1150, 1154, 1407, 1428
CciI TCATGA 2 cut(s) 742, 1354
CfoI GCGC 7 cut(s) 56, 464, 541, 551, 633, 740, 1103
Cfr10I RCCGGY 2 cut(s) 564, 1405
Cfr13I GGNCC 2 cut(s) 309, 1171
Cfr42I CCGCGG 1 cut(s) 512
CpoI CGGWCCG 1 cut(s) 1171
CseI GACGC 1 cut(s) 383
Csp6I GTAC 5 cut(s) 121, 262, 559, 1067, 1443
CspI CGGWCCG 1 cut(s) 1171
CviAII CATG 7 cut(s) 124, 454, 743, 808, 820, 1254, 1355
CviQI GTAC 5 cut(s) 121, 262, 559, 1067, 1443
DdeI CTNAG 6 cut(s) 616, 684, 867, 951, 1244, 1446
DpnI GATC 9 cut(s) 34, 273, 327, 396, 889, 1083, 1096, 1177, 1383
DpnII GATC 9 cut(s) 32, 271, 325, 394, 887, 1081, 1094, 1175, 1381
DraIII CACNNNGTG 3 cut(s) 577, 664, 1112
EaeI YGGCCR 3 cut(s) 141, 423, 1256
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 4 cut(s) 350, 434, 769, 1035
EarI CTCTTC 4 cut(s) 350, 434, 769, 1035
EciI GGCGGA 2 cut(s) 489, 880
Ecl136II GAGCTC 1 cut(s) 183
EclXI CGGCCG 1 cut(s) 141
Eco130I CCWWGG 4 cut(s) 594, 603, 807, 1492
Eco24I GRGCYC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 309, 1171
Eco47III AGCGCT 1 cut(s) 632
Eco52I CGGCCG 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 1473
Eco72I CACGTG 2 cut(s) 535, 661
Eco91I GGTNACC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 309
EcoO65I GGTNACC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 173
EcoT14I CCWWGG 4 cut(s) 594, 603, 807, 1492
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 4 cut(s) 594, 603, 807, 1492
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 7 cut(s) 127, 457, 746, 811, 823, 1257, 1358
FaqI GGGAC 3 cut(s) 295, 1358, 1448
FatI CATG 7 cut(s) 123, 453, 742, 807, 819, 1253, 1354
FauI CCCGC 4 cut(s) 213, 403, 824, 1106
FauNDI CATATG 2 cut(s) 939, 1411
FbaI TGATCA 1 cut(s) 394
FokI GGATG 2 cut(s) 988, 1026
FriOI GRGCYC 1 cut(s) 185
FspBI CTAG 3 cut(s) 789, 905, 1263
GlaI GCGC 7 cut(s) 55, 463, 540, 550, 632, 739, 1102
GsaI CCCAGC 2 cut(s) 353, 714
GsuI CTGGAG 1 cut(s) 157
HaeII RGCGCY 3 cut(s) 465, 542, 634
HaeIII GGCC 4 cut(s) 143, 425, 1258, 1405
HapII CCGG 4 cut(s) 168, 323, 565, 1406
HgaI GACGC 1 cut(s) 383
HhaI GCGC 7 cut(s) 56, 464, 541, 551, 633, 740, 1103
Hin1II CATG 7 cut(s) 127, 457, 746, 811, 823, 1257, 1358
Hin6I GCGC 7 cut(s) 54, 462, 539, 549, 631, 738, 1101
HinP1I GCGC 7 cut(s) 54, 462, 539, 549, 631, 738, 1101
HinfI GANTC 6 cut(s) 295, 680, 746, 1058, 1196, 1274
HpaII CCGG 4 cut(s) 168, 323, 565, 1406
HphI GGTGA 5 cut(s) 139, 194, 556, 1247, 1274
Hpy166II GTNNAC 3 cut(s) 214, 1115, 1367
Hpy188I TCNGA 6 cut(s) 70, 187, 670, 1081, 1171, 1401
Hpy188III TCNNGA 8 cut(s) 253, 323, 401, 743, 950, 1092, 1112, 1355
Hpy8I GTNNAC 3 cut(s) 214, 1115, 1367
HpyAV CCTTC 6 cut(s) 174, 329, 496, 547, 907, 1498
HpyCH4III ACNGT 5 cut(s) 227, 266, 1133, 1340, 1439
HpyCH4IV ACGT 3 cut(s) 405, 534, 660
HpyF3I CTNAG 6 cut(s) 616, 684, 867, 951, 1244, 1446
HpySE526I ACGT 3 cut(s) 405, 534, 660
Hsp92II CATG 7 cut(s) 127, 457, 746, 811, 823, 1257, 1358
HspAI GCGC 7 cut(s) 54, 462, 539, 549, 631, 738, 1101
KflI GGGWCCC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 322
KroI GCCGGC 1 cut(s) 1405
KroNI GCCGGC 1 cut(s) 1407
Ksp22I TGATCA 1 cut(s) 394
KspI CCGCGG 1 cut(s) 512
Kzo9I GATC 9 cut(s) 32, 271, 325, 394, 887, 1081, 1094, 1175, 1381
LguI GCTCTTC 1 cut(s) 769
LmnI GCTCC 6 cut(s) 157, 176, 188, 382, 625, 1496
LweI GCATC 2 cut(s) 576, 1149
MaeI CTAG 3 cut(s) 789, 905, 1263
MaeII ACGT 3 cut(s) 405, 534, 660
MaeIII GTNAC 4 cut(s) 145, 200, 943, 1466
MalI GATC 9 cut(s) 34, 273, 327, 396, 889, 1083, 1096, 1177, 1383
MboI GATC 9 cut(s) 32, 271, 325, 394, 887, 1081, 1094, 1175, 1381
MflI RGATCY 3 cut(s) 325, 887, 1094
MhlI GDGCHC 5 cut(s) 18, 185, 216, 1024, 1369
MluCI AATT 3 cut(s) 256, 831, 959
MlyI GAGTC 3 cut(s) 304, 689, 1190
MmeI TCCRAC 3 cut(s) 603, 648, 822
MroI TCCGGA 1 cut(s) 322
MroNI GCCGGC 1 cut(s) 1405
MroXI GAANNNNTTC 2 cut(s) 763, 1487
MseI TTAA 1 cut(s) 1510
MslI CAYNNNNRTG 1 cut(s) 1359
MspA1I CMGCKG 4 cut(s) 140, 208, 471, 511
MspI CCGG 4 cut(s) 168, 323, 565, 1406
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 3 cut(s) 511, 551, 1101
NaeI GCCGGC 1 cut(s) 1407
NcoI CCATGG 1 cut(s) 807
NdeI CATATG 2 cut(s) 939, 1411
NdeII GATC 9 cut(s) 32, 271, 325, 394, 887, 1081, 1094, 1175, 1381
NgoMIV GCCGGC 1 cut(s) 1405
NlaIII CATG 7 cut(s) 127, 457, 746, 811, 823, 1257, 1358
NlaIV GGNNCC 8 cut(s) 159, 172, 310, 311, 327, 507, 530, 1498
NmuCI GTSAC 3 cut(s) 145, 200, 1466
NspI RCATGY 2 cut(s) 457, 823
PagI TCATGA 2 cut(s) 742, 1354
PciI ACATGT 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 769
PcsI WCGNNNNNNNCGW 1 cut(s) 1004
PdiI GCCGGC 1 cut(s) 1407
PdmI GAANNNNTTC 2 cut(s) 763, 1487
PfeI GAWTC 3 cut(s) 746, 1058, 1274
PleI GAGTC 3 cut(s) 303, 688, 1190
PmaCI CACGTG 2 cut(s) 535, 661
PmlI CACGTG 2 cut(s) 535, 661
PpsI GAGTC 3 cut(s) 303, 688, 1190
Ppu21I YACGTR 2 cut(s) 535, 661
PpuMI RGGWCCY 1 cut(s) 309
PscI ACATGT 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 173
PspCI CACGTG 2 cut(s) 535, 661
PspEI GGTNACC 1 cut(s) 200
PspFI CCCAGC 2 cut(s) 349, 710
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 8 cut(s) 159, 172, 310, 311, 327, 507, 530, 1498
PspPI GGNCC 2 cut(s) 309, 1171
PspPPI RGGWCCY 1 cut(s) 309
PstI CTGCAG 1 cut(s) 976
PsuI RGATCY 3 cut(s) 325, 887, 1094
RsaI GTAC 5 cut(s) 122, 263, 560, 1068, 1444
RsaNI GTAC 5 cut(s) 121, 262, 559, 1067, 1443
RseI CAYNNNNRTG 1 cut(s) 1359
Rsr2I CGGWCCG 1 cut(s) 1171
RsrII CGGWCCG 1 cut(s) 1171
SacI GAGCTC 1 cut(s) 185
SacII CCGCGG 1 cut(s) 512
SapI GCTCTTC 1 cut(s) 769
SaqAI TTAA 1 cut(s) 1510
Sau3AI GATC 9 cut(s) 32, 271, 325, 394, 887, 1081, 1094, 1175, 1381
Sau96I GGNCC 2 cut(s) 309, 1171
ScaI AGTACT 1 cut(s) 1444
SchI GAGTC 3 cut(s) 304, 689, 1190
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 5 cut(s) 18, 185, 216, 1024, 1369
SfaNI GCATC 2 cut(s) 576, 1149
SfcI CTRYAG 1 cut(s) 972
Sfr303I CCGCGG 1 cut(s) 512
SgrAI CRCCGGYG 1 cut(s) 564
SgrBI CCGCGG 1 cut(s) 512
SinI GGWCC 2 cut(s) 309, 1171
SmiMI CAYNNNNRTG 1 cut(s) 1359
SmlI CTYRAG 2 cut(s) 768, 1090
SmoI CTYRAG 2 cut(s) 768, 1090
Sse9I AATT 3 cut(s) 256, 831, 959
SspMI CTAG 3 cut(s) 789, 905, 1263
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 4 cut(s) 594, 603, 807, 1492
TaaI ACNGT 5 cut(s) 227, 266, 1133, 1340, 1439
TaiI ACGT 3 cut(s) 408, 537, 663
TaqI TCGA 3 cut(s) 400, 1220, 1272
TaqII GACCGA 2 cut(s) 863, 1188
TasI AATT 3 cut(s) 256, 831, 959
TatI WGTACW 2 cut(s) 120, 1442
TauI GCSGC 6 cut(s) 30, 143, 163, 474, 511, 571
TfiI GAWTC 3 cut(s) 746, 1058, 1274
Tru1I TTAA 1 cut(s) 1510
Tru9I TTAA 1 cut(s) 1510
TscAI CASTG 3 cut(s) 243, 871, 1507
TseFI GTSAC 3 cut(s) 145, 200, 1466
Tsp45I GTSAC 3 cut(s) 145, 200, 1466
TspDTI ATGAA 3 cut(s) 98, 1343, 1371
TspRI CASTG 3 cut(s) 243, 871, 1507
VneI GTGCAC 2 cut(s) 212, 1365
VpaK11BI GGWCC 2 cut(s) 309, 1171
XapI RAATTY 2 cut(s) 256, 831
XceI RCATGY 2 cut(s) 457, 823
XmnI GAANNNNTTC 2 cut(s) 763, 1487
XspI CTAG 3 cut(s) 789, 905, 1263
ZrmI AGTACT 1 cut(s) 1444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.